aldh1l2 (LOC106576152)


Basic Information

Item Value
gene id aldh1l2
gene name LOC106576152
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53555038 ~ 53576166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944604.1
ATAAGCTGGCTGTGGCTGGCTCGAACCACTGTCATTCcgaggcaggtgtgtgtgtcatCAGGTGCTTCCACACGTCCCCAGACCACGTTGGACTAATTCTGTCGTATTTTAATTTGTGTAAATTAATACAGCCATCATGTTGTGGACAGTGAACCGAATCATTAGGAAATTCTCTACCAGCTCTaattaTTACCAAAATAAGCTGAGACTGGCTCTGATTGGCCAGAGCCTGTTTGGACAGGAGGTGTACACCAACCTACGGAAGCAGGGCCATAAGGTGGTGGGCGTGTTCACTGTGCCAGATAGGGATGGCAAGGCAGACCCTCTGGCGGTAGTGGCGGAGAAGGACGGGACGCCGGTCTTTAAGTTCCCGCGGTGGCGTGTCAAAGGGAAGCCCATCACGGAAGTGGTGGAGGCCTACAAGGCGGTGGGGGCTGAGCTCAACGTCATGCCCTTCTGCTCCCAGTTCATCCCCATGAACGTGATCGACCACCCGGCCCACGGTTCCATCATCTACCACCCCTCCATCCTGCCCCTGCACCGCGGGGCCTCCGCCATCAACtgGACTCTGATCCAGGGAGATAAGAAGGCTGGGTTCTCCATATTCTGGGCTGATGATGGTCTGGACACAGGTCCCATCCTGCTCCAGAGAGAGTGTTCTGTGGAACCCAACGACACGGTGGACTCCCTCTACAATCGCTTCCTCTTTCCAGAGGGCATCAAGGCCATGGTGGAGTCCGTGCAGCTGATCGCTGATGGGAAAGCTACGCGCGTCCCCCAGACAGAGGAGGGGGCCAGCTACGAGGGTATCCAGAAGAAGTCCAACTCCAAGgtcAACCTCGCTCAGCCGGCAGAGGCTATCCACAACTGGATCCGTGGCCACGACAAAGTCCCCGGGGCGTGGACGGTCATTGATGGTCAGacTGTGACTCTGTACGGGTCGTCCATGCTGGGGGAGTCGGTGGCAGCCGGTCAGCCCCTGGAGATAGAGGGGGCGTCCCAAGCTGGTGTCGTCACCAAGAACGGCCTGGTTCTGTACGGGTCAGATAGCAAAGCGCTGATGGTGAAGAACCTGCAGTTTGAGGATGGGAAGATGATCTCTGCTGCTAAGTACTTCTCTTCAGGAGACACCGCCCGCGTGGAGCTGACTGATGACGAGAAGAAGATAGCAGAGGAGATACGAGACATCTGGAAAGGCATTCTGAGCAACGTTGCTGCCATTGAGGAAACCACAGACTTCTTCAAGTCAGGAGCTGCTTCTATGGACGTGGTCAGGCTGGTGGAGGAGATCAAGCAGAGGTGTGTAGGGTTGCAGCTGCAGAATGAGGACGTGTACATGGCCACCACCTTCCAGGACTTCATCCAGATGTTTGTGAGAAGGCTGAGGGGGGAGGACCAGGAGGAGGAGATGGTCATCGACTATGCAACTAAAGACGTCAACAACATGACGGTGAAGATGCCTTGGCAGTGTTTCATCAATGGCAAGTTTGAGGACGCAGAGAACGGCAAGACCGCCAATACCATAAACCCTGCCGATGGCTCTGTGATCTGTAAGGTAGCCTATGCGTCAGTGGGAGATGTGGACCGGGCGGTAGCAGCAGCCAAAGAGGCCTTTGAGGTTGGCCCCTGGGGCAGGATGAACCCTAGAGATCGTGGCACCCTGCTGTACAAGCTGGCTGACCTGATGGAGGAGCACCAGGAGGAGTTGGCCACCATAGAGTCCATAGACTCTGGAGCTGTCTACACCCTGGCCCTGAAGACCCACATAGGCATGTCCATCCAGACCTTCCGCTACTTTGCCGGCTGGTGCGACAAGATCCAGGGCAAGACGATACCCATCAACCAGGCCAGGCCCAATCGCAATCTGACTTTCACCAAGAAGGAACCTCTGGGTGTGTGTGCCATCGTCATTCCCTGGAACTACCCACTCATGATGCTGGCATGGAAGAGTGCCGCTTGCCTCGCTGCTGGAAACACACTGGTCCTGAAACCTGCacagGTAACTCCTCTGTCAGCCCTGAAGTTTGCTGAGCTGACTGTGAAGGCTGGCATTCCCAAGGGAGTCATCAACATCGTACCTGGCTCAGGTGGGATGGTGGGACAGCGCATGTCTGACCACCCTGACATCCGTAAACTGGGCTTCACAGGCTCCACCCCAATCGGCAAACAGATCATGAAAAGCTGTGCGCTGAGTAACCTGAAGAAGGTTTCtctggagctgggagggaagTCTCCACTCATCATCTTCAGCGACTGTGACATGGACAAGGCTGTGcgcatgGGTATGAGTTCTGTGTTCTTCAACAAAGGAGAGAACTGCATCGCTGCTGGACGCCTGTTCGTGGAGGAGTCCATACATGACGAGTACATCAGGAGAGTGGTGGAGGAGATAAAGAAAATGAAGGTGGGTGATCCTCTGCACCGCTCCACGGACCACGGGCCCCAGAACCACAAGGCCCACATGGACAAGCTAGTGGAGTACTGTGAGGTGGGCGTGAAGGAGGGTGCCACGCTGGTGTACGGGGGCAAACAGGTGGACAGGCCAGGGTTCTTCATGCAGCCCACACTGTTCACAGACGTGGAGGATCACATGTTCATCGCCAAAGAGGAATCCTTTGGTCCCATCATGGTGGTGTCCAAGTTCAAAGACGGTGACATAGATGGCGTGCTAAGCAGAGCCAACGACACCGAGTTCGGCTTGGCGTCCGGCGTGTTCACGCGTGACATCAACAAGGCCATGTACGTGAGCGAGAGGCTGGACGCCGGGACTGTGTTCGTCAATACTTACAACAAGACCGACGTGGCCTCGCCGTTCGGCGGTTTCAAACAGTCCGGCTTCGGCAAAGACCTTGGAGAGGATGCTCTTAACGAATACCTCAGGACCAAAGCAGTGACTGTGGAGTACTAAGGCAGCCAGCCACTCCTAATAAACTGTAACAACGACTGATCAATCAATCCACCTGATCACGACTCACCAGTCAGTCTCAATCAGGAGTCCAGCCTTGGCTTTGCTAACagcaggtgtgtgagagaggagacCTTTGATGGGTCGCTTACCCTCTGCCACGACCTCGTCTCAAGGTGCCTACAGTTTTGAGCATTCTGATCAGGAACTTGCATTACGGACATATCAGGCGGTTTCCCCCACAGTTACAAAAGGGGAATGCACATATCAAACGCAGTGATGGATTTCAGTATTCCGGAGCCAAGGTGGATTTGACTGGATCAACCCTCCTTTACTTTGGAGTTAAGTTTTCGGTTCCTCCACTCATCATGAAAGAACATTTTGCTTTACAAAAGCCGAGCGCTTCAGGCAATCTCCTCCTGCTCTGTCAGTCACAGGTTTCATTTTAGCTCAAGCATGCAGGTTCAGATTTGTAGGTCATTTCTGCTCAGCAATGTTAGGTGCCACACTTCTGAAGATATCCACAAGTCCCTTAGTTAAATTGTAATTTGTAAATATTTTATAACAAAAGAAAAACACTGAATAATTGGATATTTTTGACATTGTATTTCTGTCAGAAAAGGAGCACTGTAGGTTACAACACTAGATAATGCACACCAACCTACCTGcctgttttggtaaaaaactgagggatggggctggagaaatctAACTACTCTCAAATGTATAGACAgatctatggatgcaaggactgactatCCATATTATagttaaccatgttgaggctatatagtttactttgtttacaaaaaaagtaaacaagcttatatttggggttaGGCAGATGAACTAAGCTTATTAAGCATTTAAGGtatattcaagaatcaatgggtacatatcaatTTAAGTCCAACAGTAAATTAACAAACTACAGACTGCCCCTTTAAGTTTAGTAAATAATATATTAATTTAAACAAGTATTAAATAAACGACCTTAGAAAGACTTGTTGATATACAAATACAACGGCTAACACTAAGAACGTATACGTTCAAGATGATCATATTTTCATTGTATGTGCCATTTTAATGAGCATTTTGAAAACTGCAGGGAAATCTGGTCTCTATGGAGATGTGGGAGACTCTTCTCCTCCAAACCTTATGCAAAAACCAGCCCCAATACAGCATTGTTTGTCTTCCAACAAATGTTGTACAACGGTGAATAAACTCCTTGATTTCTTTCTTCA

Function

NR:

description
mitochondrial 10-formyltetrahydrofolate dehydrogenase-like

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00289 ALDH1L; formyltetrahydrofolate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944604.1 True 4149 mRNA 0.51 23 53555038 53576166

Neighbor

gene id symbol gene type direction distance location
etnk1 LOC106609326 coding downstream 6807 53528016 ~ 53548231 (-)
lrmp LOC106576138 coding downstream 445828 53085647 ~ 53109210 (-)
LOC110490299 LOC106576137 coding downstream 492237 53060950 ~ 53062801 (-)
LOC110490297 LOC106576136 coding downstream 492723 53054846 ~ 53062315 (-)
LOC110490294 utp20 coding downstream 514381 53034589 ~ 53040657 (-)
LOC110490308 LOC106576153 coding upstream 2673 53578839 ~ 53584339 (-)
efcab6 efcab6 coding upstream 180313 53756479 ~ 53786697 (-)
sult4a1 LOC106576158 coding upstream 212512 53788678 ~ 53817042 (-)
LOC110490327 LOC106609305 coding upstream 715991 54292157 ~ 54302557 (-)
LOC110490750 LOC106576170 coding upstream 728842 54305008 ~ 54371525 (-)
G1306631 NA non-coding downstream 112043 53442454 ~ 53442995 (-)
G1306564 NA non-coding downstream 284902 53269687 ~ 53270136 (-)
G1306554 NA non-coding downstream 299316 53255498 ~ 53255722 (-)
G1306552 NA non-coding downstream 306338 53248191 ~ 53248700 (-)
G1307199 NA non-coding upstream 51467 53627633 ~ 53672203 (-)
G1307204 NA non-coding upstream 67738 53643904 ~ 53644780 (-)
G1307250 NA non-coding upstream 169105 53745271 ~ 53842233 (-)
G1307315 NA non-coding upstream 280124 53856290 ~ 53891901 (-)
G1307316 NA non-coding upstream 316137 53892303 ~ 53892980 (-)
G1306232 LOC106576137 other downstream 492758 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 745425 52630838 ~ 52809711 (-)
G1304988 NA other downstream 1564865 51989711 ~ 51990173 (-)
G1304896 LOC107662719 other downstream 1632510 51921495 ~ 51922528 (-)
LOC110490744 LOC106576129 other downstream 1761684 51785488 ~ 51793354 (-)
G1307309 NA other upstream 323144 53899310 ~ 53922128 (-)
G1307473 NA other upstream 573878 54150044 ~ 54150540 (-)
G1307901 NA other upstream 1190806 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 1572609 55148760 ~ 55155353 (-)

Expression


Co-expression Network