LOC110490754


Basic Information

Item Value
gene id LOC110490754
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55136560 ~ 55147893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490754
ATGTCTAGTACAGTATTTGCAATCAAGCGTAATCATCCCTCCCTCGACCACGCGTATCCACAACAGAAAGTGGAGAAATCACTTGAGACCGAGGCTGTGCTGCGGGATGAGTTTACCCAGGGGCAAGGAGAGCTGAAGTGTCTCCTTAGTGACAAGCAAACCGCCCAGGTGAAACTGCAGCTGCTGCTGGCTGAGCCCAGAGGAGAGATGCCTGAGGAGCTACGACTACAGCCCCCCCAGCGGCTGGAGCTGTTGAGGGCCCAGGTGCAGCAGGAGATGGAGGGGCCTGTCAGAGAGCGCTTCAACAAACTGGAGGGGGAGACTGAGAAGTACAGGTCTGAGTATAACAAGCTGCGGTACGACTACACCTTCCTGAAGTCTGAGTTTGACcgccagagagaggagagcgctCACATACTGGAGGAGAAGATCCGCTTTGATGCTGAGGTTTCACGGCTGGAAAGGGACAGAGCGGAGCTGATGGCCCAGTATCAGGGCACAGACCCGTCGAGAGACTGTAAACGCATTGAGTCTCTGCTGAGAGAGAAGGCCCAGCTCCACCTGCATCTGAAGGGCCTGGAGGCTGACGTGGCTGAGCTCCGGGCCCAGAGGGACAACTCTGGCCAGCAAGCCGAGAACGTGCAGCACATCCAGGTCCGCCAGTTCGTAGAATCCCAGGCTGCAGCCAAGTCACTGGAGGCAGAGAGGCAGTCACTGCGCCTGCAGTCGGAGCGTCTGGGGAGCGAGTTGCAGCTGAGTCATGAACAGAACACCCAGCTGACCGGCAGACTACACAAGACTGAGAGAGAGATCATCAGCTGTATTTCTAaatagcagatGGCGAGGCACTCTCACAAGCTGGAGTTGGCCAATGTGAAGCCGGAGTGTGCCAGGTCtagaggggaagtggagagggagagaggcgcaCTACAGGGCCAAAGGGAAGgtATGCAGTCTGATGTGGTGTTGAAGGGGATggtggagagacagaaggaggtgctggctgagagggagggggaaCTCGTCCGGAGGGTGCAGGCCGCTCGCGACGAGGAGTACCACAAAACAGCCACCGTGCACGAGGAGAAtgtgtgtgtgttcaggttcGTGCTGGAGGATTCTCTGGCTGAACTGGAGCAGCAGAGGGCGCTACAGGATGCTGCTGGCCACACCCAGAAAGAGGAGTGTGAGGAGCGTCTCCATGGCGCCCAGCTGGGGGAGGAGTCTGCTCATAAGGAATTGCAGAACCTCAGGACTAAATTGCAGCAGCAGGGCTCTCAGCTGGAGGAAATGGAGACACAGAAGACAGAATGCCAATCTGAGACGGGTACTAAATTGCCTGAGGCTCAGCGCCTGACTGACATTCCGTTTCAGAACCAGGAGCTGGGGTTGCAGCTGGGTACGTTGTCCCACTCCGAGGCTGAGCTTCTGGAGTCCAACCAGTGTCTGAGGGAAACCCTGGAGAGGGCCCGGGAGGACCTGAGGAGCGCCCACTCACAAGCTGAGAGGACCCAACACGAAGCCGAGCGaTTGGTGGAGGAGCGTCGTGTGGAGGGGTTCGAGGAGAAAAACAAACTGCAGGAGAGGGATGCAGAGCTGCAGGAGAAGTACGGCTTGGCCAAGGAGAAACTACAGAGGGCTGCGCTGGCACAGAAAAAGAGGAAAAACATGACTGAGAACAAGGAGAAGAGATACCAGGATAAGATCCAGCTACTGGAGGCTAAGATGGCAGAGCTGGAGCTACAGACCAGCTCAGCCAAGAAGTATGTTTATTTtcttactgtgtgtgttttaagACCAGTATGCGTGTTCCTCCTCAGTCGTCCTTCCTTCACCGAGGAGCATGCCCTCCTTAACAGACGACTGAAGGAGCTGCAGCGCCGACACAGCGAGTTCCGACGCCTCCATTCCCGGCCCAGGACTCGGCCCTATCTCCATCCTCGTACCTGGCAATATGGTAGAGGTCACTGCTCCATCCCTTTCTGTCCCTTCTCATCCTCTTTCTCCCCACCCCACTCTTTCTCTCAGGAGGAGCAGCACCAGAGAGGGTTATCACTGCTGCGTCGGAGGCTGGAGGAGGTAGCCTGTACTCAGAAGCAGCAGCAGATGGAGGAACTGGGGCCTCCCATGGACAGGGGCTCTGGCCTGCACGACTCTCTCCCTGAACTCTGACCTCTCCACACTGACCCCACCCCCCCAGAGAGTGAGCGTGACCTTCGCTGTAGGATTTATTACTCCCTAGAAGTGATGTTTTAATTTAAGTGAGCTCTCAAATATTTTGTG
>TU1492939
ctgtgtacatgaccaataaacTTTTGATTTGATAGGTGTTAGCAATATGGTAGAGGTCACTGCTCCATCCCTTTCTGTCCCTTCTCATCCTCTTTCTCCCCACCCCACTCTTTCTCTCAGGAGGAGCAGCACCAGAGAGGGTTATCACTGCTGCGTCGGAGGCTGGAGGAGGTAGCCTGTACTCAGAAGCAGCAGCAGATGGAGGAACTGGGGCCTCCCATGGACAGGGGCTCTGGCCTGCACGACTCTCTCCCTGAACTCTGACCTCTCCACACTGACCCCACCCCCCCAGAGAGTGAGCGTGACCTTCGCTGTAGGATTTATTACTCCCTAGAAGTGATGTTTTAATTTAAGTGAGCTCTCAAATATTTTGTGAACCATTTTATTGGCACAAAACATATCAAATGAAAAGAGAAAGAACTACATGGATTCAATGTTTACGTGCCTTGGTGAGTAACGGTGCTGGAGTCCTTCCcagaacatgcaaactgctttttatactgttcaacataccttgtgtcaattgaagcttatcctcaatactgacaaaactaaactaatggtgttttctaatgcaagaaatagacctcaacctttcacctattactacctgtcagggcaaggagattgaggttgtaacctcataaatATCTTGATAATGGCCTCTcttttttaaattgcatattcaacatcttacaaaaaaatgaaagctgaaattgggattttattttaggaataaggcctggcTTTTGAAGCCAGGAGGCTAGTATCAgttacatttatgcctttactagactgtggggatattttatatatgaatgcttccgctcagtgtttgagatcatttGACACtatttaccatggcactttgagatttattttaaactgcaaaactcttacgcaccactgcactttgtataccagggttggctggccttctctagtcactcgtaggctcagtcactggtatacttttatttacaaagccattttatttgggcatttttattgttcagaaatgtggtgggtactctctttgtTCGCAGGACTTTATCCTGCTGACTGTTCCAAacgtccgaactgaatttggtaaaagggttTTTATGTACTCTGCTCcgtcgtcttggaacaccttacaaaatacttttaaactggaagaacttcaATCAcagatgaaggattttgaggctgattccctgacctttcagtgtttttaatttgctgttttatacttgTGTGAAGTccatggtttttactagattacttgtctgtctgtaatttttttgtaatgactcggtgctgcctatcttggccagggtgctcttgaaaaagagattttaatctcaatgagcccttcctggtta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490754 False 2283 mRNA 0.56 15 55137919 55147893
TU1492939 True 1364 lncRNA 0.41 2 55136560 55138293

Neighbor

gene id symbol gene type direction distance location
LOC110490752 LOC106609295 coding downstream 84049 55040001 ~ 55053870 (-)
LOC110490333 LOC106576174 coding downstream 120888 54969443 ~ 55017031 (-)
LOC110490751 LOC106609299 coding downstream 173771 54879640 ~ 54964148 (-)
LOC110490331 LOC106576204 coding downstream 538041 54597626 ~ 54599878 (-)
LOC110490332 LOC106609300 coding downstream 718823 54411303 ~ 54419096 (-)
LOC110490337 LOC106609287 coding upstream 867 55148760 ~ 55155353 (-)
LOC110490338 LOC106576183 coding upstream 23024 55170917 ~ 55217377 (-)
LOC110490755 mcm10 coding upstream 81011 55228904 ~ 55235465 (-)
LOC110490341 optn coding upstream 88761 55236654 ~ 55251104 (-)
LOC110490344 LOC106576188 coding upstream 115051 55262938 ~ 55330752 (-)
G1308608 NA non-coding downstream 65108 55072592 ~ 55072811 (-)
G1308593 NA non-coding downstream 87598 55050107 ~ 55050321 (-)
G1308592 NA non-coding downstream 91933 55045762 ~ 55045986 (-)
G1308578 NA non-coding downstream 102455 55027742 ~ 55035464 (-)
G1308517 NA non-coding downstream 261703 54875988 ~ 54876216 (-)
G1308637 NA non-coding upstream 8028 55155921 ~ 55156228 (-)
G1308681 NA non-coding upstream 87618 55235511 ~ 55235761 (-)
G1308682 NA non-coding upstream 88046 55235939 ~ 55236208 (-)
G1308683 NA non-coding upstream 92720 55240613 ~ 55242374 (-)
G1307901 NA other downstream 369497 54766972 ~ 54768422 (-)
G1307473 NA other downstream 987379 54150044 ~ 54150540 (-)
G1307309 NA other downstream 1215791 53899310 ~ 53922128 (-)
efcab6 efcab6 other downstream 1380571 53756479 ~ 53786697 (-)
G1306232 LOC106576137 other downstream 2075639 53054849 ~ 53062280 (-)
LOC110490757 LOC106576193 other upstream 270430 55417169 ~ 55438953 (-)
G1308831 NA other upstream 408339 55556232 ~ 55556574 (-)
G1308906 NA other upstream 598392 55746285 ~ 55747753 (-)
G1309187 NA other upstream 906598 56054491 ~ 56055064 (-)

Expression


Co-expression Network