LOC110490287 (LOC106576122)


Basic Information

Item Value
gene id LOC110490287
gene name LOC106576122
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52610725 ~ 52628311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944578.1
GGTCCACAATGCGGGGGACTACGTCATGGTTATGCCTCCTCCCCTCGCGTCCCTTTTGAACGCTCATGGTGAAGCAGCGCATGCGATTGGGAGAAAGAACCAACTTTTGGGGGGGTAGTAGCCTACAACAGAAAATAGCTTACTAAGAGCTGTGAACATGGCTGCAGTTACAACCAACCGTACCGAACAAGACTCCACACCGGCAAACGAGCAAAATGGAACATTGGCCAAGGGAGAGAACAGGAATAATAAGCAGGGCCCTGCAGACTCGAAACAGGAACCGGGTGACAACGAGGACGAAACAGAAATGGACGTGAGCAACGGAGACAGCAAAGAGGAGAAGCTTTCAGTCGCACCAGAAGTCGCCAAAGAATCGGTTTTACCCACGGAAAACGGCAACAAAGAAGACGAACCGGCCTGTGAACTGTCTGAACCGGTTAAAAGTCCCGTGGAGGGAATCCCTGCGAGTAGCACCGAAACCGGGGAGAGCACCGTGGAGCTGAATCAAGAACAAAGAGAGGAGAGCGTGTCCTCGCTTCCTAGCTCCGACAAGACCAAAAGCGAGGAATCCACGGAGAAAACCGACCACGGTATCAAAAGACGGGCCAGTGTCGAGATATCCTCCTCGGATGGAGAACCTCTCAGTCGAATGGATTCGGAAGACAGGAACAGAGCAGGGGAGCAGCTGGAGGCAGGCAGccttatgagtatcaGCAGTACTCTGATGGACATGGAGAGCACAGCGTCCAGCGGGCGCTCCACACCTGCCATGATGAACGGGCACGGCCCGGGCACCGCCACCCCGTCGGTGGGTAAGAGCGTGGCATACACCTGCTGCTGGGACCAGTGCCAGCTCCTCTTTACCACCAGCCCAGACCTGGCTGAGCACATCAGGGGCGTGCACGTGGACGGACAACGGGGAgggGTTTTTGTGTGCCTGTGGAAAGGCTGCAAGGTGTACAACACCCCGTCGACCAGTCAGAGCTGGCTCCAGAGACACATGGTCTCACACAGCGGAGACAAACCATTCAAGTGTGTGGTGGGGGGCTGCAATGCCACGTTTGCCTCCCAGGGGGGGCTAGCGCGCCACGTACCCACCCACTTCAGCTCCCAGAACTCCAACAAGCTGGCCAATCAGGGCAAGATGAAGGAGGATTCACCTTCGAAGGCGGGGCTTAACAAGAGGCGGAAACTCAAGAACAAACGCAGGCGGTCTTTACtGTGTTCTGTCCCTCCAGCACGACCTCACGACTTCTTTGATGCCCAGACCATGGATGCTATCAGACACCGGGCCATCTGCCTCAACCTGGCTACACATATAGAGAGCCTGGGCAACGGACACAGTGTGGTGTTTCACAGCACGGTAATAGCGAGGAGGAAGGAAGATTCTGGAAAGGTTAAAGTCCTCCTCCACTGGACTCCCGAGGACATaCTACCTGATGTGTGGGTGAATGAGAGTGACCGGCCACAGCAGAAGACCAAGGTGGTCCACCTCTCCCAGCTGCCCCAGGAGACACACGTACTGCTGGACCCCAacatatacagGATGTTCTTCTAGAGACTAAGGAGGACCAATCAAAAGGGACTCGAGCAGGAGCCTGACGATGTCACCTGGCACAGGAAGTCCCCATGTCATATCCTGTCTGGGCAGGAGTGGAGAAGACCAGAGATTTCAATACCTCTTTTATTTCCCCCCTTTTTTCTTTAACTTTCTGCTCTTTTCACTTTCTTTTCAATGTCAAATTCCTCCAAATGATGAAGTGAATTTAGTATTTGTTTTCAATGGTTTCTGAAAATACACTCTATACACAGTAGTGTGCTGACACCTCTTCAAATAagtgaatttggctatttcagccacacccgttgctgccaggtgtgttaaattgagcacacagccatgcgatctccgtagacaaacattggcagtagaatgaagtgggtttccatggccgagcagccacacacaagcctaagatcaccatgcac
>XM_036944579.1
GGTCCACAATGCGGGGGACTACGTCATGGTTATGCCTCCTCCCCTCGCGTCCCTTTTGAACGCTCATGGTGAAGCAGCGCATGCGATTGGGAGAAAGAACCAACTTTTGGGGGGGTAGTAGCCTACAACAGAAAATAGCTTACTAAGAGCTGTGAACATGGCTGCAGTTACAACCAACCGTACCGAACAAGACTCCACACCGGCAAACGAGCAAAATGGAACATTGGCCAAGGGAGAGAACAGGAATAATAAGCAGGGCCCTGCAGACTCGAAACAGGAACCGGGTGACAACGAGGACGAAACAGAAATGGACGTGAGCAACGGAGACAGCAAAGAGGAGAAGCTTTCAGTCGCACCAGAAGTCGCCAAAGAATCGGTTTTACCCACGGAAAACGGCAACAAAGAAGACGAACCGGCCTGTGAACTGTCTGAACCGGTTAAAAGTCCCGTGGAGGGAATCCCTGCGAGTAGCACCGAAACCGGGGAGAGCACCGTGGAGCTGAATCAAGAACAAAGAGAGGAGAGCGTGTCCTCGCTTCCTAGCTCCGACAAGACCAAAAGCGAGGAATCCACGGAGAAAACCGACCACGGTATCAAAAGACGGGCCAGTGTCGAGATATCCTCCTCGGATGGAGAACCTCTCAGTCGAATGGATTCGGAAGACAGGAACAGAGCAGGGGAGCAGCTGGAGGCAGGCAGccttatgagtatcaGCAGTACTCTGATGGACATGGAGAGCACAGCGTCCAGCGGGCGCTCCACACCTGCCATGATGAACGGGCACGGCCCGGGCACCGCCACCCCGTCGGTGGGTAAGAGCGTGGCATACACCTGCTGCTGGGACCAGTGCCAGCTCCTCTTTACCACCAGCCCAGACCTGGCTGAGCACATCAGGGGCGTGCACGTGGACGGACAACGGGGAgggGTTTTTGTGTGCCTGTGGAAAGGCTGCAAGGTGTACAACACCCCGTCGACCAGTCAGAGCTGGCTCCAGAGACACATGGTCTCACACAGCGGAGACAAACCATTCAAGTGTGTGGTGGGGGGCTGCAATGCCACGTTTGCCTCCCAGGGGGGGCTAGCGCGCCACGTACCCACCCACTTCAGCTCCCAGAACTCCAACAAGCTGGCCAATCAGGGCAAGATGAAGGAGGATTCACCTTCGAAGGCGGGGCTTAACAAGAGGCGGAAACTCAAGAACAAACGCAGGCGGTCTTTACCACGACCTCACGACTTCTTTGATGCCCAGACCATGGATGCTATCAGACACCGGGCCATCTGCCTCAACCTGGCTACACATATAGAGAGCCTGGGCAACGGACACAGTGTGGTGTTTCACAGCACGGTAATAGCGAGGAGGAAGGAAGATTCTGGAAAGGTTAAAGTCCTCCTCCACTGGACTCCCGAGGACATaCTACCTGATGTGTGGGTGAATGAGAGTGACCGGCCACAGCAGAAGACCAAGGTGGTCCACCTCTCCCAGCTGCCCCAGGAGACACACGTACTGCTGGACCCCAacatatacagGATGTTCTTCTAGAGACTAAGGAGGACCAATCAAAAGGGACTCGAGCAGGAGCCTGACGATGTCACCTGGCACAGGAAGTCCCCATGTCATATCCTGTCTGGGCAGGAGTGGAGAAGACCAGAGATTTCAATACCTCTTTTATTTCCCCCCTTTTTTCTTTAACTTTCTGCTCTTTTCACTTTCTTTTCAATGTCAAATTCCTCCAAATGATGAAGTGAATTTAGTATTTGTTTTCAATGGTTTCTGAAAATACACTCTATACACAGTAGTGTGCTGACACCTCTTCAAATAagtgaatttggctatttcagccacacccgttgctgccaggtgtgttaaattgagcacacagccatgcgatctccgtagacaaacattggcagtagaatgaagtgggtttccatggccgagcagccacacacaagcctaagatcaccatgcac
>XM_021563588.2
CACAATGCGGGGGACTACGTCATGGTTATGCCTCCTCCCCTCGCGTCCCTTTTGAACGCTCATGGTGAAGCAGCGCATGCGATTGGGAGAAAGAACCAACTTTTGGGGGGGTAGTAGCCTACAACAGAAAATAGCTTACTAAGAGCTGTGAACATGGCTGCAGTTACAACCAACCGTACCGAACAAGACTCCACACCGGCAAACGAGCAAAATGGAACATTGGCCAAGGGAGAGAACAGGAATAATAAGCAGGGCCCTGCAGACTCGAAACAGGAACCGGGTGACAACGAGGACGAAACAGAAATGGACGTGAGCAACGGAGACAGCAAAGAGGAGAAGCTTTCAGTCGCACCAGAAGTCGCCAAAGAATCGGTTTTACCCACGGAAAACGGCAACAAAGAAGACGAACCGGCCTGTGAACTGTCTGAACCGGTTAAAAGTCCCGTGGAGGGAATCCCTGCGAGTAGCACCGAAACCGGGGAGAGCACCGTGGAGCTGAATCAAGAACAAAGAGAGGAGAGCGTGTCCTCGCTTCCTAGCTCCGACAAGACCAAAAGCGAGGAATCCACGGAGAAAACCGACCACGGTATCAAAAGACGGGCCAGTGTCGAGATATCCTCCTCGGATGGAGAACCTCTCAGTCGAATGGATTCGGAAGACAGtatcaGCAGTACTCTGATGGACATGGAGAGCACAGCGTCCAGCGGGCGCTCCACACCTGCCATGATGAACGGGCACGGCCCGGGCACCGCCACCCCGTCGGTGGGTAAGAGCGTGGCATACACCTGCTGCTGGGACCAGTGCCAGCTCCTCTTTACCACCAGCCCAGACCTGGCTGAGCACATCAGGGGCGTGCACGTGGACGGACAACGGGGAgggGTTTTTGTGTGCCTGTGGAAAGGCTGCAAGGTGTACAACACCCCGTCGACCAGTCAGAGCTGGCTCCAGAGACACATGGTCTCACACAGCGGAGACAAACCATTCAAGTGTGTGGTGGGGGGCTGCAATGCCACGTTTGCCTCCCAGGGGGGGCTAGCGCGCCACGTACCCACCCACTTCAGCTCCCAGAACTCCAACAAGCTGGCCAATCAGGGCAAGATGAAGGAGGATTCACCTTCGAAGGCGGGGCTTAACAAGAGGCGGAAACTCAAGAACAAACGCAGGCGGTCTTTACtGTGTTCTGTCCCTCCAGCACGACCTCACGACTTCTTTGATGCCCAGACCATGGATGCTATCAGACACCGGGCCATCTGCCTCAACCTGGCTACACATATAGAGAGCCTGGGCAACGGACACAGTGTGGTGTTTCACAGCACGGTAATAGCGAGGAGGAAGGAAGATTCTGGAAAGGTTAAAGTCCTCCTCCACTGGACTCCCGAGGACATaCTACCTGATGTGTGGGTGAATGAGAGTGACCGGCCACAGCAGAAGACCAAGGTGGTCCACCTCTCCCAGCTGCCCCAGGAGACACACGTACTGCTGGACCCCAacatatacagGATGTTCTTCTAGAGACTAAGGAGGACCAATCAAAAGGGACTCGAGCAGGAGCCTGACGATGTCACCTGGCACAGGAAGTCCCCATGTCATATCCTGTCTGGGCAGGAGTGGAGAAGACCAGAGATTTCAATACCTCTTTTATTTCCCCCCTTTTTTCTTTAACTTTCTGCTCTTTTCACTTTCTTTTCAATGTCAAATTCCTCCAAATGATGAAGTGAATTTAGTATTTGTTTTCAATGGTTTCTGAAAATACACTCTATACACAGTAGTGTGCTGACACCTCTTCAAATAagtgaatttggctatttcagccacacccgttgctgccaggtgtgttaaattgagcacacagccatgcgatctccgtagacaaacattggcagtagaatgaagtgggtttccatggccgagcagccacacacaagcctaagatcaccatgca
>XM_021563589.2
CACAATGCGGGGGACTACGTCATGGTTATGCCTCCTCCCCTCGCGTCCCTTTTGAACGCTCATGGTGAAGCAGCGCATGCGATTGGGAGAAAGAACCAACTTTTGGGGGGGTAGTAGCCTACAACAGAAAATAGCTTACTAAGAGCTGTGAACATGGCTGCAGTTACAACCAACCGTACCGAACAAGACTCCACACCGGCAAACGAGCAAAATGGAACATTGGCCAAGGGAGAGAACAGGAATAATAAGCAGGGCCCTGCAGACTCGAAACAGGAACCGGGTGACAACGAGGACGAAACAGAAATGGACGTGAGCAACGGAGACAGCAAAGAGGAGAAGCTTTCAGTCGCACCAGAAGTCGCCAAAGAATCGGTTTTACCCACGGAAAACGGCAACAAAGAAGACGAACCGGCCTGTGAACTGTCTGAACCGGTTAAAAGTCCCGTGGAGGGAATCCCTGCGAGTAGCACCGAAACCGGGGAGAGCACCGTGGAGCTGAATCAAGAACAAAGAGAGGAGAGCGTGTCCTCGCTTCCTAGCTCCGACAAGACCAAAAGCGAGGAATCCACGGAGAAAACCGACCACGGTATCAAAAGACGGGCCAGTGTCGAGATATCCTCCTCGGATGGAGAACCTCTCAGTCGAATGGATTCGGAAGACAGtatcaGCAGTACTCTGATGGACATGGAGAGCACAGCGTCCAGCGGGCGCTCCACACCTGCCATGATGAACGGGCACGGCCCGGGCACCGCCACCCCGTCGGTGGGTAAGAGCGTGGCATACACCTGCTGCTGGGACCAGTGCCAGCTCCTCTTTACCACCAGCCCAGACCTGGCTGAGCACATCAGGGGCGTGCACGTGGACGGACAACGGGGAgggGTTTTTGTGTGCCTGTGGAAAGGCTGCAAGGTGTACAACACCCCGTCGACCAGTCAGAGCTGGCTCCAGAGACACATGGTCTCACACAGCGGAGACAAACCATTCAAGTGTGTGGTGGGGGGCTGCAATGCCACGTTTGCCTCCCAGGGGGGGCTAGCGCGCCACGTACCCACCCACTTCAGCTCCCAGAACTCCAACAAGCTGGCCAATCAGGGCAAGATGAAGGAGGATTCACCTTCGAAGGCGGGGCTTAACAAGAGGCGGAAACTCAAGAACAAACGCAGGCGGTCTTTACCACGACCTCACGACTTCTTTGATGCCCAGACCATGGATGCTATCAGACACCGGGCCATCTGCCTCAACCTGGCTACACATATAGAGAGCCTGGGCAACGGACACAGTGTGGTGTTTCACAGCACGGTAATAGCGAGGAGGAAGGAAGATTCTGGAAAGGTTAAAGTCCTCCTCCACTGGACTCCCGAGGACATaCTACCTGATGTGTGGGTGAATGAGAGTGACCGGCCACAGCAGAAGACCAAGGTGGTCCACCTCTCCCAGCTGCCCCAGGAGACACACGTACTGCTGGACCCCAacatatacagGATGTTCTTCTAGAGACTAAGGAGGACCAATCAAAAGGGACTCGAGCAGGAGCCTGACGATGTCACCTGGCACAGGAAGTCCCCATGTCATATCCTGTCTGGGCAGGAGTGGAGAAGACCAGAGATTTCAATACCTCTTTTATTTCCCCCCTTTTTTCTTTAACTTTCTGCTCTTTTCACTTTCTTTTCAATGTCAAATTCCTCCAAATGATGAAGTGAATTTAGTATTTGTTTTCAATGGTTTCTGAAAATACACTCTATACACAGTAGTGTGCTGACACCTCTTCAAATAagtgaatttggctatttcagccacacccgttgctgccaggtgtgttaaattgagcacacagccatgcgatctccgtagacaaacattggcagtagaatgaagtgggtttccatggccgagcagccacacacaagcctaagatcaccatgca

Function

NR:

description
zinc finger protein AEBP2-like isoform X2

GO: NA

KEGG:

id description
K17452 AEBP2; zinc finger protein AEBP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944578.1 False 1989 mRNA 0.53 9 52610725 52628311
XM_036944579.1 False 1971 mRNA 0.53 9 52610725 52628311
XM_021563588.2 False 1942 mRNA 0.53 8 52610726 52628307
XM_021563589.2 True 1924 mRNA 0.53 8 52610726 52628307

Neighbor

gene id symbol gene type direction distance location
LOC118938978 NA coding downstream 1425 52609171 ~ 52609300 (-)
LOC110490286 LOC106576121 coding downstream 65554 52460553 ~ 52545171 (-)
slco1c1 LOC106576120 coding downstream 173591 52376012 ~ 52437134 (-)
LOC110490281 NA coding downstream 262792 52337771 ~ 52347933 (-)
LOC118938894 cog5 coding downstream 331860 52208019 ~ 52278865 (-)
LOC110490288 LOC106609184 coding upstream 2527 52630838 ~ 52809711 (-)
LOC110490289 NA coding upstream 25063 52653374 ~ 52656938 (-)
LOC110490291 LOC106609175 coding upstream 392960 53021271 ~ 53029431 (-)
LOC110490294 utp20 coding upstream 407340 53034589 ~ 53040657 (-)
LOC118938980 NA coding upstream 409021 53037332 ~ 53037459 (-)
G1305802 NA non-coding downstream 3261 52607119 ~ 52607464 (-)
G1305655 NA non-coding downstream 12776 52597706 ~ 52597949 (-)
G1305653 NA non-coding downstream 13899 52596619 ~ 52596826 (-)
G1305595 NA non-coding downstream 54992 52555508 ~ 52555733 (-)
G1305585 NA non-coding downstream 70728 52539767 ~ 52539997 (-)
G1305821 NA non-coding upstream 2101 52630412 ~ 52672735 (-)
G1305845 NA non-coding upstream 65647 52693958 ~ 52695698 (-)
G1305873 NA non-coding upstream 113854 52742165 ~ 52742559 (-)
G1305881 NA non-coding upstream 126391 52754702 ~ 52755086 (-)
G1304988 NA other downstream 620552 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 688197 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 817371 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1404864 51199223 ~ 51205927 (-)
LOC110490244 LOC106609225 other downstream 2309718 50290050 ~ 50301082 (-)
G1306232 LOC106576137 other upstream 426538 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 1128204 53756479 ~ 53786697 (-)
G1307309 NA other upstream 1270999 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1521733 54150044 ~ 54150540 (-)

Expression


Co-expression Network