LOC110490279 (LOC106576114)


Basic Information

Item Value
gene id LOC110490279
gene name LOC106576114
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52319622 ~ 52327848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563578.2
GGATGatacagagagaaatagaaagtgTGAGAGACACGCTgccagagaagggagggagggtgggcgAGGTGAGTAGGAAGGGCTATTAGTTCCCCCGAGACGGAGCGAGTGAgagtgggagaaggagaggagagcgcAGAACAGCCAGAGAGCAGAACAGTGATCTCTCTACTCCAGCCTGGATCCTTACACACCCTGAGGACTTAACTACACCATCTTACCTGTCACGCACAGCCAGAAACCGCCTCAGCGGCTTCAGGTCcttttctttcgctctctcgtcctccttcactctacctgGGAGGGAGTGTTCCACCCGGCTATCTATGCTGACAGTGCTGTGGGGTAGAggacggagacacacacacgcgacTACCTCAGAGAACAAGGACGACGATTGAGGGAGGAAAAATAAACGGAAGGATGATGTCATCCCCTGATTTGTCCCACTCTCCTACtctgtgacagaaagagagagagagagcgcgcaccAAATGCCACATAGCTGATGGCCCAGTGTTGTAAtatagtctcctctctctctccaaagcaGCTAATGACCTTCCTCCCAGCCTGGTCTGACTTTGAATAAGGTGCCACAGCACGGAGGTGATCCTGCCTCACCCCAGTGGAATTACAAAGTGTGAGGAGACGGAAACGCCATTgacctttactctcctctctggAAGGTGATGGAGGGGTGTTTCTGAAGGGTGTCGGAGGGAATACGTAcagaaggaagaggggaggacAGTTGAGTATCAGCCAGGCACTGCTCTGCCTCTGTTAAGATCCGAGGAGGACTACAGGTCAAATAACAAAAGCTTGCCAAGCAGCTGCCTAAAAGAAACCATTCATTTAGTAAAACCACGTGGCTGGATGCTACGATGCACATCCTCTCCCTGCCCACCGCGGACGACGAGTGCGTGTGTTCCTGCGTTTAATGAATCCTCGGCGCTTTCCCCAAACCGGAatacagtgttttttttattggaTGTACGAGAGTATAGGGCCGTCCTCTGTGATCCATCACTGTTGTATAAAGCCTCTGGGTAAAGTAAATGGAGAAATGTTTTGAAGGTGGACTGGTCTTTCTCTCGTGGTGGAGCTGAGTTTGTATCCGTGGAAATAGAAAAGGAAGGATCCAAAGAAAGGCAGTTTCAGTTGGCCCCGACTGCACTCATCTGCATCATAACACTCCCATTATTTAGACAAAAGGCTGCACCATCAGGAATGAAAGTGCGCCAAGTGGAGATTTACTGCAttggtattactactactataaAAGCATTGCTACTACAGAACTATGGTTGGTTCTTGTGATTTCCTGTCGGGGCCTCAGCAAGTCGGCTCCGGCTGGTTCATGGACTCTTGAAGGGGAGACGGCACACGagggagagGATAATGCATACCCCTCCTGTGCTGATCTCAGAAGCCACCATGAGCAACGTGACTGTCCTCGACACCTCGGAACCCTCTGACCTTGATATGACCCAGTCTGCTGCCCCCTACCCCGTCAGCTTCCAGGTGTCGCTGACAGGGTTCCTGCTGCTAGAGATCGTGCTGGGCCTAAGCAGCAACCTGACAGTGCTGGTCCTTTACTGCATGAAGCAGAACCTCATCACCTCCGTGTCCAACATCGTCACCATGAATCTGCACGTCCTAGACGTACTAGTTTGTGTGTCTTGCATCCCTCTGACTGCCGTGGTAATACTCCTCCCCCTAGAGGCTGATACGGCGCTGGTCTGCTGCTTCCACGAGGCCTGTGTCTCCTTCGCTAGCGTAGCCACTGCCTCGAACGTGCTAGCCATCACCGTCGACCGCTACGACATCTCAGTGCGTCCAGCCAACCGCATGCTAACCATGGGCCGCGCCGTGGCTCTGCTGGGCTTGATTTGGGCTATGTCCTTCTTCAGTTTCCTGGTCCCCTTCATGGAGGTGGGCTTCTTCAGCGATTTTGGCTCGGAGTCTGTCAACCAGACTGCAGTCGCCTCTGTGGTCCATACTAACGAGTACTACACAGAGCTGGGGCTGTATTACCACCTCCTGGCTCAGATCCCCATCTTTTTCTTCACGGCCGTAGTCATGCTGGTGACCTACTACAAGATACTCCAGGCCCTGAACATCCGCATCGGGACCCGCTTCCAACACAACCAGCCCAAGAAGAAGCTCCGCAAGAAGAAGACCATCTCCTTGACCACTGCAACGCAGGTGGAATCTACAGATGCGTCCCAGGGCAGCGGGGCGGTCAGAGGGGGCGGAAACCCACCTGCTGTCCTGTCCATGCGGACCTCCGTCTCCGTCCTCATGGCTCTGCGCAGGGCTGTTAAACGCCACCGGGAACGGCGGGAGAGGCAGAAACGCGTCTTCAGGATGTCCCTACTCATCATCTCCACCTTCCTGCTCTGCTGGACGCCCATCACAGTCCTCAACACGGTCATCCTCAGCGCAGGGCCCTCAGACTTCACGGTCAAGTTGCGGTTGGGTTTCCTGGTCATGGCCTACGGGACGACCATCTTTCACCCACTGCTCTACGCCTTCACCAGGCAAAAGTTCCAGAAGGTGTTGAAGAGCAAGATGAAGAAGAGGGTGGTGTCTGTGGTGGAGGCTGAGCCCATGCCCAACAACGTGGTCATTCACAACTCCTGGATCGACCCCAAGAGGAACAACAAGAAAGTCACCTTCGAGGAGACTGAGGTCAGGCAGAAGTGTCTATCTTCCCAGGACCTGGAACAGAACAACATCGTCTGTCAACCATGAtaaggcggcagggtagcctagtggtgagagcgttggactagtaactggaagttgcaagttcaaatccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataacaatttgttcttaactgacatgcctagttaaataaaatgaaaaaaaaaaaatgaaaaaaaaaggaGATCGTGAAGATCGGCTTGGAGGCACTTGTTAGGCCGACAGAGGTCAACAGAGGTGGCAGAGTGGGATAATGGGTGTCCATCTTCAGAGAAAGTGGACTTAAGACAATTTCTGAGAAGCCATTGAATATCTGCATGGCTCGAGGGAGTTGGTAGACATGCGTCTGAGCCAAGGTCAAGATAGAACAGCTTCTGTTCAGAAGATGTAGAATAAGACAATGTGGATTATGAGGACGTGAAATAAGAATGAAATGGAATAAGCAACGGACACTCATACAAGGTGACAAAACATTATCAGGAACCAACTCATTTAAAAAACGGGAAACCACTAATGTAAATGAAAGTGTTTTACCTGTATAGTTACCCTAAAGGGGATCATGTGTTACTATTTATTGTAAGAGGTTGATGTGGCGTCAAGGACAATTTAAACTAAATACCGTACTGCATGGTGTTGTTATAAAACGTGACATAATTATTGTGTATAGTCATGTACAGTGTATAGAATAAAtatatgtttacaacacacaaaaggaaagattcacccattttgaatatTATTTGAAATTTGTGCATCTCTGAGCTATGAGCAAAATGCATCATACCAGCTGTgtttctgcctgcttgaatggCTAATAGCTCAGAGAAACAggaaaacatgaaatgaccccTGGACTCGATAGAACCCAGCTCAGAGATAGACAAATATGATAGAACATTTAAAATGGGTGACTCTTTCCGTTAAGCCCTAAGTATTTGTCGTTTTATAATAAATAACGTGAAAAAAGTTTAGAGGGGATTCTACTGGGTATTCTGGTTAAATGGTCTTCTGTCACATATACTGCACTTTATTACGCTTTCGTAAACTTGTCGACTTAGGCACTGAGGACATCTAGCCAGTGTAAAGCCACAAATACTTACATGTGAAATTCCACTTCCCATTTCCTGTCCTCTGAGAGTATCTTTCCATGTGCCTGTTATATGTGTGATTTAGTGTAAGATGGGGGGATAGAAAGACGCCAGCAGCACTTTGCAACCTCAGCGAGAGTCTGCAATCTGAAAACTAATCACAGCATTACTAAGACGTGACCTTGTGATTTCAACACATAATCAGCGCCTGTAGCCTAACCATCCTGAGGTGACTCCAGCTGCTCTACCGGCCATAACACAGCTGTTATGTTGCTTCTCTTATTATCTAGCCATCTAGCCACAGGTCGGGGTGAAGAGaacaacatggctgccataactggAGCCTGCTTCTTTTCATAATCACACTGATGCCAACTGGCAAATCAATCTGTATTTTCTGGTTGGAGTTGGAGgacactgagtgagtgagtgagtgagtgagtgagggaggacTCGGACCTACTGCGGGCCATAGCGCTTAGCAAGGA

Function

NR:

description
probable G-protein coupled receptor 22

GO: NA

KEGG:

id description
K04319 GPR22; G protein-coupled receptor 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563578.2 True 4366 mRNA 0.49 5 52319622 52327848

Neighbor

gene id symbol gene type direction distance location
LOC110490280 LOC106609195 coding upstream 111913 52204825 ~ 52207709 (+)
LOC110490276 LOC106576110 coding upstream 143479 52154155 ~ 52176143 (+)
LOC110490275 LOC106576109 coding upstream 193317 52122586 ~ 52126305 (+)
LOC110490274 LOC106576108 coding upstream 245078 52064879 ~ 52074544 (+)
LOC110490742 LOC106609203 coding upstream 589088 51411245 ~ 51730534 (+)
LOC110490283 dus4l coding downstream 20276 52348124 ~ 52366962 (+)
LOC110490848 LOC106609256 coding downstream 638000 52965848 ~ 52968742 (+)
LOC110490290 LOC106609170 coding downstream 647764 52975612 ~ 53008441 (+)
LOC110490746 LOC106609171 coding downstream 680642 53008490 ~ 53021248 (+)
LOC110490293 LOC106609177 coding downstream 701788 53029636 ~ 53035717 (+)
G1305183 NA non-coding upstream 6723 52312683 ~ 52312899 (+)
G1305176 NA non-coding upstream 17400 52302004 ~ 52302222 (+)
G1305145 LOC106609192 non-coding upstream 81273 52213526 ~ 52238349 (+)
G1305033 NA non-coding upstream 209576 52068728 ~ 52110046 (+)
G1305026 NA non-coding upstream 276857 52042536 ~ 52042765 (+)
G1305175 NA non-coding downstream 878 52328726 ~ 52329622 (+)
G1305193 NA non-coding downstream 5796 52333644 ~ 52334232 (+)
G1305194 NA non-coding downstream 7401 52335249 ~ 52355427 (+)
G1305196 NA non-coding downstream 19519 52347367 ~ 52347924 (+)
G1305268 NA non-coding downstream 126475 52454323 ~ 52456864 (+)
G1304886 NA other upstream 404612 51914597 ~ 51915010 (+)
G1304083 NA other upstream 666622 51584754 ~ 51653000 (+)
LOC110490271 LOC106576088 other upstream 921660 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 other upstream 960135 51351361 ~ 51382579 (+)
G1303950 LOC106576084 other upstream 1019861 51299403 ~ 51299761 (+)
G1305302 NA other downstream 184781 52512629 ~ 52513050 (+)
sox5 LOC106576150 other downstream 1024769 53352462 ~ 53471763 (+)
G1306708 NA other downstream 1252693 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 1561380 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 2830158 55157706 ~ 55170847 (+)

Expression


Co-expression Network