LOC110490329 (LOC106609303)


Basic Information

Item Value
gene id LOC110490329
gene name LOC106609303
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54374625 ~ 54380846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563654.2
ACGTTCTACTGACGTCACTTTCTCTGACCTCAGTTTGTCAGTGGTATTTTTTCTTCGGGACACAGCGGTTTGCGGCGCCATATTGAAAGACACAAATTATTTTCATAAACGCCTAAAATATCTAATTTGCCAAGATGTTGTACCTAGAGGATTACCTCGAGATGATCGAGCAGCTACCCATGGATCTCCGCGACAGGTTTACGGAAATGAGAGAGATGGACCTGCAAGTTCAGAATGCCATGGACCAGTTGGAGCAGAGGGTGAATGAGTTCTTTGTCAATGCAAAGAAGAACAAGCCAGAGTGGAGGGAAGAGCAGATGGGAGTCATCAAAAAGGATTATTATAAAGCATTGGAGGATGCAGATGAGAAAGTACAGCTGGCCAATCAGATTTATGATCTGGTGGACCGTCACCTGAGGAAGCTGGACCAGGAGCTTGCTAAGTTCAAGATGGAGCTGGAGGCTGACAATGCTGGCATCACTGAGATTCTGGAGAGACGATCCCTAGAGATGGACAGCCCCTCTCAGCCTGTCAATAACCACCACGTCCACTCACACACCACCGTGGAGAagaggaaGTACACCACGCAGCCGAGCCACCACACTACAGAGCACGTCCCAGAGAAGAAGTTCAAATCTGAAGCCCTGCTCTCCACACTTACGTCAGACGCCTCCAAGGAGAACACACCGGGCTGTCGCACCAACAGCACGACGTCAGCCTCTAACAACGTGTACAGTGTGAACTCGTCCCAGCCCCTGGCCTCCTACAACCTCAGCTCTCTGCCTGCTGGGCCTGGGGCTGGGGCAGGGGCCATCACCATGGCTGCAGCGCAGGCTGTACAGGCCACCGCACAGATGAAGGAGGGCAGGAGGACTAGCAGTCTAAAGGCCAGCTACGAGGCCATTAAGAACAATGACTTCCAGCTGGGGAGGGAGTTCTCCCTGACCTCCCGGGATACCACGGGGGCCTACTCCACCTCCGCACTGGCCAACACCCTCACCCAGACCCTCACCCCAGCCGGCTCAGCCATCGCCTCCGACTCCCGCGGCGGACGCAAGACCAAGGGCAACACCAAGTCTTCCAACCACCAgtcgtcgtcctcctcttcttcttcatccctGTCGTCATGCTCCTCTTCTTCAGCCCTCGCCCAGGAGCTGTCGCAGCAGGTCTCGGCCCTCCCAGAGTCTGAGACcaacaaccaggtggactggacctACGACCCCAACGAGCCCCGCTACTGCATCtgcaaccagGTGTCTTATGGAGAAATGGTGGGCTGTGATAATCAAGACtgCCCCATCGAGTGGTTCCACTACGGCTGCGTGGGCCTAACAGAAGCCCCCAAGGGGAAGTGGTACTGCCCCCAGTGTACTACTGCCATGAAGAGGAGAGGCAGCAGGCACAAATAGACACCCCACCTCTACTACCCTGCTCCTCATCCAGGACCACCCCTATCCCATTCCACACCCTTACCCCGCAAAACCAACTGTCAATGCTATATCAACTAGTTCCTCCCAAAcaagtgtgtgtacctgttgtggccacacacacagtattcttattcacctgcctgtctgtgtaaCCTCTCAGGGGTCAAAACAGTGGGGTCAAAGGTTGTCATTGCAGGGTCAGTCTCCTGCGGGAATATTTGGATGAGACACCTGACTGGAAAATCAAAACGAGCCAAGACTTCCTGAAACCGCACACCCTGGTTGGGTGTCCATTGTCCCCCTCCTGAATGTTGAGCCTCGGTgcaccccttctctcccccattcATCAGACATTCCTCGCCTTTCCCCTTGTGACAGGAAGGGCCCCCCCCTTCCTGCTTCTAAGCACGGCTGCAACAAGAAGTGCTCATTACAGTAAAATTACACAGACTGGGAAATGTACTCCATGGGTGTTTATTGGACTACAAAACCCAACCCCTCTACAAGTTTTAATTTGAATTGTAAACGAATTGATGAAACGCAACTATGACTTTGAAAATATGAGGGTGATGATTGGGACGGTGGTCATTTCAGGTAAAGTATGGATGAATATGAGTGACCCTCCACCGTTGAGTCCTGTAAAGCTGAAGAGTTCGGAATGTACAGTGTAAGATCAGTCAACTGAAGCGTGTATGTCTGAGTGTACATTTTtctgtatgtgcgtgtgtatgtgtctagTCATTCTGTACTGAGATGGTGTGTAAAAGTTTCCAGAGATGTAGAAAGAAAAAAATCCAATAAAGTGATCAAGTTCTTTTGGTA

Function

NR:

description
inhibitor of growth protein 3 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11319 ING3; inhibitor of growth protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563654.2 True 2255 mRNA 0.52 11 54374625 54380846

Neighbor

gene id symbol gene type direction distance location
LOC110490750 LOC106576170 coding downstream 3100 54305008 ~ 54371525 (-)
LOC110490327 LOC106609305 coding downstream 72068 54292157 ~ 54302557 (-)
sult4a1 LOC106576158 coding downstream 557583 53788678 ~ 53817042 (-)
efcab6 efcab6 coding downstream 587928 53756479 ~ 53786697 (-)
LOC110490308 LOC106576153 coding downstream 790286 53578839 ~ 53584339 (-)
LOC110490332 LOC106609300 coding upstream 30457 54411303 ~ 54419096 (-)
LOC110490331 LOC106576204 coding upstream 216780 54597626 ~ 54599878 (-)
LOC110490751 LOC106609299 coding upstream 498794 54879640 ~ 54964148 (-)
LOC110490333 LOC106576174 coding upstream 588597 54969443 ~ 55017031 (-)
LOC110490752 LOC106609295 coding upstream 659155 55040001 ~ 55053870 (-)
G1307531 LOC106576203 non-coding downstream 113031 54261082 ~ 54261594 (-)
G1307494 NA non-coding downstream 136911 54189976 ~ 54237714 (-)
G1307493 NA non-coding downstream 184728 54189428 ~ 54189897 (-)
G1307474 NA non-coding downstream 221983 54152406 ~ 54152642 (-)
G1307599 NA non-coding upstream 18437 54399283 ~ 54400080 (-)
G1307593 NA non-coding upstream 24512 54405358 ~ 54406680 (-)
G1307626 NA non-coding upstream 126205 54507051 ~ 54515880 (-)
G1307625 NA non-coding upstream 132962 54513808 ~ 54518006 (-)
G1307473 NA other downstream 224085 54150044 ~ 54150540 (-)
G1307309 NA other downstream 452497 53899310 ~ 53922128 (-)
G1306232 LOC106576137 other downstream 1312345 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 1565012 52630838 ~ 52809711 (-)
G1307901 NA other upstream 386126 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 767929 55148760 ~ 55155353 (-)
LOC110490757 LOC106576193 other upstream 1037477 55417169 ~ 55438953 (-)
G1308831 NA other upstream 1175386 55556232 ~ 55556574 (-)
G1308906 NA other upstream 1365439 55746285 ~ 55747753 (-)

Expression


Co-expression Network