Item | Value |
---|---|
gene id | LOC110490313 |
gene name | LOC106576157 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048579.1 |
NCBI id | CM023233.2 |
chromosome length | 81569517 |
location | 53828138 ~ 53859559 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021563626.2 | False | 4977 | mRNA | 0.43 | 9 | 53828138 | 53859559 |
XM_021563627.2 | False | 4858 | mRNA | 0.44 | 10 | 53828155 | 53859559 |
XM_036944616.1 | False | 4803 | mRNA | 0.44 | 10 | 53828161 | 53859559 |
TU1490733 | True | 2496 | lncRNA | 0.39 | 2 | 53852125 | 53859551 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
mpped1 | LOC106576156 | coding | upstream | 72283 | 53706468 ~ 53755855 (+) |
scube1 | LOC106576154 | coding | upstream | 99315 | 53585059 ~ 53728823 (+) |
trnak-cuu-7 | NA | coding | upstream | 127770 | 53700296 ~ 53700368 (+) |
c15h12orf45 | LOC106609327 | coding | upstream | 273180 | 53552198 ~ 53554958 (+) |
sox5 | LOC106576150 | coding | upstream | 356375 | 53352462 ~ 53471763 (+) |
LOC110490314 | LOC106576157 | coding | downstream | 16352 | 53875911 ~ 53890829 (+) |
ttll12 | ttll12 | coding | downstream | 50089 | 53909648 ~ 53959246 (+) |
LOC110490318 | LOC106576161 | coding | downstream | 80606 | 53940165 ~ 53981489 (+) |
LOC110490319 | LOC106576161 | coding | downstream | 129372 | 53988931 ~ 54066265 (+) |
LOC110490320 | LOC106576164 | coding | downstream | 207365 | 54066924 ~ 54075391 (+) |
G1306755 | NA | non-coding | upstream | 117849 | 53675309 ~ 53710289 (+) |
G1306723 | NA | non-coding | upstream | 198734 | 53589734 ~ 53629404 (+) |
G1306708 | NA | non-coding | upstream | 244786 | 53580541 ~ 53583352 (+) |
G1306852 | NA | non-coding | downstream | 70246 | 53929805 ~ 53930980 (+) |
G1306844 | NA | non-coding | downstream | 215958 | 54075517 ~ 54077861 (+) |
G1306899 | NA | non-coding | downstream | 233163 | 54092722 ~ 54140427 (+) |
LOC118938924 | NA | non-coding | downstream | 236412 | 54095971 ~ 54096529 (+) |
G1306920 | NA | non-coding | downstream | 294067 | 54153626 ~ 54153855 (+) |
G1305302 | NA | other | upstream | 1315088 | 52512629 ~ 52513050 (+) |
G1304886 | NA | other | upstream | 1913128 | 51914597 ~ 51915010 (+) |
G1304083 | NA | other | upstream | 2175138 | 51584754 ~ 51653000 (+) |
LOC110490339 | LOC106576184 | other | downstream | 1298447 | 55157706 ~ 55170847 (+) |
G1308238 | NA | other | downstream | 1403399 | 55262958 ~ 55278451 (+) |
G1308299 | LOC106576208 | other | downstream | 1488477 | 55348036 ~ 55349205 (+) |
LOC110490357 | LOC106609270 | other | downstream | 1710459 | 55569924 ~ 55583925 (+) |