LOC118938894 (cog5)


Basic Information

Item Value
gene id LOC118938894
gene name cog5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52208019 ~ 52278865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118938894
ATGTCAGAGTACTTGCAACCCACCCAGGTGGGCACGTCCCTCCAGGTGTTACGTAATCTGGGCAGTCTGAGGGAGACCATCAGTGTTGGTGGTAGAGGGCTACCGGACCACCATACAGGACAAACGTCACCACCGCCTTGGATATCAAGGGACTCACCCAGTCCGCTGACAACAGAGgtgcGCCCGGCAGAGCCCCAGGCAACACGGCAGCGTTCCGAGCTGCTCTCTGGACCAACCTAGAGAAACTCATGGACCAGATCAGTGCCGCTTGCGGACAGGTGCAACACCTCCAGAAGTTCTTGACGAAGATGAGAGACCCTGTCACTCACGTCTGCTTCATCAATGAGATCATGAAGGACGGCCAGCCTGATATCCTCTACACGTTTTGGAGTGatgtcacacacactctctcagtgGAGTTTCACCGTTGCACTAATTCCTCATCCTTCCTCAAGCAGGCATTAGAGGGAGAGTACCCTAAAAGCTTCTCTGTCTTTATAACGACCTGCGGCGTCGGCTGCTGCAGTACAGCTCCAGCATCCAGGGGGTGATTTCGAGCAGCGCAGGGCTGGACATCGCCATGGACCTGCccaccacagagacagacaaccaGGACCTCTTCACACATGCCAAACACGACTACAAtccagAAAAGGCTTTGAAGGACTCTCTGCTGCCCTACGAGGCAGCGTACCTCTCCAAGTCTCCGTCTCGTCTGTTTGACCCCGTCAACCTGGTGTTCCCCATGGGGGGACGTAACCCCCGCCCTCCCACGACGAACCGGACAGCACCATCAAGaccatcaccagCGAGCTGACCGTGGCGTCGGTAGACACAAGTCTGACTCTGGCGGTGGTCAAGAACGCTGCCAAGACCGTCCAGCTCTTCTGCGTCAAGTCTGAGCAGCTGGGGGATGCCAGTCAGGTGATGGGGCCTCTCACAGAAGGCCAGAGTAGGAACATGGCGGTGGTCAACTCCCTCTACAGACGACACCAAGATGTTGCTAAGGTGATATTGGGATTGGGGTCATGTCCTCCGGCTGCTGAACATGCTCTCACTGCTTCCCTAGAGGGAGCACAGGCTCTGATGACCAGTGCAGTACAGCCTCTCCTGCTGTCGGTCAGTGACTTCATCAACATCACTATGCATCAGGAAGACTTCTCTGggtcagtatacacacacactttaagaCACCTCAAGCTAGTCGCCCCCTTTCTACgtcTATGTCCTCCTCCGGGGAAGACGGACGTGCCCTGCTTCCTGTACATGCGAGACCAACAGGGCTTCGTGGGCCGCGCGATGGTGGACGACTTCCGCCACTTCCAGTGTGTCGACTTCACATACGACAACACGGAGAGCATCGCCCGGCGCTGCATCACACTGTTCATCCTCCACGCCAGCCTGCTGCGCCCCCCCCCTAGGGGAGGGAGGCAAGATGAGACTGGCAGGCTGACTTCGCTCAGATGGACCTGGCCTGTCGCTCCTCtctgtaggagagtgtctgagctgGGGGAAACCCTACCGCCTGCTGAGATCGTTCCGggaCCCGCTGTTCCAGAACAGTGAGCTGATAGCCAGCAGTCCAGCCGTGGGGGATCTGATTCCATACAGCACCCTGCTACACTTCCTTTTCATCTGAGCTCAGATCAcctcaccagAGAGCAGAGTGGTCCATCGCTCGCTACTCCCAGTGGCTGGATGACCACCCTTCAGAGAGAGACCGCCTTACACTCATTAGGGGTGCTCTGGAGGCCTACATGCAGAGTGTGAGGGCTCGTCAGGGGAAGGAGTTTGCCCCTGTCTACCCCATCATGGTCCAGCTGCTGCAGAGGGCCACCAGCGGAGCCCAAGACTCCAGGACCTGAGGGAACTACAGCTCCCATGATGCAACTGTCTGCACTTCACATGGGCATGGAGAACGGCTCAGTGAAGAACACATCCCAATATTATGAATGTTATGACTATAGAATTAGTAGAATGGACATGGCTATGAAAATCCTTTGGCTTTTTTTATGGGCCACCCAACAGGAGTTTCCATTATTGAAATGACTTCAGTGTTGCTCGTTTCTATGGATGTGATGAGCAGCAATTCAAACGGAAAACTACCCACAATAGTGTATGAAAAAGTCTGTTCTGCTAATTCTATGGCTATGCCACAGTGAATGGGAAATACACGCTAGCTAGTTATGGTTAACCTAATTTTGTACTATTAAATGCTTCATGGTGAACAATACTTATTATAAGGAATGATTGATGGTAGGGCTCTATCAAAGTGTAATTTTAATTTAAAGGAAATGTTCCTGCCGTGTTAGTGGAggctgcattcacggtaaacgatGTCGGTTCAGAGTGTGCTATCTGGGTTGAATAAAGCCCTTACTCTATTACACATAGCTGATTCAGCTCTTTCCCCTGTCTGGTCTATAGAACTGTTCATATGAGGTCTTGTCGATGTAAAGCTCTAAGGTTGTGGTTATAATAAAACAAGTTGTGCCTGAGGTGAAGGCTTGTATCTTGAGCCCTGTTTATACTTGGTAACATGCAGCATGTTTTGATGATTAAAATGACTGATCTTCCTGACCTCCAGAAGAAGTCCAGTATAAAATAACA
>TU1489160
AGGTGGGCACGTCCCTCCAGGTGTTACGTAATCTGGGCAGTCTGAGGGAGACCATCAGTGTTGGTGGTAGAGGGCTACCGCACCACCGCCTTGGATATCAAGGGACTCACCCAGTCCGCTGACAACAGAGgtgcGCCCGGCAGAGCCCCAGGCAACACGGCAGCGTTCCGAGCTGCTCTCTGGACCAACCTAGAGAAACTCATGGACCAGATCAGTGCCGCTTGCGGACAGGTGCAACACCTCCAGAAGTTCTTGACGAAGATGAGAGACCCTGTCACTCACGTCTGCTTCATCAATGAGATCATGAAGCCTCATCCTTCCTCAAGCAGGCATTAGAGGGAGAGTACCCTAAAAGCTTCTCTGTCTTTATAACGACCTGCGGCGTCGGCTGCTGCAGTACAGCTCCAGCATCCAGGGGGTGATTTCGAGCAGCGCAGGGCTGGACATCGCCATGGACCTGCccaccacagagacagacaaccaGGACCTCTTCACACATGCCAAACACGACTACAAtccagAAAAGGCTTTGAAGGACTCTCTGCTGCCCTACGAGGCAGCGTACCTCTCCAAGTCTCCGTCTCGTCTGTTTGACCCCGTCAACCTGGTGTTCCCCATGGGGGGACGTAACCCCCGCCCTCCCACGACGAACCGGACAGCACCATCAAGaccatcaccagCGAGCTGACCGTGGCGTCGGTAGACACAAGTCTGACTCTGGCGGTGGTCAAGAACGCTGCCAAGACCGTCCAGCTCTTCTGCGTCAAGTCTGAGCAGCTGGGGGATGCCAGTCAGGTGATGGGGCCTCTCACAGAAGGCCAGAGTAGGAACATGGCGGTGGTCAACTCCCTCTACAGACGACACCAAGATGTTGCTAAGgtcTATGTCCTCCTCCGGGGAAGACGGACGTGCCCTGCTTCCTGTACATGCGAGACCAACAGGGCTTCGTGGGCCGCGCGATGGTGGACGACTTCCGCCACTTCCAGTGTGTCGACTTCACATACGACAACACGGAGAGCATCGCCCGGCGCTGCATCACACTGTTCATCCTCCACGCCAGCCTGCTGCGCCCCCCCCCTAGGGGAGGGAGGCAAGATGAGACTGGCAGGCTGACTTCGCTCAGATGGACCTGGCCTGTCGCTCCTCtctgtaggagagtgtctgagctgGGGGAAACCCTACCGCCTGCTGAGATCGTTCCGggaCCCGCTGTTCCAGAACAGTGAGCTGATAGCCAGCAGTCCAGCCGTGGGGGATCTGATTCCATACAGCACCCTGCTACACTTCCTTTTCATCTGAGCTCAGATCAcctcaccagAGAGCAGAGTGGTCCATCGCTCGCTACTCCCAGTGGCTGGATGACCACCCTTCAGAGAGAGACCGCCTTACACTCATTAGGGGTGCTCTGGAGGCCTACATGCAGAGTGTGAGGGCTCGTCAGGGGAAGGAGTTTGCCCCTGTCTACCCCATCATGGTCCAGCTGCTGCAGAGGGCCACCAGCGGAGCCCAAGACTCCAGGACCTGAGGGAACTACAGCTCCCATGATGCAACTGTCTGCACTTCACATGGGCATGGAGAACGGCTCAGTGAAGAACACATCCCAATATTATGAATGTTATGACTATAGAATTAGTAGAATGGACATGGCTATGAAAATCCTTTGGCTTTTTTTATGGGCCACCCAACAGGAGTTTCCATTATTGAAATGACTTCAGTGTTGCTCGTTTCTATGGATGTGATGAGCAGCAATTCAAACGGAAAACTACCCACAATAGTGTATGAAAAAGTCTGTTCTGCTAATTCTATGGCTATGCCACAGTGAATGGGAAATACACGCTAGCTAGTTATGGTTAACCTAATTTTGTACTATTAAATGCTTCATGGTGAACAATACTTATTATAAGGAATGATTGATGGTAGGGCTCTATCAAAGTGTAATTTTAATTTAAAGGAAATGTTCCTGCCGTGTTAGTGGAggctgcattcacggtaaacgatGTCGGTTCAGAGTGTGCTATCTGGGTTGAATAAAGCCCTTACTCTATTACACATAGCTGATTCAGCTCTTTCCCCTGTCTGGTCTATAGAACTGTTCATATGAGGTCTTGTCGATGTAAAGCTCTAAGGTTGTGGTTATAATAAAACAAG
>TU1489161
TATGCACATTATCCTTTCTCCTCCTGTATACGAGAATATGAATTAGAGTAGTATATATGAATGCTATCTATGCACATTATCCTTTCTCCTCCTGCCTGCGCTGCTCCCTCCAGACCTCATTAGAGCCTGAAAGTACTTCAGTTCAAACCTGTATGAATCATTATAAAACGCTATATTATGCATTCACCAAATCAATCTACATTAAAACAATCTGCATATCATCCCTTAACGAGCAACTAATCACTCGCAAAGTCAGGGGATTAACATAATAATGAGCGGGAAAATGTCACCGTTTATTTTCTGTTCTTTTAATCAGGATAGTCTTTCTGTTTCAGTCTCATCCCTTCATCCATGCTCTAGTCTGGTACTCGGGGATAATGTGATGTTTCTAGTTCACGGGAGCAGAAAGACTGTTCGTGTGCATCAAAGCAGATGTTTACCTTGGCTGTCATTAAAACACAGAAGCCTCATCCTTCCTCAAGCAGGCATTAGAGGGAGAGTACCCTAAAAGCTTCTCTGTCTTTATAACGACCTGCGGCGTCGGCTGCTGCAGTACAGCTCCAGCATCCAGGGGGTGATTTCGAGCAGCGCAGGGCTGGACATCGCCATGGACCTGCccaccacagagacagacaaccaGGACCTCTTCACACATGCCAAACACGACTACAAtccagAAAAGGCTTTGAAGGACTCTCTGCTGCCCTACGAGGCAGCGTACCTCTCCAAGTCTCCGTCTCGTCTGTTTGACCCCGTCAACCTGGTGTTCCCCATGGGGGGACGTAACCCCCGCCCTCCCACGACGAACCGGACAGCACCATCAAGaccatcaccagCGAGCTGACCGTGGCGTCGGTAGACACAAGTCTGACTCTGGCGGTGGTCAAGAACGCTGCCAAGACCGTCCAGCTCTTCTGCGTCAAGTCTGAGCAGCTGGGGGATGCCAGTCAGGTGATGGGGCCTCTCACAGAAGGCCAGAGTAGGAACATGGCGGTGGTCAACTCCCTCTACAGACGACACCAAGATGTTGCTAAGgtcTATGTCCTCCTCCGGGGAAGACGGACGTGCCCTGCTTCCTGTACATGCGAGACCAACAGGGCTTCGTGGGCCGCGCGATGGTGGACGACTTCCGCCACTTCCAGTGTGTCGACTTCACATACGACAACACGGAGAGCATCGCCCGGCGCTGCATCACACTGTTCATCCTCCACGCCAGCCTGCTGCGCCCCCCCCCTAGGGGAGGGAGGCAAGATGAGACTGGCAGGCTGACTTCGCTCAGATGGACCTGGCCTGTCGCTCCTCtctgtaggagagtgtctgagctgGGGGAAACCCTACCGCCTGCTGAGATCGTTCCGggaCCCGCTGTTCCAGAACAGTGAGCTGATAGCCAGCAGTCCAGCCGTGGGGGATCTGATTCCATACAGCACCCTGCTACACTTCCTTTTCATCTGAGCTCAGATCAcctcaccagAGAGCAGAGTGGTCCATCGCTCGCTACTCCCAGTGGCTGGATGACCACCCTTCAGAGAGAGACCGCCTTACACTCATTAGGGGTGCTCTGGAGGCCTACATGCAGAGTGTGAGGGCTCGTCAGGGGAAGGAGTTTGCCCCTGTCTACCCCATCATGGTCCAGCTGCTGCAGAGGGCCACCAGCGGAGCCCAAGACTCCAGGACCTGAGGGAACTACAGCTCCCATGATGCAACTGTCTGCACTTCACATGGGCATGGAGAACGGCTCAGTGAAGAACACATCCCAATATTATGAATGTTATGACTATAGAATTAGTAGAATGGACATGGCTATGAAAATCCTTTGGCTTTTTTTATGGGCCACCCAACAGGAGTTTCCATTATTGAAATGACTTCAGTGTTGCTCGTTTCTATGGATGTGATGAGCAGCAATTCAAACGGAAAACTACCCACAATAGTGTATGAAAAAGTCTGTTCTGCTAATTCTATGGCTATGCCACAGTGAATGGGAAATACACGCTAGCTAGTTATGGTTAACCTAATTTTGTACTATTAAATGCTTCATGGTGAACAATACTTATTATAAGGAATGATTGATGGTAGGGCTCTATCAAAGTGTAATTTTAATTTAAAGGAAATGTTCCTGCCGTGTTAGTGGAggctgcattcacggtaaacgatGTCGGTTCAGAGTGTGCTATCTGGGTTGAATAAAGCCCTTACTCTATTACACATAGCTGATTCAGCTCTTTCCCCTGTCTGGTCTATAGAACTGTTCATATGAGGTCTTGTCGATGTAAAGCTCTAAGGTTGTGGTTATAATAAAACAAG

Function

symbol description
cog5 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118938894 False 2610 mRNA 0.53 17 52208019 52278865
TU1489160 False 2148 lncRNA 0.53 13 52208141 52278520
TU1489161 True 2304 lncRNA 0.50 10 52208141 52256858

Neighbor

gene id symbol gene type direction distance location
LOC110490278 LOC106576113 coding downstream 4923 52193062 ~ 52203096 (-)
LOC110490277 LOC106576111 coding downstream 24115 52179419 ~ 52183904 (-)
LOC110490745 LOC106576126 coding downstream 76981 52127987 ~ 52131038 (-)
LOC118936382 NA coding downstream 388168 51817108 ~ 51819851 (-)
LOC110490744 LOC106576129 coding downstream 415174 51785488 ~ 51793354 (-)
LOC110490281 NA coding upstream 58906 52337771 ~ 52347933 (-)
slco1c1 LOC106576120 coding upstream 97147 52376012 ~ 52437134 (-)
LOC110490286 LOC106576121 coding upstream 181688 52460553 ~ 52545171 (-)
LOC118938978 NA coding upstream 330306 52609171 ~ 52609300 (-)
LOC110490287 LOC106576122 coding upstream 331860 52610725 ~ 52628311 (-)
G1305368 NA non-coding downstream 319 52205393 ~ 52207700 (-)
G1305356 NA non-coding downstream 31877 52174990 ~ 52176142 (-)
G1305350 NA non-coding downstream 36442 52161567 ~ 52171577 (-)
G1305341 NA non-coding downstream 58387 52149372 ~ 52149632 (-)
G1305325 NA non-coding downstream 58676 52115520 ~ 52149343 (-)
G1305417 NA non-coding upstream 12408 52291273 ~ 52291545 (-)
G1305423 NA non-coding upstream 21309 52300174 ~ 52300451 (-)
G1305427 NA non-coding upstream 26055 52304920 ~ 52305178 (-)
G1305434 NA non-coding upstream 33871 52312736 ~ 52312953 (-)
G1305436 NA non-coding upstream 36288 52315153 ~ 52315374 (-)
G1304988 NA other downstream 217846 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 285491 51921495 ~ 51922528 (-)
LOC110490264 LOC106576080 other downstream 1002158 51199223 ~ 51205927 (-)
LOC110490244 LOC106609225 other downstream 1907012 50290050 ~ 50301082 (-)
LOC110490288 LOC106609184 other upstream 528118 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 775984 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 1477650 53756479 ~ 53786697 (-)
G1307309 NA other upstream 1620445 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1871179 54150044 ~ 54150540 (-)

Expression


Co-expression Network