LOC110490294 (utp20)


Basic Information

Item Value
gene id LOC110490294
gene name utp20
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53034589 ~ 53040657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490294
ATGACTACCCTCTTCGACGAGAAGATGTTCAAGAATGAGGGTATGACGTCAGCCTCAGTAGAGGTGATAGGAGCGGTGTGTAGGAGACGGACCTGGTCTAAATACCTCTACTATCTTAAACACTTTGTTCACATACTGCAGACTGGACAGGCTGAACAGAAACTCGCTGTCagTCTGTTGGTGACTGTTCTAGAGGCGTTCCACTTTGACCATGACACtctggagagagaaatggaggctGCTAAGACCAGGGCCAAAGAGGTTGTGAGCACCGTTGTTGATGACGAcggtgatgaggaagaggaggcggCAGCTGTCGAATCAGAGGAGAGTGACACTGAGGAAGCCATGGAAACTGAAACCGTCAACAGCGGCACGAAAACAACCACCATGGAAACGGCTCTCCTGGTCTCGGAGAGTCTGCCCCTCGTCACCAAGAGGAACGGgcatTCCCAGGCCCCCCCGGACCCTCACCTGCCCCCTCCCAGCTGTATCCTCTTGCCCCCCACCCCAAAGAGAGGGGGACTTAAAGCCCCCGTCAGCAGCCGCACCAACATGCACATCCTAGTGGACACTGGACTCCGGctGCTCCATATGAGTCTGAAGAAGTCCAAGGTCAACTCCTCTGAGGCCTCTGCTCTTGAGATGCTGGATCCCTTCTTGAAGACACACAAGATAACTGAGACGCAGCTGCAAGTGCTGCTGGGATACGCTGAGGAGGACATTTATGACCAATCACGTCAGGCGACAGCCTTCGGCCTGCTACAGGCCATCCTGTCCAGGAAGCTGGTAGTACCATCTCTGGTAGGAGCTGATGAAGACAGTGGCCAAGCTATCTGTTGCCGGGCAGAACGGCATGATCAGTGTGTCTTGTAAAAAGTTATTTGAGTGTTTCTGTTATTTTCACCAGAAGTATATCCTGGATTATCCTCTGGGGAAGAAACTGAGATCACATCTGGATTTTATCGTGGCCCAGCTCAGTTATGAGTTTGACACAGGAAGAGAGGCTTCTCTGGAGCTGATGGCCTATATCTTCCAGACCTTCCCTCAGAACCTGCTGCTGCAGCACAGTGGGTTGTTCTTCGTCCATCTGGCTCTGGCCATGGTTAACGATGACTCGGCTCGCTGTAAGAAGATGGCCGCCGTGGCTATCAAATCACTGCTGAGTCAACTGGACCAGAAACACCAGAACACTCTTTTCACCCTGGTCAACACTTGGCTGTCTGGAGACAAAATATGGACGCGTCGTCTGGGGGCCCAGGTGTGTGGGCTGTTTGTGGAGGTAGAGGGGGTTCGGTTTGGCCTCCGTTTAGATGCCCTGCTGCCCCTCATCGAGAAAGAGATCCACCCCGACAACTTTGAAGACattgaggaggaggagaaggcagCAGACAGACTGCTGTTCAGTTACCTCACCCTGGTCACCAAACTCACCAAGGACTGTAGCCTACTGGAGCTCAGCAAGCCTCAAGACCCACTCACTAACACCCTGGACCCCACCCTGAAAAACCTGTTGAAGAAGCAGGTGGGGCTGCAGACCTCTCTGGCCTTCTCAGCCGTTCAGAAGGATGCCTCACAGAGGGTGGGTGGCCCACCGCACAAAACACAAGGCTATGCAGGCGGTGGTTAACCCTGACATCGCAGCCAGGAAGAAACACAAAAAACAAGATCGAGGCCAAGAAAGAAGATTGAGTTTCTGAAGCCTGGCTACAGAGCCAAGAGACAGAGGAACTCACTCAAGGACTTGGCTATGGTGAAATTATATTATCCATTTTCTAGCAAGGATGGATGAGAAGACCAGGCAATCATATTCTGCTTAATGCAGGAGCTGACAGTCACCTCTGTATGAATTCTCCGTCAAGGATTTGAGAAGTCCAAGATTGTCTAAggggtttacacacacacacacaactttttcaatTAAATACTATATTGTGCTGCTTTCTTTGAACAATCTTATTGGAGAAGTATCAGTGGTCCTGTTGAACATTACAATAATGCTTCTTGGGTGGGAGATAAATAATTTGACCAAAGTTGTATATATTCAGTCTGAAATTCGTGTTACTGAGGGTCGTTTTCACTGTACAAGCTCAAATATGCAATAAAAGTTGTAGCATACAAATTAAGCAGTTAGTGTCCAACAACTGACATTAAAGTTTGAGCATTCCAATGAAAAGGCCTAAACTAACAACCTCAAACTTTATTTACACACCCAACAAAAGTTtaagaaatgaaaaaaaaaaaaaa
>TU1490105
TGCTGCTTTCTTTGAACAATCTTATTGGAGAAGTATCAGTGGTCCTGTTGAACATTACAATAATGCTTCTTGGGTGGGAGATAAATAATTTGACCAAAGTTGTATATATTCAGTCTGAAATTCGTGTTACTGAGGGTCGTTTTCACTGTACAAGCTCAAATATGCAATAAAAGTTGTAGCATACAAATTAAGCAGTTAGTGTCCAACAACTGACATTAAAGTTTGAGCATTCCAATGAAAAGGCCTAAACTAACAACCTCAAACTTTATTTACACACCCAACAAAAGTTtaagaaatgaaaaaaaaaaaaaatcagtatGAGTAATACAATAAAAAACAGCACCAGCTGCAGTAACGTTGCTCGGGGCCAGTCAGTTCTTTGCCCCTGAGCCAACCCCTCGGTGTTTACAGATCAGAAGGAACTGGAAGGGTTCACCAAAAATGGCAGAAGATTACATCCAATTGGAGGTCTAATGTGGAGCCATCACCACATTACTTGGTCCTCTTCAGATCTGCAAACACCACAGGGCTATGGGCGATAAGTGTTTTGGGACAAGGTAATATACTATATTGCAGTCTCTCTATCCCAGGCTGGAAGGCATGGAGGGGCTAGGCATGGTGAAGGCTTCAGGGATAGGGCGGGGCTGTGTTCAGCAGGGCACAACGTTTTGGAACCTTCatatagaaatgtattgtgtagaacCTGTGACATGTAGAGTAAGGATTCACGTCAGCTCTATTCATGACATTTCTATTTACAACATTTGAGTACTGAACGTGCCCCTGGAAGGATTGCAGTCACTGGTCCTCCTGAGCAGTCCAATCAGGAAGTATTTTATACAGGAGTTCAGGAGTATTTACAGAGAACAAGAGGTGTGGGCTGTCTTTACTGCCTGCTCTTCAGGGCTTCCACCAACCTtctgcaactggatcctggacttcctgacgggccgcccccaggtggtaagggtaggtaagaACACAgtcgccatgctgatcctcaacactggggcccctcgggtgcgtgctcagtcccctcctgtactccctgttcactcatgactgcatggccaggcacaactccaacaccattaagtttgctgatgacacaacagcggtagacctgatcaccgacaagacagcctatagagaggaggaggacctgaccatgtgatgcaaggacaacaacctctccctcaacctgatcaagacaaaggagatgatcgtgaactacaggaaaaggaggactgagcatgcccccattctcattgacgg

Function

symbol description
utp20 Predicted to be part of 90S preribosome and small-subunit processome. Predicted to be active in nucleolus. Is expressed in immature eye; myotome; nervous system; pharyngeal arch; and somite. Orthologous to human UTP20 (UTP20 small subunit processome component).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490294 False 2247 mRNA 0.49 15 53035651 53040657
TU1490105 True 1275 lncRNA 0.46 2 53034589 53035962

Neighbor

gene id symbol gene type direction distance location
LOC110490291 LOC106609175 coding downstream 6220 53021271 ~ 53029431 (-)
LOC110490288 LOC106609184 coding downstream 225940 52630838 ~ 52809711 (-)
LOC110490289 NA coding downstream 378713 52653374 ~ 52656938 (-)
LOC110490287 LOC106576122 coding downstream 407340 52610725 ~ 52628311 (-)
LOC118938978 NA coding downstream 426351 52609171 ~ 52609300 (-)
LOC110490297 LOC106576136 coding upstream 14189 53054846 ~ 53062315 (-)
LOC110490299 LOC106576137 coding upstream 20293 53060950 ~ 53062801 (-)
lrmp LOC106576138 coding upstream 44990 53085647 ~ 53109210 (-)
etnk1 LOC106609326 coding upstream 487564 53528016 ~ 53548231 (-)
aldh1l2 LOC106576152 coding upstream 514381 53555038 ~ 53576166 (-)
G1306222 LOC106609171 non-coding downstream 17755 53016633 ~ 53017896 (-)
G1306217 LOC106609171 non-coding downstream 21214 53013902 ~ 53014437 (-)
G1306216 NA non-coding downstream 21853 53012943 ~ 53013798 (-)
G1306195 NA non-coding downstream 26762 53006526 ~ 53008889 (-)
G1306198 NA non-coding downstream 56852 52978511 ~ 52978799 (-)
G1306233 NA non-coding upstream 16766 53057423 ~ 53150195 (-)
G1306242 NA non-coding upstream 34536 53075193 ~ 53142075 (-)
G1306283 NA non-coding upstream 113958 53154615 ~ 53155065 (-)
G1306547 NA non-coding upstream 196479 53237136 ~ 53237399 (-)
G1306548 NA non-coding upstream 198190 53238847 ~ 53239190 (-)
G1304988 NA other downstream 1045478 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1113123 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 1242297 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1829790 51199223 ~ 51205927 (-)
G1306232 LOC106576137 other upstream 14192 53054849 ~ 53062280 (-)
efcab6 efcab6 other upstream 715858 53756479 ~ 53786697 (-)
G1307309 NA other upstream 858653 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1109387 54150044 ~ 54150540 (-)
G1307901 NA other upstream 1726315 54766972 ~ 54768422 (-)
LOC118938980 NA coding upstream 1370 53037332 ~ 53037459 (-)

Expression


Co-expression Network