sox5 (LOC106576150)


Basic Information

Item Value
gene id sox5
gene name LOC106576150
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53352462 ~ 53471763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001164068.1
ATGCTCACAGACCCTGAGCTACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAATCTCTCCATATGGGGGGACAGATGGAGAAGTAGTCATGGCAACCAGCAGACAGAGactggaagaggaagagagagatgatggaCAGGCTGTCATGCACCTCCCCCTGACCCCCTACTGCAGCAAggtgtcccccctctctccccgccCCCTGGACAGCCCCCCCACCCTGCACAGTGCCATGgaccAGGATGGCAGTAAGCATTGGTCTCTGAGCCCCTACCCCCAGCACAACTCCTCTACCTCTCCAGGCAGTAAGCagcaggtggaggaggggggttcAGGGGCCGCAGCGCTGGGGACCCCAGAGAGGCGTAAGGGCAGCCTGGCTGACGTGGTGGACACACTGAAACAGAGGAAGATGGAGGAGCTCATCAAAAACGAACCAGAACAGGTCCCAGGTCAGGACCCTTACCCTCTCCagctggtacctactaccatggCAGCAGCTGCTGCCGCGGCAACGCCAGGCCTCGGTCAACTACAGCTCCAGCAGCTGTATGCAGCTCAGCTGGCAGCGATGCAGGTGTCTCCAGGGGCCAAACACAGCAGTATGTCCCAGACCAACCTGAACACCCactctcccaccaacacacaccatgAGAAGAGCCGCAGCACCCCGCCGCCCAAACCCAAGGACGAGGGTGCTCAGCCCCTGAACCTGTCGTCCAAGCCTAAGACAGCAAGCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCCACCATGAAGCTGGGCCACCATAGCACCGGGTCCATGAAACACAGCACAGCCCCCTCCAGCGTCGGAGGACCACCATCCAGAGTCAGCTCCATAGacctgctgtcatccctgtcctcggGGGGCTATCTGAACGACCACGAGGCTGTGACCAAGGCCTTCGCTGAGGCCAGACAGATGAAGGAGCAGCTGAAGAGAGAACAGCAGGTGTTGGATGCCAAGGTGGCCGCCGTCAACAACCTCAGCCTGAACAACGGACGCTCCGACAAGgaCAAGGCAGCTCTGGAGAGTCTGAGCCACCAGCTGAAGCAGCagtcagaggacagagagaagttCAACCACGCCATGATGGACTTCACCATGAGTGGAGActcagatggCAGCCCCAGTGTttctgattccaggatgttccgTGAGGCCCGGGGCCGAGGCAACAGCGAACCACACATTAAACGACCCATGAATGCTTTCATGGTCTGGGCaaaggatgagaggaggaagatTCTCCAGGCTTTCCCCGACATGCACAACTCCAACATCAGCAAAATCCTCGgttcTCGTTGGAAGTCCATGACTAACCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCCCGGCTGAGCAAGCAGCACCTGGAGAAGTACCCGGACTACAAGTACAAACCCCGGCCCAAACGGACCTGTCTGGTGGACGGGAAGAAGCTGAGGATTGGAGAGTACAAGGCCATTATGAGGAACCGCCGGCAGGAGATGAGACAGTACTTCACTGTGGGACAACAGGCCCAGCTGCCCTTGTCCTCGGCGGGCGTGGTGTACCAAGGTGCCCTTTCCTTGGCAGGCTTGCCCTCCCCCCAGATGCCCTCGGAGCACTCCTCACTGTCCAGCAGCCCCGAGCACGCCGCCCCACCCCTCCAGACCCCCTACCACCCCAGCCTCAAGGGAGACGAGACCCGAGTCAAACAGGAGGAGCTGCGATTGGACGACAGCAATGGTGATGCGTACGACGACTTTGATTATGAGGACGAGGAGGGAGATTATGGAAGCGATAACGACAACCACCAATAA
>TU1490279
gccGTGCTCTGTGCTGGCCCTTTAAGAGCTGAGCCCAGATCTAACAGCTTACAGGGCAGGGAGGgtaggaggagggacagagacagagggagggagggtgtgaggctgagtgtgtgtgagcgctacagagagagagagagagagagagagaacagtctccgTTGTCTCAGAGGTTGAAGGATCAATAGAGAGGCTTGTTGTGGCGGTTGTGATTCTGTTCCATCTGTGTGTCGGAGCTGCATGGTGTTAGAAGGAGGAATCCTAGTTCCCACAGACCTATTCCAGCATGCTCACAGACCCTGAGCTACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAATCTCTCCATATGGGGGGACAGATGGAGAAGTAGTCATGGCAACCAGCAGACAGAGactggaagaggaagagagagatgatggaCAGGCTGTCATGCACCTCCCCCTGACCCCCTACTGCAGCAAggtgtcccccct
>TU1490277
tctccgTTGTCTCAGAGGTTGAAGGATCAATAGAGAGGCTTGTTGTGGCGGTTGTGATTCTGTTCCATCTGTGTGTCGGAGCTGCATGGTGTTAGAAGGAGGAATCCTAGTTCCCACAGACCTATTCCAGCATGCTCACAGACCCTGAGCTACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAATCTCTCCATATGGGGGGACAGATGGAGAAGTAGTCATGGCAACCAGCAGACAGAGactggaagaggaagagagagatgatggaCAGGCTGTCATGCACCTCCCCCTGACCCCCTACTGCAGCAAggtgtcccccctctctccccgccCCCTGGACAGCCCCCCCACCCTGCACAGTGCCATGgaccAGGATGGCAGTAAGCATTGGTCTCTGAGCCCCTACCCCCAGCACAACTCCTCTACCTCTCCAGGCAGTAAGCagcaggtggaggaggggggttcAGGGGCCGCAGCGCTGGGGACCCCAGAGAGGCGTAAGGGCAGCCTGGCTGACGTGGTGGACACACTGAAACAGAGGAAGATGGAGGAGCTCATCAAAAACGAACCAGAAG
>TU1490278
tctccgTTGTCTCAGAGGTTGAAGGATCAATAGAGAGGCTTGTTGTGGCGGTTGTGATTCTGTTCCATCTGTGTGTCGGAGCTGCATGGTGTTAGAAGGAGGAATCCTAGTTCCCACAGACCTATTCCAGCATGCTCACAGACCCTGAGCTACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAATCTCTCCATATGGGGGGACAGATGGAGAAGTAGTCATGGCAACCAGCAGACAGAGactggaagaggaagagagagatgatggaCAGGCTGTCATGCACCTCCCCCTGACCCCCTACTGCAGCAAggtgtcccccct

Function

NR:

description
PREDICTED: transcription factor SOX-5-like isoform X10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001164068.1 False 1845 mRNA 0.59 12 53352748 53471763
TU1490279 False 480 lncRNA 0.54 2 53352462 53367345
TU1490277 False 579 TUCP 0.57 3 53352617 53375412
TU1490278 True 325 lncRNA 0.53 2 53352617 53367345

Neighbor

gene id symbol gene type direction distance location
bcat1 LOC106576140 coding upstream 210957 53114950 ~ 53141791 (+)
cfap94 casc1 coding upstream 266588 53077695 ~ 53086160 (+)
LOC110490748 slc5a8 coding upstream 299342 53045349 ~ 53053406 (+)
LOC110490293 LOC106609177 coding upstream 317031 53029636 ~ 53035717 (+)
LOC110490746 LOC106609171 coding upstream 331500 53008490 ~ 53021248 (+)
c15h12orf45 LOC106609327 coding downstream 80435 53552198 ~ 53554958 (+)
scube1 LOC106576154 coding downstream 113296 53585059 ~ 53728823 (+)
trnak-cuu-7 NA coding downstream 228533 53700296 ~ 53700368 (+)
mpped1 LOC106576156 coding downstream 234705 53706468 ~ 53755855 (+)
LOC110490313 LOC106576157 coding downstream 356375 53828138 ~ 53859559 (+)
G1306411 NA non-coding upstream 21012 53331156 ~ 53331736 (+)
G1306390 NA non-coding upstream 47875 53304663 ~ 53304873 (+)
G1306389 NA non-coding upstream 48466 53303917 ~ 53304282 (+)
G1306386 NA non-coding upstream 54440 53298085 ~ 53298308 (+)
G1306385 NA non-coding upstream 55382 53296993 ~ 53297366 (+)
G1306708 NA non-coding downstream 110785 53580541 ~ 53583352 (+)
G1306723 NA non-coding downstream 117971 53589734 ~ 53629404 (+)
G1306755 NA non-coding downstream 203546 53675309 ~ 53710289 (+)
G1305302 NA other upstream 839698 52512629 ~ 52513050 (+)
G1304886 NA other upstream 1437738 51914597 ~ 51915010 (+)
G1304083 NA other upstream 1699748 51584754 ~ 51653000 (+)
LOC110490271 LOC106576088 other upstream 1954786 51386269 ~ 51404401 (+)
atxn7l1 LOC106576087 other upstream 1993261 51351361 ~ 51382579 (+)
LOC110490314 LOC106576157 other downstream 417465 53875911 ~ 53890829 (+)
LOC110490339 LOC106576184 other downstream 1686243 55157706 ~ 55170847 (+)
G1308238 NA other downstream 1791195 55262958 ~ 55278451 (+)
G1308299 LOC106576208 other downstream 1876273 55348036 ~ 55349205 (+)

Expression


Co-expression Network