LOC110490280 (LOC106609195)


Basic Information

Item Value
gene id LOC110490280
gene name LOC106609195
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52204825 ~ 52207709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563579.2
cttttattttgaaaaaacgAGGACGTGTTGACGTCATTTTTATTCGACAGAAGTGACCCAGAATCCGTAGCGCCCATAATCATGGCTGGCGTTCTGAAAAAGACAACAGGTTTGGTGGGACTGGCCGTGTCCCACAACCCTCATGAGCGCCTGAGGATCTTGTACAGTAAGATCCTGGCGTCTCTCCAGGTCATCCCTCAGGACGCAGCCTACAGAAAGTACACAGAACAGCTTGTCAATGACCGTTTTGACCTTATCAAAGCCGAGCCTGATGTGGAGAAACTAGAGAAGAAAATCAACTGTGGTCAGATCGAGGAGGTCATTCACCAGGCGGAGTGCGAGTTGGCTCTATCCAGGAAGATGGCAGAGTGGAAACCATGGGAACCACTGATTGAAGAGCCTCCTGTCAACCAATGGAAGTGGCCCGTTTAAAGACTACTTGctgtatttgtctgtttgtgtcaGTGTAATTACTTCATTCCCAATGAAGCATGTACAAATAAAGCTGTGGAAATATTTTCCCTATCCTTGTAAAACTAA

Function

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like

GO:

id name namespace
GO:0022904 respiratory electron transport chain biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
K03949 NDUFA5; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563579.2 True 540 mRNA 0.46 5 52204825 52207709

Neighbor

gene id symbol gene type direction distance location
LOC110490276 LOC106576110 coding upstream 28682 52154155 ~ 52176143 (+)
LOC110490275 LOC106576109 coding upstream 78520 52122586 ~ 52126305 (+)
LOC110490274 LOC106576108 coding upstream 130281 52064879 ~ 52074544 (+)
LOC110490742 LOC106609203 coding upstream 474291 51411245 ~ 51730534 (+)
LOC110490271 LOC106576088 coding upstream 800424 51386269 ~ 51404401 (+)
LOC110490279 LOC106576114 coding downstream 111913 52319622 ~ 52327848 (+)
LOC110490283 dus4l coding downstream 140415 52348124 ~ 52366962 (+)
LOC110490848 LOC106609256 coding downstream 758139 52965848 ~ 52968742 (+)
LOC110490290 LOC106609170 coding downstream 767903 52975612 ~ 53008441 (+)
LOC110490746 LOC106609171 coding downstream 800781 53008490 ~ 53021248 (+)
G1305033 NA non-coding upstream 94779 52068728 ~ 52110046 (+)
G1305026 NA non-coding upstream 162060 52042536 ~ 52042765 (+)
G1304932 NA non-coding upstream 255036 51949589 ~ 51949789 (+)
G1304931 NA non-coding upstream 256345 51948232 ~ 51948480 (+)
G1304895 LOC107662719 non-coding upstream 282838 51921348 ~ 51921987 (+)
G1305145 LOC106609192 non-coding downstream 5817 52213526 ~ 52238349 (+)
G1305176 NA non-coding downstream 94295 52302004 ~ 52302222 (+)
G1305183 NA non-coding downstream 104974 52312683 ~ 52312899 (+)
G1305175 NA non-coding downstream 121017 52328726 ~ 52329622 (+)
G1305193 NA non-coding downstream 125935 52333644 ~ 52334232 (+)
G1304886 NA other upstream 289815 51914597 ~ 51915010 (+)
G1304083 NA other upstream 551825 51584754 ~ 51653000 (+)
atxn7l1 LOC106576087 other upstream 845338 51351361 ~ 51382579 (+)
G1303950 LOC106576084 other upstream 905064 51299403 ~ 51299761 (+)
G1305302 NA other downstream 304920 52512629 ~ 52513050 (+)
sox5 LOC106576150 other downstream 1144908 53352462 ~ 53471763 (+)
G1306708 NA other downstream 1372832 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 1681519 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 2950297 55157706 ~ 55170847 (+)

Expression


Co-expression Network