LOC110490281


Basic Information

Item Value
gene id LOC110490281
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52337771 ~ 52347933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036125.1
GAACATGGAGGGTAGTAGAGAAGCATCAACGAATTCACTGCTAAATGATGGATAAGGACAAAGATCGTTGACCCCTACAATAAGATTGTAGCTAGGACTGCCCAGCTCGCCAGATTGCAGGTGGCGTGTGACCTGCTGCAAAGGATCATCAGAAACCTGTACCTGTCCAAGCGTCTGCAGGGCCAGCTCCAGGGGGGAAGCAGGGACATTACCAAGGCTGCCCAGAGCCTCAACG
>XR_002468690.2
GAACATGGAGGGTAGTAGAGAAGCATCAACGAATTCACTGCTAAATGATGgtgtaTCAGCCACGTAGTCGTTTAGGAATGAGAGCTACCGAGTTGACTGTGCAGTCCATCATTGACAACTTACAGCAAGGCAGagtcagatggattaccaggacgtgtactacgagcatgtgctgaccaactggcaagtgtcttcactgacattttcaacctctccctgtctgagtctgtaattccaacatgtttcaagcagaccaccatagtccctgaaAGATTAttggaatctgtgtgggtagctggacaggtaggatgactggcaatagtgaaggtgaacagatggtcaggtgacagaggaatggatgagactgaggcaggaattcctttaaccacaAAGTGGTATATGTACTGGTTAGTTTGTCTGTGCTGTATAACAAAAGAAACAGAATAACATGTACCCAATAAAAATTCAAATCAGAAAGTCAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036125.1 False 235 mRNA 0.53 3 52337771 52347933
XR_002468690.2 True 483 mRNA 0.43 2 52347360 52347933

Neighbor

gene id symbol gene type direction distance location
LOC118938894 cog5 coding downstream 58906 52208019 ~ 52278865 (-)
LOC110490278 LOC106576113 coding downstream 134675 52193062 ~ 52203096 (-)
LOC110490277 LOC106576111 coding downstream 153867 52179419 ~ 52183904 (-)
LOC110490745 LOC106576126 coding downstream 206733 52127987 ~ 52131038 (-)
LOC118936382 NA coding downstream 517920 51817108 ~ 51819851 (-)
slco1c1 LOC106576120 coding upstream 28079 52376012 ~ 52437134 (-)
LOC110490286 LOC106576121 coding upstream 112620 52460553 ~ 52545171 (-)
LOC118938978 NA coding upstream 261238 52609171 ~ 52609300 (-)
LOC110490287 LOC106576122 coding upstream 262792 52610725 ~ 52628311 (-)
LOC110490288 LOC106609184 coding upstream 282905 52630838 ~ 52809711 (-)
G1305442 NA non-coding downstream 6037 52331422 ~ 52331734 (-)
G1305436 NA non-coding downstream 22397 52315153 ~ 52315374 (-)
G1305434 NA non-coding downstream 24818 52312736 ~ 52312953 (-)
G1305427 NA non-coding downstream 32593 52304920 ~ 52305178 (-)
G1305423 NA non-coding downstream 37320 52300174 ~ 52300451 (-)
G1305466 NA non-coding upstream 12187 52360120 ~ 52394173 (-)
G1305524 NA non-coding upstream 106801 52454734 ~ 52456997 (-)
G1305535 NA non-coding upstream 130516 52478449 ~ 52478723 (-)
G1305561 NA non-coding upstream 166596 52514529 ~ 52514753 (-)
G1305565 NA non-coding upstream 173322 52521255 ~ 52521476 (-)
G1304988 NA other downstream 347598 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 415243 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 544417 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1131910 51199223 ~ 51205927 (-)
LOC110490244 LOC106609225 other downstream 2036764 50290050 ~ 50301082 (-)
G1306232 LOC106576137 other upstream 706916 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 1408582 53756479 ~ 53786697 (-)
G1307309 NA other upstream 1551377 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1802111 54150044 ~ 54150540 (-)

Expression


Co-expression Network