LOC110490334 (LOC106609296)


Basic Information

Item Value
gene id LOC110490334
gene name LOC106609296
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55027671 ~ 55039809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563662.2
GACATGTAACATCAGTATCACATGAGCAGTGTGTGCATTTAAAGGTCGACCAGCCAGGAAGTTGAGGTAGCTAGCCTAGCTATGTTATCAATTTTGCCATCATAATGGGATAGTATAAGATAACCTGCATGTTGAATGAAAGCATGACTACTTTTAAAGAGTTCTGTCATTACTCATAAAAACGTCTGCATCTAAAGCAGGTAGGTTTTAGGCTTAGCCAGATAGCCAGCCATTCAAGCTGGACTGGTGCAGTTTAGCTTGAGTCGCCTACTAGTCAGTTTCTAAACCTATACTGTCTTGGTAGTAGTGCTGTGTGGTATGGTTTGACAAGTATGATTGTGGTATGGTTTGACAGGGCCAGGACAATTACAGAGCTAAATCCTGTGGTGTTATTAGATTGaatgatcatcaaggacaacaaccacctgagccactgcctgttcacactgctatcatccagaaggcgagGTTTGCTGGGGGAAATATGCTGGGACTTGTAGGCTTCATAGGGGGTGACCTCCATGCTACGTCTGGGAGACTCCTGAGATGCACCTTGAGGTCTTCAACAGTCCAACAGACTTCTGGCTCCACACACCACCCCCAGGGGGCATGGCTCGCCTCACAGGCACCCCTCTGTGGACACCATACCCCTAAACATAGGACCGGGCTATATGGCCCTTTTACACACCCGCAACAGACACTGGGGAGTTCCCGTGGCCCCTTCTCCCTACCCCTTTTCACCCAGAGGGTCGCCCTCTCCCAGGGACCCAACACCTCCACAGCCAAGATCAGGCTGCGAACGCGGCTGGTGGTCACCCTGCTTTTCGGCGGGGGACTGCTTGGCACCTGGTGGTACGTGCGTAAGGAGAAGCAGCAAAATCACCAAATGCAGCGTATAGAGCAGTTGAAAAAGGTGGCCCTGGGCCAGGGAGACTTCAGCCTCCTCGACCACAGGGGGCACCGCAGGACCAAGAGAGACTTCCTGGGTAGCTGGGTGCTCCTCTACTTTGGCTTCACCCACTGCCCTGACATCTGCCCCGATGAGCTGGATAAGATATCTGCTGTGGTCAGCGCTCTGGACAAGGACCgatctctcccagcggtccaacCGCTGTTTGTGACGGTCGACCCGGAACGAGACGACGTGGCGGCCCTGGAGAGGTACGTGAAGGACTTCCACCCCCGGCTGATCGGCCTGACGGGTACCCCAGAGGAGGTGAAGGTGGCGGGGAAGGACTACAGGGTGTACGCCAGCCCTGGACCGAAGGATGAGGACGGGGACTATATAGTGGACCACACCATCCTCATCTACCTGGTCAACCCAGATGGGCTGTTCCTGGACTATTACAACAGGATGAAGGATGACGTGCAGATCGCTGAGAGCGTCAGGAACCATATGAAGAGCTACGTCAAACTCTCTGAATGAATGACTGTAACCACACCAACAAGACTATCAAAGACCTTTGGTATGTTACACTTAAGCTGAACCCAATGTCCAGATAACAACAATCCTCCATCAGAAATGAGGCCCTGTGAATTGTTctcagaccagactgaaccacaACAATATGGACGCTTCATCGAGGCTATGATGATTCTGTGTGTGCAATAAGTTGTTTTTGTCCGACACCAATAATGGTTAGGATATGAAATTGTCTTCATACTAGTCTTTTGTCAAGGGCACTACAATCACTAGTATACAGACACTAGTAGGTGTTGCAGTATTGAAAGTGTCTTCATATAATCTTCGTAAAATCTACATGCTCGTTTTATTTTATACACGTTTTTGGCCGttgtaaaaaaaatctatataattTCCATACAAACCAGTGAAACATAATTTCCCAATTTAGGTTGATCTCTTGAATGAAAGAAAAATTATCACATCCTCTCATCTGATATAGAAAATGTATGAGTTCTACACCACTTGGACAAATATGCAAATAAAAACCAACGTATAGAATT
>XM_021563663.2
GACATGTAACATCAGTATCACATGAGCAGTGTGTGCATTTAAAGGTCGACCAGCCAGGAAGTTGAGGTAGCTAGCCTAGCTATGTTATCAATTTTGCCATCATAATGGGATAGTATAAGATAACCTGCATGTTGAATGAAAGCATGACTACTTTTAAAGAGTTCTGTCATTACTCATAAAAACGTCTGCATCTAAAGCAGGGCCAGGACAATTACAGAGCTAAATCCTGTGGTGTTATTAGATTGaatgatcatcaaggacaacaaccacctgagccactgcctgttcacactgctatcatccagaaggcgagGTTTGCTGGGGGAAATATGCTGGGACTTGTAGGCTTCATAGGGGGTGACCTCCATGCTACGTCTGGGAGACTCCTGAGATGCACCTTGAGGTCTTCAACAGTCCAACAGACTTCTGGCTCCACACACCACCCCCAGGGGGCATGGCTCGCCTCACAGGCACCCCTCTGTGGACACCATACCCCTAAACATAGGACCGGGCTATATGGCCCTTTTACACACCCGCAACAGACACTGGGGAGTTCCCGTGGCCCCTTCTCCCTACCCCTTTTCACCCAGAGGGTCGCCCTCTCCCAGGGACCCAACACCTCCACAGCCAAGATCAGGCTGCGAACGCGGCTGGTGGTCACCCTGCTTTTCGGCGGGGGACTGCTTGGCACCTGGTGGTACGTGCGTAAGGAGAAGCAGCAAAATCACCAAATGCAGCGTATAGAGCAGTTGAAAAAGGTGGCCCTGGGCCAGGGAGACTTCAGCCTCCTCGACCACAGGGGGCACCGCAGGACCAAGAGAGACTTCCTGGGTAGCTGGGTGCTCCTCTACTTTGGCTTCACCCACTGCCCTGACATCTGCCCCGATGAGCTGGATAAGATATCTGCTGTGGTCAGCGCTCTGGACAAGGACCgatctctcccagcggtccaacCGCTGTTTGTGACGGTCGACCCGGAACGAGACGACGTGGCGGCCCTGGAGAGGTACGTGAAGGACTTCCACCCCCGGCTGATCGGCCTGACGGGTACCCCAGAGGAGGTGAAGGTGGCGGGGAAGGACTACAGGGTGTACGCCAGCCCTGGACCGAAGGATGAGGACGGGGACTATATAGTGGACCACACCATCCTCATCTACCTGGTCAACCCAGATGGGCTGTTCCTGGACTATTACAACAGGATGAAGGATGACGTGCAGATCGCTGAGAGCGTCAGGAACCATATGAAGAGCTACGTCAAACTCTCTGAATGAATGACTGTAACCACACCAACAAGACTATCAAAGACCTTTGGTATGTTACACTTAAGCTGAACCCAATGTCCAGATAACAACAATCCTCCATCAGAAATGAGGCCCTGTGAATTGTTctcagaccagactgaaccacaACAATATGGACGCTTCATCGAGGCTATGATGATTCTGTGTGTGCAATAAGTTGTTTTTGTCCGACACCAATAATGGTTAGGATATGAAATTGTCTTCATACTAGTCTTTTGTCAAGGGCACTACAATCACTAGTATACAGACACTAGTAGGTGTTGCAGTATTGAAAGTGTCTTCATATAATCTTCGTAAAATCTACATGCTCGTTTTATTTTATACACGTTTTTGGCCGttgtaaaaaaaatctatataattTCCATACAAACCAGTGAAACATAATTTCCCAATTTAGGTTGATCTCTTGAATGAAAGAAAAATTATCACATCCTCTCATCTGATATAGAAAATGTATGAGTTCTACACCACTTGGACAAATATGCAAATAAAAACCAACGTATAGAATT
>XM_021563664.2
GACATGTAACATCAGTATCACATGAGCAGTGTGTGCATTTAAAGGTCGACCAGCCAGGAAGTTGAGGTAGCTAGCCTAGCTATGTTATCAATTTTGCCATCATAATGGGATAGTATAAGATAACCTGCATGTTGAATGAAAGCATGACTACTTTTAAAGAGTTCTGTCATTACTCATAAAAACGTCTGCATCTAAAGCAGGTTTGCTGGGGGAAATATGCTGGGACTTGTAGGCTTCATAGGGGGTGACCTCCATGCTACGTCTGGGAGACTCCTGAGATGCACCTTGAGGTCTTCAACAGTCCAACAGACTTCTGGCTCCACACACCACCCCCAGGGGGCATGGCTCGCCTCACAGGCACCCCTCTGTGGACACCATACCCCTAAACATAGGACCGGGCTATATGGCCCTTTTACACACCCGCAACAGACACTGGGGAGTTCCCGTGGCCCCTTCTCCCTACCCCTTTTCACCCAGAGGGTCGCCCTCTCCCAGGGACCCAACACCTCCACAGCCAAGATCAGGCTGCGAACGCGGCTGGTGGTCACCCTGCTTTTCGGCGGGGGACTGCTTGGCACCTGGTGGTACGTGCGTAAGGAGAAGCAGCAAAATCACCAAATGCAGCGTATAGAGCAGTTGAAAAAGGTGGCCCTGGGCCAGGGAGACTTCAGCCTCCTCGACCACAGGGGGCACCGCAGGACCAAGAGAGACTTCCTGGGTAGCTGGGTGCTCCTCTACTTTGGCTTCACCCACTGCCCTGACATCTGCCCCGATGAGCTGGATAAGATATCTGCTGTGGTCAGCGCTCTGGACAAGGACCgatctctcccagcggtccaacCGCTGTTTGTGACGGTCGACCCGGAACGAGACGACGTGGCGGCCCTGGAGAGGTACGTGAAGGACTTCCACCCCCGGCTGATCGGCCTGACGGGTACCCCAGAGGAGGTGAAGGTGGCGGGGAAGGACTACAGGGTGTACGCCAGCCCTGGACCGAAGGATGAGGACGGGGACTATATAGTGGACCACACCATCCTCATCTACCTGGTCAACCCAGATGGGCTGTTCCTGGACTATTACAACAGGATGAAGGATGACGTGCAGATCGCTGAGAGCGTCAGGAACCATATGAAGAGCTACGTCAAACTCTCTGAATGAATGACTGTAACCACACCAACAAGACTATCAAAGACCTTTGGTATGTTACACTTAAGCTGAACCCAATGTCCAGATAACAACAATCCTCCATCAGAAATGAGGCCCTGTGAATTGTTctcagaccagactgaaccacaACAATATGGACGCTTCATCGAGGCTATGATGATTCTGTGTGTGCAATAAGTTGTTTTTGTCCGACACCAATAATGGTTAGGATATGAAATTGTCTTCATACTAGTCTTTTGTCAAGGGCACTACAATCACTAGTATACAGACACTAGTAGGTGTTGCAGTATTGAAAGTGTCTTCATATAATCTTCGTAAAATCTACATGCTCGTTTTATTTTATACACGTTTTTGGCCGttgtaaaaaaaatctatataattTCCATACAAACCAGTGAAACATAATTTCCCAATTTAGGTTGATCTCTTGAATGAAAGAAAAATTATCACATCCTCTCATCTGATATAGAAAATGTATGAGTTCTACACCACTTGGACAAATATGCAAATAAAAACCAACGTATAGAATT

Function

NR:

description
protein SCO2 homolog, mitochondrial-like

GO: NA

KEGG:

id description
K23755 SCO2; protein SCO2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563662.2 False 1965 mRNA 0.48 3 55027671 55039809
XM_021563663.2 False 1810 mRNA 0.49 3 55027671 55039809
XM_021563664.2 True 1697 mRNA 0.49 2 55027671 55039809

Neighbor

gene id symbol gene type direction distance location
LOC118938814 NA coding upstream 9280 55016905 ~ 55018391 (+)
LOC110490330 LOC106576173 coding upstream 628243 54383635 ~ 54399850 (+)
LOC110490325 LOC106576169 coding upstream 745884 54267330 ~ 54281787 (+)
LOC110490324 LOC106576203 coding upstream 763873 54256504 ~ 54263798 (+)
LOC110490323 LOC106576167 coding upstream 771305 54145538 ~ 54256366 (+)
LOC100272211 socs2 coding downstream 17043 55056852 ~ 55063742 (+)
LOC110490753 LOC106609289 coding downstream 72791 55112600 ~ 55137177 (+)
LOC110490339 LOC106576184 coding downstream 117897 55157706 ~ 55170847 (+)
LOC110490340 pahx coding downstream 178783 55218592 ~ 55224435 (+)
LOC110490342 NA coding downstream 200187 55239996 ~ 55243832 (+)
G1308059 NA non-coding upstream 38595 54969458 ~ 54989076 (+)
G1308005 LOC106576205 non-coding upstream 142688 54883809 ~ 54884983 (+)
G1308004 NA non-coding upstream 144064 54880803 ~ 54883607 (+)
G1308002 NA non-coding upstream 153154 54874285 ~ 54874517 (+)
G1308102 NA non-coding downstream 2243 55042052 ~ 55044190 (+)
G1308107 NA non-coding downstream 8679 55048488 ~ 55048883 (+)
G1308108 NA non-coding downstream 11814 55051623 ~ 55051868 (+)
G1308155 NA non-coding downstream 83592 55123401 ~ 55123859 (+)
LOC110490314 LOC106576157 other upstream 1137280 53875911 ~ 53890829 (+)
G1306708 NA other upstream 1444319 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 1652259 53352462 ~ 53471763 (+)
G1305302 NA other upstream 2514621 52512629 ~ 52513050 (+)
G1304886 NA other upstream 3112661 51914597 ~ 51915010 (+)
G1308238 NA other downstream 223149 55262958 ~ 55278451 (+)
G1308299 LOC106576208 other downstream 308227 55348036 ~ 55349205 (+)
LOC110490357 LOC106609270 other downstream 530209 55569924 ~ 55583925 (+)
G1309147 NA other downstream 976639 56016448 ~ 56016948 (+)

Expression


Co-expression Network