LOC110490276 (LOC106576110)


Basic Information

Item Value
gene id LOC110490276
gene name LOC106576110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52154155 ~ 52176143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944575.1
TCTGCCCACTGTGCTTAATTTGTTCCCGTTTCAAACGTCAGGCTTTGTtccatcttgggttagttataagaATCTTTGGTATAAGCATAGGCGGACTGGATCGTACCGTTCtctcaaaaaatattttaattgCGCTTCTTTTGACGAATTTGCATTCATTTTTAATATAAAGATTTTATATGTGTAtgtgatacatgttgtgtaacaACCGCTTAATGCTCTCAAGATGATCTAGTCCTGCATTTCAAAAAGTGCGCACTCCCCCCGTTAGGTGTTTGGTTTATTCCCACAGACTGCCATGTTGGATTGAGCCACAAATCTGCTGCTGTTCGCGCTGGAGTTCCGATGAAACTTTAGTATCTACCGTCTTCAGGACGTTGCAGTAATGTTCTCATAATTTGGATTGAAGGAGGACCTTGCGTTGTGTTTGGAACCAACGGGGATGTTCGCGTACTAAAGCGGTTTCTATCGGGTTGTGGTCAGACGTGCATCGATGTGAGGGTCCGGTTGCAGGCCACGGCAGATCAATGACTATTTGTTTGAGTTTCATACATCGACGAATCGGAATCATAACACACCTTTTGGTTGATTGTCAGTAATGAGTGGCCATCTGCCGCAACGGCGGCCCGCTAACAATGGATCCATACTGCTAACCCCACAAGAGAACGACTGTCTCTTCAATTACCTCGGCAGGAAATGCACGTCGCTGTGTTCTGCAGTGGTGCAGGTATATGCAGCAGACAGGAACTCAGCTTGGACCAAGAGGTGCTGTGGTGTGGCCTGTCTGGTCAAAGACAACCCAGCACGATCCTACTTTATCAGGGTGTTTGACATCAAGGAGGGTAAAACCGTGTTTGAGCAGGAGCTCTACAACAACTTCTCAATCACCGTTTCCAAATCTTACTTCTTCACGTTCGCAGGAGATtCGTGCCAGATGGGACTGAACTTCGCAAGCGAGGAGGAGGCCAAGCATTTCCGAGTCGCCGTGGGAGACCTGCTGGGGAGACGACAGAGAAAATCTGaAAAGAGACGTGACCCTCCAGGTCAAAATGgcccgGCCCTGCCCATGGCCACGGTGGACATCAAGAACCCAGAGATCAACACTGTGTCACGGTTCCACGGACACACCTCTCAGACTAACATGGTGAGCAGCAGCTTCAATAACAACAACAGGAAGGAGAAGAAGGTGAAGGGAAAGAAGGGCAAGAAGCTGACCAAGGCAGACATCGGAACGCCCAGCAACTTCCAGCACGTTGGCCACGTCGGCTGGGACCCTAACACAGGCTTCGATctGAACAACCTAGACCCGGAGCTGAAGAACCTGTTTGACATGTGTGGCATCTCTGAGGCCCAGCTGAAGGACAAGGAGACCTCCAAGGTCATCTATGACTTCATTGAGAAGAAGGGAGGCGTGGAGGCAGTCAAGATCGAGCTCCGcagacaagcccccccaccccctccttccAGAGGTGGACCAccaccccctcccccacaccAGACTTCCGGCCCCCCGCCCCCACCCATCAGGGGAAGGGGcgcacctccacctcctcccccctccagagCGCCCACCTCagccccaccaccacctcccccctCCAGAACAGGCATGGGagctccacccccacccccaaccaGAGGccctctgccccctcctccccagCCTTCCCATGCCTCCCTGGCTCCCCATGCCCCACCTCCTCCCCCGCCTCCCTCCTCCGCCCCAGCAGGTATGGGTTCCGgagcaccccctcctcctcccccgccTCCCGGCCCTCCTCCCCCACCCATGCTGCTGGAAGCTGATGGAGGGGGTGGTGGTGCTGGTAAGCCCTCAGCCCTGTTGAGCCAGATCAGGGAGGGGGCTCCGCTGAAGAAGGTGGAGCAGAAGGAGAGGCCCGTTTCCACCAGCACCGGCCGAGACGGTCTCCTCGAACAGATACGACAGGGGAAGCAGCTAAAGGCTGTGACTGACGAACCAGTGTCAGGAGGACCCGCCAGTCCCTCAGCCGGCATCGTAGGAGCTCTGATGGAAGTGATGCAGAAGAGGAGCAAAGCCATCCACtcctcagatgatgacgacgatgatgatgaggaagaggacTTTGAGGATGATGATGAGTGGGATGACTAGTGACACCCCCCCCCCAGATGATTATGACAACACTACATTGTTCCTAAATTGTTTTTCTAAATCTTATTCAAATgataatgtaaatgttttatcGATTTGCTGTATATTTTTGTTGCCtttatgcttttttttttatttgtattctgTGCAATACCTCATTtaatctgtaaaggtttgtcatGTTCTCTTTCTGTAAAGTTGTTCTCTCCTGcattaacattttttttatgtcaAGTTTCTCTTGATCTGTAGAGTTCAGTCAGTGACTGGAGGGAGAACAAATGAACAAACTGACAGGGCCCTAAATGTTAAGAGTTGTTAAGAACGAGAACACTATTTTCATACCCTTCTCTTACTTAATTTTTACTTATTCAAAAATCCTAGTTTAGCTCTTATTTTCTTACGAAATCAGCTCTGTTGGAATATTTAGTCCCATTCGCTGTCAATGGTAAATCTACTCAGAGTTTGTATTTTTGCACGAATTGAAAGAAGCGGCTCAGTACGTGAATACGGAGCAGTATCATGGCTGTATCTGCAAAGTTATGCTTTAAAGGCTACCGATATCACTTCAATTATCCAATACTGTCAACCCGTACACTACagtagcgcacacacacacacacacacacacacacacacacacacacacacacacagctgtctgctCTGCGTTTCGGCTTGTTTCATCAGTTACAatatacagttacagtatactCTACAAACATATGTTTTACTGTAGCAATCAGCCGCCTGCAGTTCTTTGTTTGAATCAGGTCGGTGCGGATGCAACGCTTGAGGAGGAATTAGTGTTAACTTAATATGACATCTGAACTGTTTCACTAACAAAACTGTCCTTCAGGACCAGTGAACTACACTAACACTCATCTACCATTGAAACTAACCTAGTCTCTACACAGAGGGATACTGCTTTCTCATTGGGGAAGGGAACTAATGCTGTTTTTTACAGTATCGCTCTGTCTGTTTTCACGGTTAGTGAAACTGTTCAGTAACCAGGATATATGGACCTCAAACCTTCAGAAATGAGGTTGGAAGAATAATGGACTATTAAATTGTACACTCGAATAAATGTTAATATTTACA
>XM_036944576.1
GCCCACTGTGCTTAATTTGTTCCCGTTTCAAACGTCAGGCTTTGTtccatcttgggttagttataagaATCTTTGGTATAAGCATAGGCGGACTGGATCGTACCGTTCtctcaaaaaatattttaattgCGCTTCTTTTGACGAATTTGCATTCATTTTTAATATAAAGATTTTATATGTGTAtgtgatacatgttgtgtaacaACCGCTTAATGCTCTCAAGATGATCTAGTCCTGCATTTCAAAAAGTGCGCACTCCCCCCGTTAGGTGTTTGGTTTATTCCCACAGACTGCCATGTTGGATTGAGCCACAAATCTGCTGCTGTTCGCGCTGGAGTTCCGATGAAACTTTAGTATCTACCGTCTTCAGGACGTTGCAGTAATGTTCTCATAATTTGGATTGAAGGAGGACCTTGCGTTGTGTTTGGAACCAACGGGGATGTTCGCGTACTAAAGCGGTTTCTATCGGGTTGTGGTCAGACGTGCATCGATGTGAGGGTCCGGTTGCAGGCCACGGCAGATCAATGACTATTTGTTTGAGTTTCATACATCGACGAATCGGAATCATAACACACCTTTTGGTTGATTGTCAGTAATGAGTGGCCATCTGCCGCAACGGCGGCCCGCTAACAATGGATCCATACTGCTAACCCCACAAGAGAACGACTGTCTCTTCAATTACCTCGGCAGGAAATGCACGTCGCTGTGTTCTGCAGTGGTGCAGGTATATGCAGCAGACAGGAACTCAGCTTGGACCAAGAGGTGCTGTGGTGTGGCCTGTCTGGTCAAAGACAACCCAGCACGATCCTACTTTATCAGGGTGTTTGACATCAAGGAGGGTAAAACCGTGTTTGAGCAGGAGCTCTACAACAACTTCTCAATCACCGTTTCCAAATCTTACTTCTTCACGTTCGCAGGAGATtCGTGCCAGATGGGACTGAACTTCGCAAGCGAGGAGGAGGCCAAGCATTTCCGAGTCGCCGTGGGAGACCTGCTGGGGAGACGACAGAGAAAATCTGgcccgGCCCTGCCCATGGCCACGGTGGACATCAAGAACCCAGAGATCAACACTGTGTCACGGTTCCACGGACACACCTCTCAGACTAACATGGTGAGCAGCAGCTTCAATAACAACAACAGGAAGGAGAAGAAGGTGAAGGGAAAGAAGGGCAAGAAGCTGACCAAGGCAGACATCGGAACGCCCAGCAACTTCCAGCACGTTGGCCACGTCGGCTGGGACCCTAACACAGGCTTCGATctGAACAACCTAGACCCGGAGCTGAAGAACCTGTTTGACATGTGTGGCATCTCTGAGGCCCAGCTGAAGGACAAGGAGACCTCCAAGGTCATCTATGACTTCATTGAGAAGAAGGGAGGCGTGGAGGCAGTCAAGATCGAGCTCCGcagacaagcccccccaccccctccttccAGAGGTGGACCAccaccccctcccccacaccAGACTTCCGGCCCCCCGCCCCCACCCATCAGGGGAAGGGGcgcacctccacctcctcccccctccagagCGCCCACCTCagccccaccaccacctcccccctCCAGAACAGGCATGGGagctccacccccacccccaaccaGAGGccctctgccccctcctccccagCCTTCCCATGCCTCCCTGGCTCCCCATGCCCCACCTCCTCCCCCGCCTCCCTCCTCCGCCCCAGCAGGTATGGGTTCCGgagcaccccctcctcctcccccgccTCCCGGCCCTCCTCCCCCACCCATGCTGCTGGAAGCTGATGGAGGGGGTGGTGGTGCTGGTAAGCCCTCAGCCCTGTTGAGCCAGATCAGGGAGGGGGCTCCGCTGAAGAAGGTGGAGCAGAAGGAGAGGCCCGTTTCCACCAGCACCGGCCGAGACGGTCTCCTCGAACAGATACGACAGGGGAAGCAGCTAAAGGCTGTGACTGACGAACCAGTGTCAGGAGGACCCGCCAGTCCCTCAGCCGGCATCGTAGGAGCTCTGATGGAAGTGATGCAGAAGAGGAGCAAAGCCATCCACtcctcagatgatgacgacgatgatgatgaggaagaggacTTTGAGGATGATGATGAGTGGGATGACTAGTGACACCCCCCCCCCAGATGATTATGACAACACTACATTGTTCCTAAATTGTTTTTCTAAATCTTATTCAAATgataatgtaaatgttttatcGATTTGCTGTATATTTTTGTTGCCtttatgcttttttttttatttgtattctgTGCAATACCTCATTtaatctgtaaaggtttgtcatGTTCTCTTTCTGTAAAGTTGTTCTCTCCTGcattaacattttttttatgtcaAGTTTCTCTTGATCTGTAGAGTTCAGTCAGTGACTGGAGGGAGAACAAATGAACAAACTGACAGGGCCCTAAATGTTAAGAGTTGTTAAGAACGAGAACACTATTTTCATACCCTTCTCTTACTTAATTTTTACTTATTCAAAAATCCTAGTTTAGCTCTTATTTTCTTACGAAATCAGCTCTGTTGGAATATTTAGTCCCATTCGCTGTCAATGGTAAATCTACTCAGAGTTTGTATTTTTGCACGAATTGAAAGAAGCGGCTCAGTACGTGAATACGGAGCAGTATCATGGCTGTATCTGCAAAGTTATGCTTTAAAGGCTACCGATATCACTTCAATTATCCAATACTGTCAACCCGTACACTACagtagcgcacacacacacacacacacacacacacacacacacacacacacacacagctgtctgctCTGCGTTTCGGCTTGTTTCATCAGTTACAatatacagttacagtatactCTACAAACATATGTTTTACTGTAGCAATCAGCCGCCTGCAGTTCTTTGTTTGAATCAGGTCGGTGCGGATGCAACGCTTGAGGAGGAATTAGTGTTAACTTAATATGACATCTGAACTGTTTCACTAACAAAACTGTCCTTCAGGACCAGTGAACTACACTAACACTCATCTACCATTGAAACTAACCTAGTCTCTACACAGAGGGATACTGCTTTCTCATTGGGGAAGGGAACTAATGCTGTTTTTTACAGTATCGCTCTGTCTGTTTTCACGGTTAGTGAAACTGTTCAGTAACCAGGATATATGGACCTCAAACCTTCAGAAATGAGGTTGGAAGAATAATGGACTATTAAATTGTACACTCGAATAAATGTTAATATTTACA

Function

NR:

description
neural Wiskott-Aldrich syndrome protein-like, partial

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K23612 WASL; neural Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944575.1 False 3235 mRNA 0.49 11 52154155 52176143
XM_036944576.1 True 3202 mRNA 0.49 10 52154158 52176143

Neighbor

gene id symbol gene type direction distance location
LOC110490275 LOC106576109 coding upstream 27850 52122586 ~ 52126305 (+)
LOC110490274 LOC106576108 coding upstream 79611 52064879 ~ 52074544 (+)
LOC110490742 LOC106609203 coding upstream 423621 51411245 ~ 51730534 (+)
LOC110490271 LOC106576088 coding upstream 749754 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 coding upstream 771576 51351361 ~ 51382579 (+)
LOC110490280 LOC106609195 coding downstream 28682 52204825 ~ 52207709 (+)
LOC110490279 LOC106576114 coding downstream 143479 52319622 ~ 52327848 (+)
LOC110490283 dus4l coding downstream 171981 52348124 ~ 52366962 (+)
LOC110490848 LOC106609256 coding downstream 789705 52965848 ~ 52968742 (+)
LOC110490290 LOC106609170 coding downstream 799469 52975612 ~ 53008441 (+)
G1305033 NA non-coding upstream 44109 52068728 ~ 52110046 (+)
G1305026 NA non-coding upstream 111390 52042536 ~ 52042765 (+)
G1304932 NA non-coding upstream 204366 51949589 ~ 51949789 (+)
G1304931 NA non-coding upstream 205675 51948232 ~ 51948480 (+)
G1304895 LOC107662719 non-coding upstream 232168 51921348 ~ 51921987 (+)
G1305145 LOC106609192 non-coding downstream 37383 52213526 ~ 52238349 (+)
G1305176 NA non-coding downstream 125861 52302004 ~ 52302222 (+)
G1305183 NA non-coding downstream 136540 52312683 ~ 52312899 (+)
G1305175 NA non-coding downstream 152583 52328726 ~ 52329622 (+)
G1305193 NA non-coding downstream 157501 52333644 ~ 52334232 (+)
G1304886 NA other upstream 239145 51914597 ~ 51915010 (+)
G1304083 NA other upstream 501155 51584754 ~ 51653000 (+)
G1303950 LOC106576084 other upstream 854394 51299403 ~ 51299761 (+)
G1305302 NA other downstream 336486 52512629 ~ 52513050 (+)
sox5 LOC106576150 other downstream 1176474 53352462 ~ 53471763 (+)
G1306708 NA other downstream 1404398 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 1713085 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 2981863 55157706 ~ 55170847 (+)

Expression


Co-expression Network