LOC110490323 (LOC106576167)


Basic Information

Item Value
gene id LOC110490323
gene name LOC106576167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54145538 ~ 54256366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944636.1
AGTCCCCGCAGCCCACAGTAGGCAAGACAgtcactgcctgtctgtctagcgGAACGGATATGGCTCCCTACTCACCCCGGCTTTTTCCCAGACCCAAGCGGCTTGTTGCCAGGCGAGGGCCGACATGACAGTACACGGTCGAGAGAAGACCCCTGGCCCGCTCCGCCTGTCGGTCCCGTTAGAAGCAGGGAGAGGAGCAGGTCGATATGCGGTGCTGCTGGTCCTGTGCGCGCTGTGCTACAGCAACTCTCTGCACGGGGAGTTCGTGCACGACGATGTGTGGGCTATCAGCAATAACCCCGACGTCCGGCCCGGGTCCAGCCTGCAGAACATCTTCACCAACGACTTTTGGGGCAAGAGGATGGCGGATAACACGAGCCACAAGTCCTACAGACCGTTATGCATCCTCACCTTCAAattGAACATCCTCTTGGGTGGAATGACCCCTCTCTACTTCCATGTGGTTAACGTGTGTCTTCACTGTGCCGTGACCTGTCTGCTCATGCACACGTGTGATCGTTGCGTGTTCGACGACCCCCGTCTGGCCTTCCTCACCGCCCTCCTCTTCGCTGTGCACCCCATACACACTGAGGCTGTGTCTGGTATCGTGGGCAGGGCGGATGTCTTGGCCTGCATGCTGTTCCTCCTGGCCTTTCTCTCCTATGTTAGgagtgtgggtgtgtgtggttcTGGTTCTGCAGACTCTCTGCCCTCCACAGTGTCTGTGTGGGCGCTGGGTGCCAGCCTGCTGCTGGGCACCTGTGCTATGCTGGTCAAGGAGACGGGCATCACCGTCTTCGGGGTGTGTGTGCTCTACGATGCCCTGGTGCTCTGCCGCAAGCCCCTCCTCTTGCACCTCTCCGGCTCTAAGATGAAGGATCTTCTCAGAATCTCCGTCCCCTTCCTCAAACGAGCCTGTGCCGTCTCTCTCTATGTGGCGGTCATCATGTCCTTCAGGCTGTGGCTGATGGGTGGCTCCATGCCTCTCTTCTCTGAGCAGGACAACCCagcctccttctctcctcacctgCTCACCAGGTTCCTGACCTACTGCTACCTGTTGGCGTTCAACGCGTGGCTGCTGCTGTCTCCCGCGGTGCTGTGTTATGACTGGCAGGTGGGCAGTATACCCCTGGTGGAGTCACTGTGGGACATGCGCAACGTCGCCGCCCTGCTGCTGGGAGTGGTCATGGTCGCCCTCTGTCTGCACTGTGTCATGTCGCTACAGaggtTGGAGAATAGGGAGGTGTTGCTGGGGGTGTTGTTCCTGGTCTTTCCCTTCATCCCTGCCAGTAACCTCTTCTTCAGGGTGGGCTTCGTGGTGGCAGAGAGGGTCCTCTACATGCCcagtaTGGGTTACTGTATCCTGGTGGCCCATGGCCTGGGCAGGTTGTGTTCTGTGGTGGGTCGCTGGGGCACCACGGCCCTGACCGTCTCCACgctgctgctcctcctgctcttcTCCTGGAAGACCGTTCAGCAGAACGACATCTGGCTGTCCCGGGAGGCCCTCTTCAGgTCTGGCATCCAGACGCTGCCTCACAACGCCAAGGTTCACTACAACTACGCCAACTTCCTGAAAGACAGAGGGCGCCACCAGGAGGCCATCCACCACTACAAAACTGCTCTCAGGTTGTACCCTCGCCATGCCAGTGCCATGAACAACCTGGGTACTCTGACACGCCACCCAGAGGATGCCGAGCACTACTACAGGACCGCCCTGGACACCAACCCCCAGCACAACAGAGCCCTGTTCAACCTGGGAAACCTGCTCAAGTCCCAAGGGAAGAAGGAAGAGGCGGAGGCTCTGTTGAGAGACTCCATTCGGTTCGGTCCACACTTCGCTGACGCCTATTCCAGTCTAGCATCACTTTATGCAGAGCAGAAGCGGTTTGCGGAGGCCAATGAAGTTTATTTGCAAGGCATAGAGAGCTGCCCAGACAGCTCAGACCTGCATAATAACTACGGAGTGTTTCTGGTCGATACCGGAGAAGGCGCGCTGGCGGCAGCCCACTACCAGCATGCCGTGCGTCTCAAGCCGGCGCACTACGTCGCCATGGTAAACTTGGGCCGCCTCCTTCGCTCCTCCAATGAGAACAAGGAGGCGGAGTCTTGGTACAAAAAGGCCCTGCAGGTGACGAGGAAGGTGGACATCCTGACGCCACTAGGGGCGCTGTACTACAACACAGGACGCTATGAGGAGGCTCTGCAGGTGTACCGCGAAGCGGCTACGCTTCAGCCAGACAGCACCGATATCTGGCTGGCTCTGGCACAAGTGTTAGCCATGGCAGGCCGCTCTAAAGAAGCAGAGAAGATGACTCTGGGCATCATATCTAAGCAGGGGAGCTGCATCGAGTGTTACCGCCTACTGTCTGCCATCTACAGCAAACGAGGCAACTACacagagGCTCTGGATGCTCTAGACAAGGCCCTACTGCAGAACCCTATAGACATGTCTGTCAGGGCAGAGCTTCACTTCTCCAAGGGCAACCAGCTCAGAGAGATGAACCAGCTGGACAGAGCCTTTGAGAGCTACAAGCTGGTAGTGGAACTAAAACCTGACCAATCGCAGGCTTGGATGAACATGGGAGGAATTCAGCATATCAAGGGAGACTATGCAGCAGCCAGGCAGTACTACCAGAGGGCCCTGATCCTAACCCCTGGCTCCAAGCTGCTGAAGGAGAACCTGGCCAAGCTGGACCGGCTAGAGAGGAGGCTGACCGGGACCTAGACTAACCCAGAGACACAGCACTATCCTGGGCATGAGTTGGAGTCCAAGGACCCTGGAACCCCAACAGTACTGACCTGGTTCTTAAATCAACCTACCTGGTTGATGATGTGAGATTATGGTGAACATGACAGGGTTGCAGGGTATGGAAGCAGACTGGGGGTGATGGAGCTTCCAGGGGAGCATGAGGCTGGTTAAGCCTGTGATTGGACTCACATTATGTTGGAAGCAGATGGAGAGAGGACCCtaaggagtggagatggagattCAGCCAGCAGCACTTCAAGCTGGAGCGGACTGGATCAGATCTCTGGAACTCTTTAAAACAGTACCACGAGCTCCACACATCGCCCAGCCTGAAAAAGCTTCAAACAAACTGAtctgctttttaaaatgttttgtttcGTTTTATTTGTTTTCCTATTTCATTTCATGTTAAATCCTGTTTTAGGCTCTAAATCTGTGATCACTACCCTCATCTCTGCTTATGAGCAAAGCCATAAGTAAACCCATGTTGAGATTTTGAATTGGGTGTCATGTTCACATTAAAAGCTCCAACAATATCGTTCTAGCTGGAAGACAAATGACATTTTGCCAACATGAAGGATAGTTTGCTGAAGTCACTGTATATCCATGTTTAGGTTTGGGCTTGCCTTGACTCAAACGTGGCCCCAGCAAACCCTTAGCATGAGCTTGTCTGGGATACATAAGCTCTGTGATAAGACTATTAGACCAGGTATCAGTGTGCTCTGTGAGCACATTGACAACATGTGCTTTTAACCTCAAGCTATGGCAGAGCCTCTGAGAAGCAAGCAACGCTCAATGTAGCCTTCCATAAGTACAAGTAAGCTAGTGTCTGTAGACTCCTCCTAAGGCCTAACACTGACCCTCTGATCCGCTCAACATTTCTGACGCTGTGTATTATTTGTTGCTGTTGATGTTGCTATGATGATTGTGAATGAATATTTTATGTGGAATGTACAAATAGGATAAAGATGAACTGACTAGTGCAATgactgagattgatttgcaccatAAAAATAAATCTATGTTTTATTAACTGGTG

Function

NR:

description
transmembrane and TPR repeat-containing protein 1

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944636.1 True 3794 mRNA 0.54 19 54145538 54256366

Neighbor

gene id symbol gene type direction distance location
LOC110490322 LOC106576166 coding upstream 28118 54104382 ~ 54117420 (+)
LOC118938924 NA coding upstream 49009 54095971 ~ 54096529 (+)
LOC110490321 LOC106576165 coding upstream 55606 54081785 ~ 54089932 (+)
LOC110490320 LOC106576164 coding upstream 70147 54066924 ~ 54075391 (+)
LOC110490319 LOC106576161 coding upstream 79273 53988931 ~ 54066265 (+)
LOC110490324 LOC106576203 coding downstream 138 54256504 ~ 54263798 (+)
LOC110490325 LOC106576169 coding downstream 10964 54267330 ~ 54281787 (+)
LOC110490330 LOC106576173 coding downstream 127269 54383635 ~ 54399850 (+)
LOC118938814 NA coding downstream 760755 55016905 ~ 55018391 (+)
LOC118938895 NA coding downstream 767160 55023526 ~ 55030917 (+)
G1306899 NA non-coding upstream 5111 54092722 ~ 54140427 (+)
G1306844 NA non-coding upstream 67677 54075517 ~ 54077861 (+)
G1306852 NA non-coding upstream 214558 53929805 ~ 53930980 (+)
LOC110490313 LOC106576157 non-coding upstream 285987 53828138 ~ 53859559 (+)
G1306951 NA non-coding downstream 9873 54266239 ~ 54266464 (+)
G1306957 NA non-coding downstream 33570 54289936 ~ 54290184 (+)
G1306959 NA non-coding downstream 35490 54291856 ~ 54292177 (+)
G1306960 LOC106576171 non-coding downstream 36763 54293129 ~ 54294539 (+)
G1306965 LOC106609305 non-coding downstream 45374 54301740 ~ 54301962 (+)
LOC110490314 LOC106576157 other upstream 255147 53875911 ~ 53890829 (+)
G1306708 NA other upstream 562186 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 770126 53352462 ~ 53471763 (+)
G1305302 NA other upstream 1632488 52512629 ~ 52513050 (+)
G1304886 NA other upstream 2230528 51914597 ~ 51915010 (+)
LOC110490339 LOC106576184 other downstream 901640 55157706 ~ 55170847 (+)
G1308238 NA other downstream 1006592 55262958 ~ 55278451 (+)
G1308299 LOC106576208 other downstream 1091670 55348036 ~ 55349205 (+)
LOC110490357 LOC106609270 other downstream 1313652 55569924 ~ 55583925 (+)
G1309147 NA other downstream 1760082 56016448 ~ 56016948 (+)

Expression


Co-expression Network