LOC110490746 (LOC106609171)


Basic Information

Item Value
gene id LOC110490746
gene name LOC106609171
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53008490 ~ 53021248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945547.1
TGGCATTCGAGTTTCGGCCACCAAAGGCTCACAGGGGGCAGAGGGTTTATTGGTGCCATTGTTAAGATCTATCGGATTCGACATCACTGATGGAGATTCATAGCATGTGGAAATTTGTATTGGACTTTTGGAATTTGGTACGCCTATTTACGTTTTTGTTGGAGGAGCAGCTCGGTAATTAACGTTACCTGAGTAAATCCCACCGGCGCCTCGAATCCGATCTCTATTCACGATCAGGTGAACAATACGTTGTATAAAGGTTATTATAAATCATATTACCATGTTTGACGGTGACCCGATGAAGAGGGGGAGTGTGAAGACCACTCATCGTGAGACGGAGGAGTTTAGGCGGACGGCGGTGAGGAGAAATTCGAAGGGAATACCGCAGGAGACAGAAGTGTCTCCTCAACCTGCCCATCTCCAGAGCCCTGGGAAGAGCCCTGTCCAGGGGCCAAGAGGAGCTCTACTCAAAGGGAAGGGATCAGGACCCTAAGGGAGGGGGCTAGCAGTCCACAGCCCAGGAAAGTGTCCTGGGACCAGGCCTAGCCATAGACCGGTGAAGGGGGTACCACCAGGGACCCAGGGCCCAAGAAAGGGACTAGGAATCCACAGCCCAGGAAAGAGCTCTATACAGGGTGGACTAGGATCTCAGTCCCCAGGGAAGGGCGCGGGATCCAGGCTGAACCAGCTGAGAAGCCCTGGAGCCAGGATAAAGAGATATAGACTGATGGCAGGATCACCCTGCAGCCTGCCTGACCTCATCCACCTTGAGGAAAACCAGTCTGTGCTCAGATCAGCTAACAGCAGCCCAACACATACCACCACTTCTATAAGCCTGGACCAGCCTAGAGACCCAGGCAGTGGGCCTACCGACAGCTCACACACAGGACTGAATGCTCACAGTCCAGACAGGGCAGAAGTAGTGGCCTGTAGGGAGGGCAGAGCGAGGGAAATCTCTCCCATAAATATGTACGGTTTGGACCTGATGTGGGACGCTGTACTGGTCAACGGCCATGTAGGAGACGGATGGAAGATGGATACAGGGCTCAACGTGGAACTTTCCCCCTCTCACAGAGCTGCGACTGGGACGGAGGAGGCCATGCTTCAGGAGAGATCTACAGAAAagaagatgaagagagggagtgaggaggtgAGGTTGCAGGACTCCACTGAACAGAAGCTGTATAAGATTGCCAACGAGCTTCTACTCACAGAGAGGGCCTATGTTGCCCGCCTTCACCTGCTAGACCAGGTGTTCTGTGCCCGGCTGACTGAGGAGGCCGGTAAAGGCTTGTTCCCTTTAGATGTGGTGAGGACCATCTTCTCCAACATCTCCTCCATCCACACCTTCCACAGCCAGTTCCTACTGCCAGACCTGGAGACACACATGGGCCAATGGTCTGTGAGCCCTCGTCTGGGTGATGTCATGCAGCAGCATGCTCCCTTCCTCAGGATGTATGCTGAGTACGTGATGAGCTTCGACCACGCCATGGAGCTGCTTAGAGCCTGGACGGAGAGGTCCGCACCATTCAGGAACCGTCATACAGGATATAGTCGGGAGGTGTGTGGTAGTCTGACCCTGCAGCACCACATGTTGGAGCCGGTCCAGAGGCTACCTCGTTATGAGATGCTGCTGAGCGACTACCTCAAGAGACTGCCTGATGACGACTCGGACCACAGCCATGCAGAGAAGTCTCTGCAGGTCATCTCCATGGCAGCAACACACTCCAACAGCACCATCCACCAATCAGAGAACCTGAAGAAGCTGCTGGAGATCTACGAGATGTTGGGGGAGGGCGACGTGATGAACCCCTCCAATGAGTTCATCAGGGAGGGATGCATCCTGATGCTGGCTGCCAGGAACTCCGCCATGGAGAGACACCTCTTCCTGTTCAACAACATGCTGCTGTGCTGCACTCCTCGGTTCAGCCTGGGGGGGCAGCGGTTCACCGTGCGGACACGGATTGACGTGGAGGGCATGACGGTGCAGCGCACCACCAACGAACACCACCCCCACACCTTCCAGGTGTCTGGCAAGGAGATGACCCTGGAGAGGACCCTGGACCTACAGGCCAGCTCTGAACAAGACGAAGAGGACTGGTTAAAGGCTTTCCAGGACACTATTGATGTTTTCCGACAGAAGAATGACACTTTTAAGTCAACTTCTAAAGAAGTAGAGGTATCTATGGAGGAGCTGGGTCGGCGTGCCCCTCGATGGATCAGGGACAATGAGGTGACCATGTGTATGAAGTGTAGAGAACCCTTCAACGCCCTCACCCGATGGAGACACCACTGCAGAGCCTGTGGCTGTGtggtgttttggaggtgttcagacaACAAAGTAACTCTGGAGTACGATGGCAACAAGGTGAACAAGGTGTGTCTAGACTGCCACTCCGCCCTGATCCTCCGGGCCaacagaggggagagggcatGGAGGGGGGGCATTCTAGAGGTTCCACACCTCACCTCCACATTTCCATCCCTGCCCTTTCCCCAGGATGTGAAGGCCTTGTCTAGGGTCCCCTTCTAAGGGACAGGTGACGAAAGGTGATGAAAATGGGATGGTGGTTAAGGACAACGCCATGGTTGGCAATGGCAAGGGGACGGTCATCAATGGCAACGAAAGTGTCACTGATAATGGTTACGGGAGTGTCGCCAATAGAAACGGGATGGCTGTCAATGACAGCGAGGCCTCTCGCTCAAACAGCCTCCGTGTTCAAACACAAGCTATCCCCCAGTCTCTGCACTTGTGTTCAGTGTTAAGGCCTTAATGAGAtgcagtgagctccaaaagtattgggatagTGACatatttgaaatgatacaatgactgatGTTAAAGTGCAGACTATCTGCTTTAATttaagggtattttcatccatatcgggtgaccTGTTTGTAAATTACAGCACGtgttgtacatagtccccccatgtTAGGGGACCCATGTATTGGGACATATTCACTTATATAGATATTAAAGTAGTGCAAAATATTTgctcccatattcctagcatgcaatggttacatcaagcttgtgactctacaaccttgttggatgcatttgctgtttgtttttcgttgtgtttcagattattttgttccAAATAGAAATGTATGGTAAATGAATATAttatgtcattttggagtcacttgtattgtaaataagaatagagtatgtttctaaacacttctacattaatgtggatgctaccatgattctGGAACTTTCTACTACTTTAATTTCACATAAGATCATTTttttcccaatacttttggtcccttaAAATGGGGAGGACTATGTACAAAACGTACTGCAATTTCTAAATgttggatgaaaataccctcaaattaaagctggcagtctgcactttaaccccatagtcattgtatcatttgaaATCCAAAGTACtcgagtacagagccaaaataaacaaaaatgtcaCTGTCCTAATACTTTTGGCGCTCTCTGTATACCGTAATGGGTTGCCAATGAGATGTATTTTGTGTAAAAACTCGATGATTGAAAGGGATTGCTTTTGATAAAAAGATCTGTCTTCACAATGAgacattttttgaaaattctAACATTTTAGTTTATGGAAAAGAGAGATTTTTCTGGAAGATGCACcttgctgccttgttgacaaaatGACAGAGCGGCGCAGATTACTGTTCCATATGAGAAGGGCGCTCCTCTCTCCCCGCTTTCGCCCAATGATGTAAGGGGCCATAGACCGGTGCCCCGCTGGCTTATAATAATAGGCTGCAACCTTTCTCTGCTGTGGCCACTGAGCCGTTGGGTCCGCCCTGCAACAACATTGGATAACGCTGGGCAGGCCTCTTGCTAGCTCTTGCTCAGATACGAaaggctgaagctcattggctagaactcaaATTGCCAGGAGGCTGGCCCACGTGGAGGGAAATGTAGGGAAGTGCAGCACAGCTTCAAGAAAAGTCGCTTTCAATCTAGGGATTTCGTAGctaattgatgtaaaaaaaaatattctcatagattatgcatgtatgaacacATTCAGCCCAAAGTGGGAGGTTTAAAAAGTACTTTCACCAAAGTACAggagcatgtctttaagtaaATATATTCCTATGGAAAACTTTTAAGTCTACACATTTTATGGAGATGGAGACCTTCCactaaatacactacatgaccaaaagtatgtggacacctgcttgttgaacatctcattccaaatcatgggtgtttaatatggagttggtcccccctttttctgctataacagcctccactcttctgggaaggctttccactagatgttggaacatttctgcgagtacttgtttccattcagctaCACGAGCATTAGTTTGGTCGGACACTGACGTTGGGCGATAAGActtggctcgcagtcagcgttccaatatatcccaaaggtgttcaatggggttgaggtcagggctctgtgcaggccagtcaagttcttccacactgatctcgacaaaccattcctGAATataccttgctttgtgcacaggggaattgtcatgctgaaaacaggaaagggccctccccaaactgttgctagaaagttggaagcacagaatcgtctagaatgtcattgtatacgtTTTTTACTTCATCAGTATCCTCAACATTATTTTTCTCCTGTTACATCACAAACATGTTACATTTCTCCTGCAGTGCCTAACTACGTTTTGTATGTGTGTAGATAAGTGGACAGAATGCAGTCTTCGCTAACGCGAGAACGTTGCTTTTCAGTCACGCTGTAACTCTGAACTTCTGCGacacggattgaatagagccccaaAAGATTTTGAGAATTTCTGACCATAATTGCAGCCATAAGTGCCATACTGAAAGCCagtgaggaggaagtggaggagctaaagagagagaatgCAGTTTCAAGTAATTTGGCCAACAACTGTTTCTCATGTGTTGATTAAAATTAAAAACTGGAGGCCATTGTGACATCCAGTGAGTGGCAACACAGGTAATCaaactttgtaaaaaaaaaaaattaaaaacatactTAAGGTAGGTTTAACAAATGTTACATTTACTAATGAGTCCTTTCCTGTAATCACAGCTTTGGAAGCCAGGCAGAGtgtcagggagagggagggaggagctgaAGAGAGAGAACGCAGGGATAACCGATACAGAAAAGGAGTATTGTTTTCCAGTCAGAAGTGCTGCACTTGTTTGTAACCCGAGAAGGtgtttatacctgctgttaacaTGCACCCTCATCTTGTCTTTTTACACTTTTAAGATCTGATCACATCACACTGCGTCATTTagaatgtgggcacaatcagaatgtggacaacgTCAGGACAAAGActgcatgttagaaccaggtattaacagggctgatccctccctcctctgatgCAGGTATCTTCACAGCACCAGTGAGAGGAGTCTACTACATCAGATTCACTGCCATGGATTACCTCACATCGCATTCATGTGTGTATATCTTTACCACAATGACAAGAGAGTTCTGTTAAATAACTAATATGGTACCCATGGAGATCTTCAGTACAGGTCTAATGCATTGACTCTAGAGCTGGAGGGGGGGGATGTGATCTACATGCGTCTCCCCTCAGGCAGGAGGCTCTTTGATAATTCTAATAACTACACCTTCAGTGGCTTCCTGCTCTTCCCTATGTGAAGGGAGTACCGTCAATTATGTAATGATTTCTGATGTGAACAGTTCGGATGAATCAATAAAGAGCATCAttttaa

Function

NR:

description
FYVE, RhoGEF and PH domain-containing protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945547.1 True 5767 mRNA 0.47 12 53008490 53021248

Neighbor

gene id symbol gene type direction distance location
LOC110490290 LOC106609170 coding upstream 49 52975612 ~ 53008441 (+)
LOC110490848 LOC106609256 coding upstream 39748 52965848 ~ 52968742 (+)
LOC110490283 dus4l coding upstream 641528 52348124 ~ 52366962 (+)
LOC110490279 LOC106576114 coding upstream 680642 52319622 ~ 52327848 (+)
LOC110490280 LOC106609195 coding upstream 800781 52204825 ~ 52207709 (+)
LOC110490293 LOC106609177 coding downstream 8388 53029636 ~ 53035717 (+)
LOC110490748 slc5a8 coding downstream 24101 53045349 ~ 53053406 (+)
cfap94 casc1 coding downstream 56447 53077695 ~ 53086160 (+)
bcat1 LOC106576140 coding downstream 93702 53114950 ~ 53141791 (+)
sox5 LOC106576150 coding downstream 331500 53352462 ~ 53471763 (+)
G1306034 NA non-coding upstream 22607 52985607 ~ 52985883 (+)
G1306030 NA non-coding upstream 28291 52979918 ~ 52980199 (+)
G1305925 NA non-coding upstream 168210 52840001 ~ 52840280 (+)
G1305666 NA non-coding upstream 301255 52609435 ~ 52707235 (+)
G1305682 NA non-coding upstream 372322 52635628 ~ 52636168 (+)
G1306076 LOC106576138 non-coding downstream 72520 53093768 ~ 53094434 (+)
G1306082 NA non-coding downstream 80933 53102181 ~ 53104864 (+)
G1306098 NA non-coding downstream 112293 53133541 ~ 53134082 (+)
G1306297 NA non-coding downstream 151375 53172623 ~ 53212242 (+)
G1306314 NA non-coding downstream 176460 53197708 ~ 53198024 (+)
G1305302 NA other upstream 495440 52512629 ~ 52513050 (+)
G1304886 NA other upstream 1093480 51914597 ~ 51915010 (+)
G1304083 NA other upstream 1355490 51584754 ~ 51653000 (+)
LOC110490271 LOC106576088 other upstream 1610528 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 other upstream 1649003 51351361 ~ 51382579 (+)
G1306708 NA other downstream 559293 53580541 ~ 53583352 (+)
LOC110490314 LOC106576157 other downstream 867980 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 2136758 55157706 ~ 55170847 (+)
G1308238 NA other downstream 2241710 55262958 ~ 55278451 (+)

Expression


Co-expression Network