LOC110490331 (LOC106576204)


Basic Information

Item Value
gene id LOC110490331
gene name LOC106576204
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54597626 ~ 54599878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563659.2
gcagccGAGCAAACAACTTCCATATTTGTTGCTCTCCTTCAACGATTCTGCAAATTCGGTTATtgatcccccttctctccccttctctctctagtgGTTATTATGTAATTATTCAACGGTTGCCTCCGCAGCTGGAGCCGCAGCTTGTGTTATGCTGGTAGCACacttgtgcatttgtgtgtgtctgtggtgagcgcgcgtgtgtgtgtgattttatgTCCTTTCGCGCTTCAGCTGCGAACACAGAGCACAGTTGTCGGTGTGGACTCGGCCCATACAGTCATTGGTCTCCGAAGAGGATCACAGTTGCGCTTTTCTTGAATAGCTCGAGCTCTAGGAGTGAAAAAGAAGCGGGAGGCGCGAGCTGAGCTTCCGGGTGTTGTTTGGCTAGAGAAAGCGCTCGAGAATGTCCTTGTATGACTGGAGCCAAGTCTTTTCCCGTGTTTGGAGCACGGAATTACTCCCGTTTTGAACTTGTTCCTGGTTCGTTTCCACCCTTTTGCCAAGGCGAGAATTTTCTGGATACTTTTGTGTGCAGAGAGGATTGTTTTATATTAGAAAGAGAACGGAAAGCTTTATTTTTCAAACAAGTCACTTTTACGCAGAGATGTCTTCTCGCCGCGCTGTGGTTTTGTGATCGCCCACCAGAGCGTCGAGAGCTCTTCACCGGGACCGAGTCTCACACAGTGGGTCACCATGGCAACGGGAGTGGCGGCGTGGTTACCCTTTGCCCGGGCTGCTGCTATAGGATGGATGCCGGTAGCCAGTGCGCCCATGCCGACGCCCCCGCCGGACAACCGGCGGAAGCAGGACGGGCTCATCTTGCTCAATGTCAGCGGACAGAAGTTCCAGACGTGGCGGAATACATTGGAGCGGTACCCGGACACTTTACTGGGCAGCACGGAGCGGGAATTTTTCTTCCACGAGGAGACAAACGAATACTTTTTCGACCGTGACCCGGATATTTTCAGACACATTCTGAACTTCTACCGTACCGGGAAGCTGCACTACCCGCGCCAGGAGTGCATCTCGGCCTACGATGAGGAGCTGGCCTTCTTTGGGATCATACCGGAGATCATAGGGGACTGTTGCTATGAAGAGTACAAGGACCGGCGGCGGGAGAACCAGGAAAGGATCCAGGATGACGAGGACAGCGAGAACCAGAACGATATGGTCCCGCCGGATATGACATTCAGAGAAACCATGTGGCGGGCCTTCGAGAACCCCCACACGAGCACCATGGCCCTGGTGTTTTATTATGTCACCGGCTTCTTCATTGCGGTTTCCGTGATGGCTAACGTGGTGGAGACGGTCCCGTGCGGGACTTTGCCAAATCGGGTCAAACAGGTGTCGTGCGGGGAGCGGTACGCCTTGGCATTTTTCTGTCTGGATACGGCCTGCGTCATGATCTTCACCGTGGAGTACCTGCTGCGTCTAATGGCGGCGCCCAGCCGCTGGAACTTCATCAAGAGCGTGATGAGTGTCATCGATGTGGTGGCCATTATGCCCTATTACATCGGCCTGGTCATGACTGACAACGAGGACGTCAGCGGGGCCTTCGTCACCCTGAGGGTCTTCCGCGTTTTCAGGATTTTCAAATTCTCCCGCCACTCTGCGGGGCTGCGCATCCTGGGCTACACGCTGAAGAGCTGCGCCTCGGAGCTGGGCTTCCTGCTCTTCTCCCTCACCATGGCCATCATCATCTTCGCCACCGTCATGTTCTATGCTGAGAAGGGCTCCTCAGCCAGCAAGTTCACCAGCATCCCAGCAGCCTTCTGGTACACCATCGTCACCATGACAACTCTGGGGTAGGTGCTGGTCCAGCTTACCATACAGTGTAGATGTGTGGTCACATGCTCAGGAGGTATGTTGTCGTGTCAACCCTAAATCAGCAGCATTGGTTTGCTGTTGCTCTCTCCTTTGAGTGTGTTCTCTCTACA

Function

NR:

description
potassium voltage-gated channel subfamily D member 2-like isoform X1

GO: NA

KEGG:

id description
K04892 KCND2, KV4.2; potassium voltage-gated channel Shal-related subfamily D member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563659.2 True 1940 mRNA 0.54 2 54597626 54599878

Neighbor

gene id symbol gene type direction distance location
LOC110490332 LOC106609300 coding downstream 178530 54411303 ~ 54419096 (-)
LOC110490329 LOC106609303 coding downstream 216780 54374625 ~ 54380846 (-)
LOC110490750 LOC106576170 coding downstream 226101 54305008 ~ 54371525 (-)
LOC110490327 LOC106609305 coding downstream 295069 54292157 ~ 54302557 (-)
sult4a1 LOC106576158 coding downstream 780584 53788678 ~ 53817042 (-)
LOC110490751 LOC106609299 coding upstream 279762 54879640 ~ 54964148 (-)
LOC110490333 LOC106576174 coding upstream 369565 54969443 ~ 55017031 (-)
LOC110490752 LOC106609295 coding upstream 440123 55040001 ~ 55053870 (-)
LOC110490754 NA coding upstream 538041 55136560 ~ 55147893 (-)
LOC110490337 LOC106609287 coding upstream 548882 55148760 ~ 55155353 (-)
G1307625 NA non-coding downstream 79620 54513808 ~ 54518006 (-)
G1307626 NA non-coding downstream 81746 54507051 ~ 54515880 (-)
G1307593 NA non-coding downstream 190946 54405358 ~ 54406680 (-)
G1307599 NA non-coding downstream 197546 54399283 ~ 54400080 (-)
G1307727 NA non-coding upstream 15395 54615273 ~ 54615484 (-)
G1307801 NA non-coding upstream 86021 54685899 ~ 54687794 (-)
G1307824 NA non-coding upstream 112682 54712560 ~ 54712789 (-)
G1307832 NA non-coding upstream 116341 54716219 ~ 54716571 (-)
G1307833 NA non-coding upstream 117149 54717027 ~ 54717247 (-)
G1307473 NA other downstream 447086 54150044 ~ 54150540 (-)
G1307309 NA other downstream 675498 53899310 ~ 53922128 (-)
efcab6 efcab6 other downstream 840278 53756479 ~ 53786697 (-)
G1306232 LOC106576137 other downstream 1535346 53054849 ~ 53062280 (-)
LOC110490288 LOC106609184 other downstream 1788013 52630838 ~ 52809711 (-)
G1307901 NA other upstream 167094 54766972 ~ 54768422 (-)
LOC110490757 LOC106576193 other upstream 818445 55417169 ~ 55438953 (-)
G1308831 NA other upstream 956354 55556232 ~ 55556574 (-)
G1308906 NA other upstream 1146407 55746285 ~ 55747753 (-)

Expression


Co-expression Network