LOC110490332 (LOC106609300)


Basic Information

Item Value
gene id LOC110490332
gene name LOC106609300
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54411303 ~ 54419096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944642.1
acagataTGGAGACATGGTTCCTAAAACCATTGTAGGGAAGATCGTTGGTTCTGTCTGTTCCCTGAGCGGTGTGTTGGTCATCGCTCTGCCCGTGCCCGTCATCGTGTCCAACTTCAGCCGCATTTACCACCAGAGCCAGCGGGCAGACAAGAGACGCGCCCAAAAGGCATCAAAGGCAGCAGGCCAGGCGCTGGTGTGCAAAGCCAACCCCATGTTCGATACGCACCACAATCACCTATTGCACTGCCTGGAAAAGACCACGaATCATGAGTTTGTGGATGAGCAAACGTTTGAGACCAGCCTACTGGAGGTTTCCATGGCGAAGCACCcgcatctctccccctccctctcctctggcTCCTCCTCCCAAGGCCTGTCGTGCTGCTCGCGACGCAACAAGAGGAAGAGCTTCAACGTGCCCAACTCCAACATGACTGGAGGGCATAGGAACAGCATCCAGGAGCTTAGCACCATCCACATCAGAGAGAGACCCATCACTAACAGtCGCTCCAGTCTAAACGCTAAGTTTGAGGAGACGGTGCCTCTGAACTGCAAGCAACCCTACATCACGGCGGCCGTCATCACGCTGCCTATGCCGCCCGTCACCACGCCCGAGGACGACGACTCCGCCTCCTCCCCAGACTACTCCCAGGCCAACATCGTCAGGGTGTCTGCCCTCTAGGCCCCTTGCCCCACCCACAACCATCACCATCATGGTAGTCCtaaaacggagagagagagagaaagagatagatagagaagCGAGACCCTTCCCAGCTCCAATCAGAGAAGGGCGTTTGCAGGAGGGAAAGGGGTAAGGGGAGGTGTGGTGGTTTAGTGGGCTGCAGGACACTTTTTGTTTTCCTACACGGAGCTACTACACGTCTGCTCTTGTGGTGAAATCACATTGCAGTGTAAAGCTGCAGCACAAAGCCCCGCCTTGGATTTGTTGGTGGGGGAGAGACTGTGTTGCCGTGGCGACTGAGATTAGCGCCTAGCAACGGACACACAAATGGAGAGCATTTAGCCACCTGGCTAACTAACTAACTGCAGCTACTCCTTCCAAACACTCTTCAAGAGAGAACTTACCATTACTAATTTTTCTATATTGTGTGTCTTTAAATGTGATGTCTTAAAACTGGAATGGGGGAGGTggaatttgttttgttttttattgtTCGTTAAGGCAGTGATTTTGACTAGAGGAGATGTATATTTGTATGTTCTGAAATGTGTGGAGTaggagagaaaagaaaaagaCATTTAAAATATTTTGACAAAAAGGAGAGCAAGGGGTGTATGCACTGTGTACATATGTTCCTACCTTATCAGAACCAGAATGTCTGGACAAGTCACCAAAATGTCCTGACAAGGTAGGAAAACAAGAAAATGTTTGAAAAGTCAGGACGGAATTTGTTAAAATCCAATTTTAagcttaagggttaggtttatggtttgggttaggtttggggttaagtttaaggttaggagttaaggtttagggttagaggtttgggcttaaggttaaggttaggttaagggcAGAGTatgtgagtggagtggagtggaggagtggcCAATTTGACTGAAGCTCATCATCCTTCTCGCCCGCTTCGATTTCGCTCCAGTAGCGCTCACTTCATGAGCTCAGGGCATGCCCGGGCAAGCATGCATTTTTATTTAAGCCCCTTACTTTaactactgtcatggagttcgttcaatattttcttaaagaaactgataaaacacacaggtgcaaaatcaaggtgacttacaaagatgaggaccaagagcaagagagggagtgtggtgatgtaactaAAGAATccttgtggaatctgaaaagagaCATATCTCgaaagcatgatggtgtacttaTTACGGGCACATGCTAAAAGAAAGGAACGAGGTGGGTGCTAATtaaagtgtgtcattgtagcaaagtatttatcAACTAAAAATCAGATCTCTTAAAAGTTTACTTCATTTTTGCTCTATTATCTATACAACACAATTGATTTGTCCCAATAGGCCTGGCATATTCCAACTTTCAAGGAGCTTTCTGTTTTGATTGGCATTTTTCattgaatttgtatttaattctaagtaaGTCACAGCCGATATGCACAATTTATAGACTATGatttaatacaacaaaatattGTTTAAATGCTGAGAGCTTAATGTCCCTGACTCCCTACCAGCCTAGTGTGTAGCACTCGCtaatgcttcacaatgtatttctttgtaagctatagccttgaaataattgaaataatataGCATAAGTAATTCATTTCCATTCCTTCTTAGGCTCCatgtctggctcctgacctatttagaaTATGTACCAGTGTTGTAGTACTCGGGTCTCGAGTTCATCGGTCTTGGATACATTTGTACTCGGCCTTGACTTGTTCTAGGACAGTGAGGACTCATAATTTCTTTCTGAGACCAGCGCAATAAAAAAACTCATAattatcagcttccattcagtcagcacATAAAACCGCTTCAccaggccaaatatatacactcCTTTCTGGAAACACTAAGACAGTGTGTTAACAGTCTTTATAtctattatagacatgtttctgcagtggtgaacctatagatcttcagtgtgtgacaggttagtacagtggtgaacctataggtcttcagtgtgacaggttagtacagtggtgaacct
>TU1491725
TACTACACGTCTGCTCTTGTGGTGAAATCACATTGCAGTGTAAAGCTGCAGCACAAAGCCCCGCCTTGGATTTGTTGGTGGGGGAGAGACTGTGTTGCCGTGGCGACTGAGATTAGCGCCTAGCAACGGACACACAAATGGAGAGCATTTAGCCACCTGGCTAACTAACTAACTGCAGCTACTCCTTCCAAACACTCTTCAAGAGAGAACTTACCATTACTAATTTTTCTATATTGTGTGTCTTTAAATGTGATGTCTTAAAACTGGAATGGGGGAGGTggaatttgttttgttttttattgtTCGTTAAGGCAGTGATTTTGACTAGAGGAGATGTATATTTGTATGTTCTGAAATGTGTGGAGTaggagagaaaagaaaaagaCATTTAAAATATTTTGACAAAAAGGAGAGCAAGGGGTGTATGCACTGTGTACATATGTTCCTACCTTATCAGAACCAGAATGTCTGGACAAGTCACCAAAATGTCCTGACAAGGTAGGAAAACAAGAAAATGTTTGAAAAGTCAGGACGGAATTTGTTAAAATCCAATTTTAagcttaagggttaggtttatggtttgggttaggtttggggttaagtttaaggttaggagttaaggtttagggttagaggtttgggcttaaggttaaggttaggttaagggcAGAGTatgtgagtggagtggagtggaggagtggcCAATTTGACTGAAGCTCATCATCCTTCTCGCCCGCTTCGATTTCGCTCCAGTAGCGCTCACTTCATGAGCTCAGGGCATGCCCGGGCAAGCATGCATTTTTATTTAAGCCCCTTACTTTaactactgtcatggagttcgttcaatattttcttaaagaaactgataaaacacacaggtgcaaaatcaaggtgacttacaaagatgaggaccaagagcaagagagggagtgtggtgatgtaactaAAGAATccttgtggaatctgaaaagagaCATATCTCgaaagcatgatggtgtacttaTTACGGGCACATGCTAAAAGAAAGGAACGAGGTGGGTGCTAATtaaagtgtgtcattgtagcaaagtatttatcAACTAAAAATCAGATCTCTTAAAAGTTTACTTCATTTTTGCTCTATTATCTATACAACACAATTGATTTGTCCCAATAGGCCTGGCATATTCCAACTTTCAAGGAGCTTTCTGTTTTGATTGGCATTTTTCattgaatttgtatttaattctaagtaaGTCACAGCCGATATGCACAATTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944642.1 False 2696 mRNA 0.45 4 54411303 54419096
TU1491725 True 1261 lncRNA 0.40 1 54411862 54413122

Neighbor

gene id symbol gene type direction distance location
LOC110490329 LOC106609303 coding downstream 30457 54374625 ~ 54380846 (-)
LOC110490750 LOC106576170 coding downstream 39778 54305008 ~ 54371525 (-)
LOC110490327 LOC106609305 coding downstream 108746 54292157 ~ 54302557 (-)
sult4a1 LOC106576158 coding downstream 594261 53788678 ~ 53817042 (-)
efcab6 efcab6 coding downstream 624606 53756479 ~ 53786697 (-)
LOC110490331 LOC106576204 coding upstream 178530 54597626 ~ 54599878 (-)
LOC110490751 LOC106609299 coding upstream 460544 54879640 ~ 54964148 (-)
LOC110490333 LOC106576174 coding upstream 550347 54969443 ~ 55017031 (-)
LOC110490752 LOC106609295 coding upstream 620905 55040001 ~ 55053870 (-)
LOC110490754 NA coding upstream 718823 55136560 ~ 55147893 (-)
G1307593 NA non-coding downstream 4623 54405358 ~ 54406680 (-)
G1307599 NA non-coding downstream 11223 54399283 ~ 54400080 (-)
G1307531 LOC106576203 non-coding downstream 149709 54261082 ~ 54261594 (-)
G1307494 NA non-coding downstream 173589 54189976 ~ 54237714 (-)
G1307626 NA non-coding upstream 87955 54507051 ~ 54515880 (-)
G1307625 NA non-coding upstream 94712 54513808 ~ 54518006 (-)
G1307727 NA non-coding upstream 196177 54615273 ~ 54615484 (-)
G1307801 NA non-coding upstream 266803 54685899 ~ 54687794 (-)
G1307824 NA non-coding upstream 293464 54712560 ~ 54712789 (-)
G1307473 NA other downstream 260763 54150044 ~ 54150540 (-)
G1307309 NA other downstream 489175 53899310 ~ 53922128 (-)
G1306232 LOC106576137 other downstream 1349023 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 1601690 52630838 ~ 52809711 (-)
G1307901 NA other upstream 347876 54766972 ~ 54768422 (-)
LOC110490337 LOC106609287 other upstream 729679 55148760 ~ 55155353 (-)
LOC110490757 LOC106576193 other upstream 999227 55417169 ~ 55438953 (-)
G1308831 NA other upstream 1137136 55556232 ~ 55556574 (-)
G1308906 NA other upstream 1327189 55746285 ~ 55747753 (-)

Expression


Co-expression Network