LOC110490327 (LOC106609305)


Basic Information

Item Value
gene id LOC110490327
gene name LOC106609305
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54292157 ~ 54302557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944637.1
ATCCGAGCCTGGGAGCGCGCTTTTCAGAGACGCTCTGTGTGGGTTCTCCCAGTCCAGGATAAAACTGTTTGTCTGCGTTTTGGGGAACACCGTCGGGAACTTATTTTATCACCCATCCAACTGTAGGCTACTAGCCGCAGAGCCACATGATTAtaatcaccatctctctctccccgtggATGTTTTTTTTACTGAATTGCTCGAGATTACCACGGATTGAGGATTATTTCTGTTAGGGTCCTATGCTGTGGGGCTAGCATGAGACAGAGCCCAGCACCGATCCAGCGCTCCATGGACATACCCTTCCCCAGTGCCCGGGAGGCCAGTCATCTTCTGTAAATGAGGTGGCCATGGAGAGAAGAAGCGGCTGTGGAGTACATCAGATCTGCTTTCTGTTTCTCTTACTGTTTTCACTGTATCCTGTCTGCTGTCGAGCCAGTTGGATGTGGTTGGGAATAACCTCCGTGGGAGTACCAGAGAAGCTGGGCTGCGCCAATCTCCCGCTGACGCACAAGCAGAAGGACCTGTGCAAGAGAAAGCCCCATCTCCTGCCAAGCATCAAGGACGGCGCGCGCATCGGCATCGCGGAGTGCCAGACGCAGTTCGAGCACGAGCGTTGGAACTGTTCTACAGCCAAAGAGCTCTCTGTGTTCGGCTACGAGCTAACCAGTGGGACCAAGGAGACGGCGTTTATCCACGCGGTGATGGCGGCTGGGCTGGTCCAGGCAGTGACGCGCTCCTGCAGTGCGGGCAATATGACAGAGTGCGGCTGTGACACCAGCCTGCAGGGCACAGGCTCGCCCAGCGAAGGGTGGCACTGGGGCGGCTGCTCAGACCATATCCAGTACGGTACATGGTTCAGCAGGAAGTTCATAGATAATTCAGTGAAGAATATGTCCTCAGCCAGGGGAGGGGATGCACTGCTCACCATGAACCAGCACAACAGTGAAGCCGGGAGACAGGCTGTCGCCAAGACGATGGCCACCGACTGCCGTTGCCACGGCGTGTCGGGCTCGTGTGCCGTCAAGACGTGCTGGCGCACCATGGCATCGTTCGAGCGCGTGGGCAACTTCCTGAAGGAGCGCTATGAGGGAAGCGTTCAGGTGCTGGACCGTTCCAAGAGGAaggtgaggaggaaggagaaggaccAGCGTCACGTGCCCATCGGGAAGGAAGAACTTATCTTCCTCAACAAGTCTCCTAACTACTGTCTGGAGGACCGGCGCTGGGGCGTGGCGGGCACTAGAGGGCGCCGGTGTAACCGCACCTCGGCCGGCCCCGACGGGTGTAACCTGCTCTGCTGCGGTCGAGGGTATAATACACACGTGGTTCGCCACGTAGAGAGGTGCGAGTGTAAGTTTGTGTGGTGTTGCTATGTGAGGTGTCAGAAGTGTGAGAGCATGAATGACATGCACACGTGTAAAtagggagggggaggcaggtgatggcacacacaaacacactcacactgtcCCCAATGAGAGACTAAAAGACTCCCCCCACCATTCCTCTCTCCCATGGACAGGGAAGACGGTATTTATACACCACACCATCAGAGGTGGACAAAGACAGTGGAAAATAGTTGACTTTGATTGGCCTATCAGGGCCCAGCCTTGTAGGAGGCAATCCAATGGGACAGGAGTTCCACAGTGTTTCAGAGGCTTGAGGATCCACACACTCTGACTACCAAACATGGCCATCTTCATGATTTACTCAAGAGTAGAAATGAGCCACAAAACTCAATGATATAAACAAACCGAACTTTGATGAAAGTTAAAACCTCACTCTTCAAGTCTTCAAATGGACTCGGTGAATGATGTGTAAGAGGAGAACAAAGGGACCAAAAAGTGCCTGTAGGGGGGCGGCAACCCAGTCCTGCTAGGCCGCAACAGTGTCATTACATTTCCAGAACAGAACGAAGTCTCATATAGACAACTGCAGGCTAGAGCTATAGGCAGTACAGGGATTGGGAAACCGTCAGAGGTTGCCAACTTTTGTGTCATTTCTGGGGCTCTCTTACAGGCTAGGGAGTAAGGACAGACCCATGGCTTTATGGTGATTGATGGTGGATAGGTTAGACTTATTCTTGTTGGAAAGCTTGCAGTATCAATGCATAGAAATAAGTCTTGAAATAATCATTCAAATGCTTTGTATTTTTGGAATAAACTGCTGATGACTTCAAAAATAGATGGTACCATGACATTTTTATTTGAGATATTTTGGAAAGGTTTCTTGAAATCTACAATATTAGTTTTTTTTACTATTCAGATTGCACAAGTCAGGGCAGGGTAAAGCGCCGGGGGCTTTGACTGAGAATATGTCAGATGACGTAATATGTTTTGTAAATGGTTTACATTTTGTAAATATTAAAGGATGCTGCGTCACACGATGAGTGTCTTAAGATTCAAGCCCATCCAATGCTCTCAGACATACAGCATGTGTTTGTCAAGCTGTACCACTTAATGTGTTGCTTTTCTGTTTGCCATCATTGTATTACCAAGGTCCTTTGTTATCCTTTTGCTGTCCGATCAACTTTTTCTCTATCCCGTGTTTGTGTTTGGATCCGAAACCAGCTATAAATGAAGGAATGCCTCAATGGAACGGAGCAGTTTGTTCTCAGTAGACCCACTGGCAGCAGGACCGTGGAGATGCTTGAGTTGGTTTCGGAGCATTCCTCTTGCTGTCTCTAAGAATTTAAGCCTAttccgtctcttcctctctctcctttcgttTCCCCTCTCAGTCTCTTCCCAGTTTCAGTCTCTCTATTCCTTtacctctgtctacctctctctctctcgctttcattctccctctcttgttctctctctctctctcctgactgagAGGCTGTGCTATGTGAGAAGTGACGATGCTATGCTAAATACCGCGAGTGCTTTCTCTTAAAGAGCCTTTAAAAGTCTAACGATACTGACCCTTAAATTTCCCTGAAGCGTCCAGCACTATGACTTgttggtgagaggagagggggggaaacCCAGACCTAAAGGAAGTGGGACGAGATGGAGGAGAGCAGTTGACGTGAGCCCGAAGCGCTCTGACCTCGAGGCTTTTCAGTCATGTTTTTGTTTTGAGGACTGCTTTCAGGAATCAGGTGCTCCAGTTACAAAATAAATGGAGGATTACGTCTTACAACTCGCTGTCCTTTTTCAGTTAAATTAGTCCATAAAGTGA
>TU1491677
CTGCTCTGCTGCGGTCGAGGGTATAATACACACGTGGTTCGCCACGTAGAGAGGTGCGAGTGTAAGTTTGTGTGGTGTTGCTATGTGAGGTGTCAGAAGTGTGAGAGCATGAATGACATGCACACGTGTAAAtagggagggggaggcaggtgatggcacacacaaacacactcacactgtcCCCAATGAGAGACTAAAAGACTCCCCCCACCATTCCTCTCTCCCATGGACAGGGAAGACGGTATTTATACACCACACCATCAGAGGTGGACAAAGACAGTGGAAAATAGTTGACTTTGATTGGCCTATCAGGGCCCAGCCTTGTAGGAGGCAATCCAATGGGACAGGAGTTCCACAGTGTTTCAGAGGCTTGAGGATCCACACACTCTGACTACCAAACATGGCCATCTTCATGATTTACTCAAGAGTAGAAATGAGCCACAAAACTCAATGATATAAACAAACCGAACTTTGATGAAAGTTAAAACCTCACTCTTCAAGTCTTCAAATGGACTCGGTGAATGATGTGTAAGAGGAGAACAAAGGGACC
>TU1491678
TGGCACTGGGGCGGCTGCTCAGACCATATCCAGTACGGTACATGGTTCAGCAGGAAGTTCATAGATAATTCAGTGAAGAATATGTCCTCAGCCAGGGGAGGGGATGCACTGCTCACCATGAACCAGCACAACAGTGAAGCCGGGAGACAGG

Function

NR:

description
protein Wnt-16-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944637.1 False 3195 mRNA 0.50 4 54292157 54302557
TU1491677 False 550 lncRNA 0.47 1 54293510 54294059
TU1491678 True 151 lncRNA 0.54 1 54298640 54298790

Neighbor

gene id symbol gene type direction distance location
sult4a1 LOC106576158 coding downstream 475115 53788678 ~ 53817042 (-)
efcab6 efcab6 coding downstream 505460 53756479 ~ 53786697 (-)
LOC110490308 LOC106576153 coding downstream 707818 53578839 ~ 53584339 (-)
aldh1l2 LOC106576152 coding downstream 715991 53555038 ~ 53576166 (-)
etnk1 LOC106609326 coding downstream 743926 53528016 ~ 53548231 (-)
LOC110490750 LOC106576170 coding upstream 2451 54305008 ~ 54371525 (-)
LOC110490329 LOC106609303 coding upstream 72068 54374625 ~ 54380846 (-)
LOC110490332 LOC106609300 coding upstream 108746 54411303 ~ 54419096 (-)
LOC110490331 LOC106576204 coding upstream 295069 54597626 ~ 54599878 (-)
LOC110490751 LOC106609299 coding upstream 577083 54879640 ~ 54964148 (-)
G1307531 LOC106576203 non-coding downstream 30563 54261082 ~ 54261594 (-)
G1307494 NA non-coding downstream 54443 54189976 ~ 54237714 (-)
G1307493 NA non-coding downstream 102260 54189428 ~ 54189897 (-)
G1307474 NA non-coding downstream 139515 54152406 ~ 54152642 (-)
G1307472 NA non-coding downstream 142487 54149373 ~ 54149670 (-)
G1307599 NA non-coding upstream 96726 54399283 ~ 54400080 (-)
G1307593 NA non-coding upstream 102801 54405358 ~ 54406680 (-)
G1307626 NA non-coding upstream 204494 54507051 ~ 54515880 (-)
G1307625 NA non-coding upstream 211251 54513808 ~ 54518006 (-)
G1307473 NA other downstream 141617 54150044 ~ 54150540 (-)
G1307309 NA other downstream 370029 53899310 ~ 53922128 (-)
G1306232 LOC106576137 other downstream 1229877 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 1482544 52630838 ~ 52809711 (-)
G1307901 NA other upstream 464415 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 846218 55148760 ~ 55155353 (-)
LOC110490757 LOC106576193 other upstream 1115766 55417169 ~ 55438953 (-)
G1308831 NA other upstream 1253675 55556232 ~ 55556574 (-)
G1308906 NA other upstream 1443728 55746285 ~ 55747753 (-)

Expression


Co-expression Network