Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110490319 |
| gene name | LOC106576161 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 53988931 ~ 54066265 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| DENN domain-containing protein 5B-like isoform X10 |
| id | description |
|---|---|
| K20164 | DENND5; DENN domain-containing protein 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036944633.1 | False | 2796 | mRNA | 0.57 | 12 | 53988931 | 54055596 |
| XM_021563632.2 | False | 7167 | mRNA | 0.51 | 23 | 53988931 | 54066265 |
| XM_021563633.2 | False | 7164 | mRNA | 0.51 | 23 | 53988931 | 54066265 |
| XM_021563635.2 | False | 7125 | mRNA | 0.51 | 22 | 53988931 | 54066265 |
| XM_021563636.2 | False | 7107 | mRNA | 0.51 | 22 | 53988931 | 54066265 |
| XM_021563637.2 | False | 7056 | mRNA | 0.51 | 22 | 53988931 | 54066265 |
| XM_021563638.2 | False | 7053 | mRNA | 0.51 | 22 | 53988931 | 54066265 |
| XM_021563639.2 | False | 7014 | mRNA | 0.51 | 21 | 53988931 | 54066265 |
| XM_021563640.2 | False | 7011 | mRNA | 0.51 | 21 | 53988931 | 54066265 |
| XM_021563641.2 | False | 6954 | mRNA | 0.51 | 20 | 53988931 | 54066265 |
| XM_021563642.2 | True | 6951 | mRNA | 0.51 | 20 | 53988931 | 54066265 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490318 | LOC106576161 | coding | upstream | 7442 | 53940165 ~ 53981489 (+) |
| ttll12 | ttll12 | coding | upstream | 29685 | 53909648 ~ 53959246 (+) |
| LOC110490314 | LOC106576157 | coding | upstream | 98102 | 53875911 ~ 53890829 (+) |
| LOC110490313 | LOC106576157 | coding | upstream | 129372 | 53828138 ~ 53859559 (+) |
| mpped1 | LOC106576156 | coding | upstream | 233076 | 53706468 ~ 53755855 (+) |
| LOC110490320 | LOC106576164 | coding | downstream | 659 | 54066924 ~ 54075391 (+) |
| LOC110490321 | LOC106576165 | coding | downstream | 15520 | 54081785 ~ 54089932 (+) |
| LOC118938924 | NA | coding | downstream | 29712 | 54095971 ~ 54096529 (+) |
| LOC110490322 | LOC106576166 | coding | downstream | 38117 | 54104382 ~ 54117420 (+) |
| LOC110490323 | LOC106576167 | coding | downstream | 79273 | 54145538 ~ 54256366 (+) |
| G1306852 | NA | non-coding | upstream | 57951 | 53929805 ~ 53930980 (+) |
| G1306755 | NA | non-coding | upstream | 278642 | 53675309 ~ 53710289 (+) |
| scube1 | LOC106576154 | non-coding | upstream | 283494 | 53585059 ~ 53728823 (+) |
| G1306723 | NA | non-coding | upstream | 359527 | 53589734 ~ 53629404 (+) |
| G1306844 | NA | non-coding | downstream | 9252 | 54075517 ~ 54077861 (+) |
| G1306899 | NA | non-coding | downstream | 26457 | 54092722 ~ 54140427 (+) |
| G1306920 | NA | non-coding | downstream | 87361 | 54153626 ~ 54153855 (+) |
| G1306927 | NA | non-coding | downstream | 120534 | 54186799 ~ 54187064 (+) |
| G1306708 | NA | other | upstream | 405579 | 53580541 ~ 53583352 (+) |
| sox5 | LOC106576150 | other | upstream | 613519 | 53352462 ~ 53471763 (+) |
| G1305302 | NA | other | upstream | 1475881 | 52512629 ~ 52513050 (+) |
| G1304886 | NA | other | upstream | 2073921 | 51914597 ~ 51915010 (+) |
| LOC110490339 | LOC106576184 | other | downstream | 1091741 | 55157706 ~ 55170847 (+) |
| G1308238 | NA | other | downstream | 1196693 | 55262958 ~ 55278451 (+) |
| G1308299 | LOC106576208 | other | downstream | 1281771 | 55348036 ~ 55349205 (+) |
| LOC110490357 | LOC106609270 | other | downstream | 1503753 | 55569924 ~ 55583925 (+) |
| G1309147 | NA | other | downstream | 1950183 | 56016448 ~ 56016948 (+) |
