LOC110490299 (LOC106576137)


Basic Information

Item Value
gene id LOC110490299
gene name LOC106576137
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53060950 ~ 53062801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563615.2
CGACTAATAATAAAGCAAATTACTGTTTTTATAACCGAGGGTGTTTAGCCAATTACGTTACTATTAGCTggctaatcattcgctttaccaccTAGCCGTAGACTTTGTACTGTTACCTAACCTACCTGCTAAGTGAACAAAGTGGTGAAGGCTGATTCTGTCTCAGGCAGTGACATGGCCAACCCtctgaggagagaggttagaCAGCTGTACAAGAATCTACTGTATCTGGGACGGGAATACCCCCAAGGAGCAGACTACTTCAGGGAGCGTCTGAACAGTGCCTTTGTGAAGAACAAATATGTCACAGACCCCAAGGAGATCAGAAAGCTTGTTGATTGTGGAGAGGATGTGATTAAGGAACTGGGGACCCTGTACTATCTGAAGGAATATAGCGCCATGAAAAAGCGTTTCTACGAAGAAGAATTGTTAGGCCTGCTGAATATAGGCAGACCGACAGACTGATAGCCTAGATGTTTGGCAGCTGAATCTTCAGTATGCGGGtggaccagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaattaaaaaaaatagagAACATTTTGGGTAGTGTAACTTGGTCCCCCAAAAATATtgttttcacctcattttaacattctgtcataaagtgCACATGTCCAACTTTCTAAAAACATTTGTTTCCATGTCAAGGGCTTAAATAAAACTAATGACTAGTAAGTGCCATTAAAGAACAGGGTTGATGTAA
>XM_021563614.2
GGATCCCTTCTAGCCGTGACTCTGGAATCGACGCGCTGTTTGACGTAATCCTTCCATGTAGCCAGTTTTCAGCAAGACAGATAGCGTTCAGCACAGCACTGCGAGGATTTTATCGATAAGGGAGCCTAGCGATAATTGGTGAAGGCTGATTCTGTCTCAGGCAGTGACATGGCCAACCCtctgaggagagaggttagaCAGCTGTACAAGAATCTACTGTATCTGGGACGGGAATACCCCCAAGGAGCAGACTACTTCAGGGAGCGTCTGAACAGTGCCTTTGTGAAGAACAAATATGTCACAGACCCCAAGGAGATCAGAAAGCTTGTTGATTGTGGAGAGGATGTGATTAAGGAACTGGGGACCCTGTACTATCTGAAGGAATATAGCGCCATGAAAAAGCGTTTCTACGAAGAAGAATTGTTAGGCCTGCTGAATATAGGCAGACCGACAGACTGATAGCCTAGATGTTTGGCAGCTGAATCTTCAGTATGCGGGtggaccagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaattaaaaaaaatagagAACATTTTGGGTAGTGTAACTTGGTCCCCCAAAAATATtgttttcacctcattttaacattctgtcataaagtgCACATGTCCAACTTTCTAAAAACATTTGTTTCCATGTCAAGGGCTTAAATAAAACTAATGACTAGTAAGTGCCATTAAAGAACAGGGTTGATGTAA
>XM_021563613.2
TCCTCTACAGTCGGTTAATTTAGCCTTACCACTCAAACGTTCCCATGGTGAAGGCTGATTCTGTCTCAGGCAGTGACATGGCCAACCCtctgaggagagaggttagaCAGCTGTACAAGAATCTACTGTATCTGGGACGGGAATACCCCCAAGGAGCAGACTACTTCAGGGAGCGTCTGAACAGTGCCTTTGTGAAGAACAAATATGTCACAGACCCCAAGGAGATCAGAAAGCTTGTTGATTGTGGAGAGGATGTGATTAAGGAACTGGGGACCCTGTACTATCTGAAGGAATATAGCGCCATGAAAAAGCGTTTCTACGAAGAAGAATTGTTAGGCCTGCTGAATATAGGCAGACCGACAGACTGATAGCCTAGATGTTTGGCAGCTGAATCTTCAGTATGCGGGtggaccagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaattaaaaaaaatagagAACATTTTGGGTAGTGTAACTTGGTCCCCCAAAAATATtgttttcacctcattttaacattctgtcataaagtgCACATGTCCAACTTTCTAAAAACATTTGTTTCCATGTCAAGGGCTTAAATAAAACTAATGACTAGTAAGTGCCATTAAAGAACAGGGTTGATGTAA

Function

NR:

description
electron transfer flavoprotein regulatory factor 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563615.2 False 849 mRNA 0.42 3 53060950 53062146
XM_021563614.2 False 843 mRNA 0.44 3 53060950 53062316
XM_021563613.2 True 752 mRNA 0.43 3 53060950 53062801

Neighbor

gene id symbol gene type direction distance location
LOC110490294 utp20 coding downstream 20293 53034589 ~ 53040657 (-)
LOC118938980 NA coding downstream 23491 53037332 ~ 53037459 (-)
LOC110490291 LOC106609175 coding downstream 31519 53021271 ~ 53029431 (-)
LOC110490288 LOC106609184 coding downstream 251239 52630838 ~ 52809711 (-)
LOC110490289 NA coding downstream 404012 52653374 ~ 52656938 (-)
lrmp LOC106576138 coding upstream 22846 53085647 ~ 53109210 (-)
etnk1 LOC106609326 coding upstream 465420 53528016 ~ 53548231 (-)
aldh1l2 LOC106576152 coding upstream 492237 53555038 ~ 53576166 (-)
LOC110490308 LOC106576153 coding upstream 516038 53578839 ~ 53584339 (-)
efcab6 efcab6 coding upstream 693678 53756479 ~ 53786697 (-)
G1306222 LOC106609171 non-coding downstream 43054 53016633 ~ 53017896 (-)
G1306217 LOC106609171 non-coding downstream 46513 53013902 ~ 53014437 (-)
G1306216 NA non-coding downstream 47152 53012943 ~ 53013798 (-)
G1306195 NA non-coding downstream 52061 53006526 ~ 53008889 (-)
G1306242 NA non-coding upstream 12392 53075193 ~ 53142075 (-)
G1306283 NA non-coding upstream 91814 53154615 ~ 53155065 (-)
G1306547 NA non-coding upstream 174335 53237136 ~ 53237399 (-)
G1306548 NA non-coding upstream 176046 53238847 ~ 53239190 (-)
G1306552 NA non-coding upstream 185390 53248191 ~ 53248700 (-)
G1304988 NA other downstream 1070777 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1138422 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 1267596 51785488 ~ 51793354 (-)
LOC110490264 LOC106576080 other downstream 1855089 51199223 ~ 51205927 (-)
G1307309 NA other upstream 836509 53899310 ~ 53922128 (-)
G1307473 NA other upstream 1087243 54150044 ~ 54150540 (-)
G1307901 NA other upstream 1704171 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 2085974 55148760 ~ 55155353 (-)

Expression


Co-expression Network