LOC110490338 (LOC106576183)


Basic Information

Item Value
gene id LOC110490338
gene name LOC106576183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55170917 ~ 55217377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563668.2
GAAGGGCCATATTGGTGCTGCTGGGAGGCGGCCACCAATCGCATTCAgtttctttctcccctctctctccatgtcagcAGCAGCATAGGCGGAGGCGTCAGAATGCGGGCAGCCAAAGCTTGCACCCCTACCGGTTCATCCACAGACACAATCCGTTCTCACTCCCCATAAACTCCCTGCTCGTCATAGAAGTGAGCTTTCGGAATATggtctgtaatgtttatcatTTGAATTTTGAAGACGGTGTTCATGTGAGAACATTCTGTACGGAATAATGTGAACAAGAGAAAAGCAAGACGTAGACGAACAGTTTTTTACGGGTGGGTGGAAAAACAGGCATCCGGCCTCCGAGGAAGCGCCTATCGAGGTGTGGAAGTCAGATCGAAACAAAGTACATCGTTTCTGGCCCTGCCAGCCCAGCCAACCCTGAGGAGTGTGTGATGGAGAAGATGAAGAGGTTTAAGCGGCGTCTGTCTCTAACGCTGCGCTCCAGCCACACCATAGACGAGTCTCTGTCTGAACTGGCCGAGCAGATGACCATCGAGGACGGCGGCAACAAGGACAGCGAGCCGATCGTGCGTAATGGGCGACCGCCCTCCTCCCACAGCATGCACTCGTTCCTGCACCAGTACACCGGCTCCTTCAAGAAGCCCCCCCTCCGCAGACCACACAGTGTCATCGGAGGAAGCCTGGGCTCCTTCATGACCTTCCCCAGCAACGGCAGCCGCCTCGACATCGTCCATGAGAACCTGAAGATGGGCTCAGACGGGGAGAGTGACCAGGCGTCTGGGACGTCGTCGGACGAGGTGCAGTCGCCCACCGGGGTGTGTCTGAGGAACAGGGTGCAACGACGCATCTCCATGGAGgacctGAACAAGCGTCTGTCTCTGCCTGCTGACATCCGTATCCCTGACGGTTACCTGGAGAAGCTGCAGCTGAGCAGCCCTACCTTCGACCAGCCCCTCAGCCGACTCTCACGCAGGGCCTCACTGTCAGAGATTGGTTTTGGGAAGCTGGAGACCTACATCAAACTGGACAAACTGGGAGAGGGGACCTATGCTACAGTATTTAAGGGGCGCAGTAAGCTGACTGACAACCTGGTGGCGCTAAAGGAGATCAGGCTGGAGCACGAAGAGGGAGCACCCTGCACTGCCATCAGAGAAGtgTCGTTACTGAAGGACCTGAAACATGCCAACATCGTGACCTTACATGACATTGTCCACACAGACAAGAGCCTGACGCTGGTCTTCGAGTACCTGGATAAAGACCTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGTATGCACAACGTCAAGATCTTCTTGTTCCAGATTTTGCGGGGGTTGGCGTACTGCCACAAGCGGAAGGTTCTCCACAGAGACCTAAAGCCCCAGAACCTGCTCATCAACGAGAGAGGGGAACTCAAACTGGCTGACTTCGGTCTGGCGCGGGCTAAGTCTGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACTCTGTGGTACCGGCCTCCTGACGTCCTGCTAGGCTCCTCCGAGTACTCCACACAGATTGACATGTGgggtgtgggGTGTATATTTTATGAGATGGCTGCAGGTCGGCCCCTGTTTCCTGGCTCCACCGTAGAGGACGAGCTCCACCTCATATTCAGACTGCTGGgcaCGCCATCAGAGGACAACTGGCCAGGGATCTCTGGCGTCGAGGAATTCAAATCCTACAACTTCCCCAAATACAAACCTCAGCCGTTCATCAACCATGCGCCCAGgTTGGACACAGAAGGCATTGAGCTAGTGTTATCATTCCTGAAAtatGAGTCCAAGAAGAGGATCTCAGCAGATGAAGCTATGAAGCAGGCCTACTTCAAGAGCCTGGGGACACAGGTCCACACACTGCATGAGAgtataTCAATATTCACTCTGAAGGATATCCAACTGCAGAGAGACCCTGGCTATCGGAACTCCTCACACCTAGAGTCAGGCAACAGCAAGAACAGAAGACAGAGCATGCTCTTCTAGACGGTCTGCTCCCGCCGCTCCAGGGTGGAGCTGGTTCCTGTTGCTATAGTAACCGACTCTCGCTTGGGATGAGAATGAACAGGACAGAGCCCCCTCTCGCATGAGCCCCTCACCCCTGGAGAGACCCCCTCACCCCCATAGAGCGAGTGAGTCTGGAGTTGattggggagggagagatgaactACGTTTATTTATTTGAAGATATGGAAGGGGGGTAGGGGGTATATTTTGCTGCTaaactactactgtctgtatttAACACGCAGTTTGTGTATATGATTATGTGAACTCCGACACCATGCACAATCGACCAGTCGCTAAGGTTACTATTGTTATTGATATGAATTATGGTTATTATGATTCCACTGATGATCTCGATGTTGTTTATCATAGCTGTTACCTTTGCTGTTGTGCATGTCGTTGTGTTCTGAGACTGAATGCCTTCTTAGCATTTTTTTCTCAAGTACTTTCTCAAGCTTCCTCTGATGGCAGTGTGACTGAAGTGAGACCAGACCAGTGCAgactaggagagagggactgggagtgTCTGGTCCTCAACTGGAAATCTTTCATCTGAACTGAATAATTTCCCggcctccctctcattctccttgACCTAGAACGTTTCAGGAGCCAGACGGGGGTTAGGAAGGGGTCAAAATGGGGTTGAGATGGGGTCCAGTCGTCAGGAGAGCACAACGACCGTCAGTTTTTTAGCCAACGAATGGGACCACAGCAGAAGGTGGAGTTTGACTCCCCAGGACATTTCCGGTCTCCCTCGCTGCTTGTCATGGCAATAGGAAAGCGGCGATTagggaggagagaaacacagTAATGTGACCTCCCGAAGGAACCCAtcggtctctccctctgtttccccccagGATGGTCTTGACTTAAGTTATTGTATGCAAGTTCTTAATTTTCTCTTCTTGCCtttttggaggtctacaaataCCGGCTGTTTTTGTGCATCATCAATAACTGTAAGCAGTTACTAGTTTTTTGAATGGCTCTCTACTCTGTAGCTGGCCATGGGAGTGGGGATGTACCATGATTTCAGGGCAATACTAGGATGACTGGTGCTTTAAAATGGCTGACTTGATTTGACAGTATTAAGAgatttttgttttctatgtttgaCCTTTCCTTGTGAATACAGTGTCGTGTGGCATGTCAAGGGGCAGCAGCTTCGCCTCTCAAAGGAGAAAAAATACTTGTTGTTTCAGTCTGCATTGGACCACTTGTCTCTATTTCCAGCGTTTGTACACATTTCAAATTGAAATTTTAAATAGACTTAAGCCGCTGTGTGTGTTTAACTGACAGTGTTGTATATTAATATTGTCATACTGTACTTTTTCAAGTTTAAGAATGACCTGAGCTTACCTGACATGGAATGCCAGCTGTGGtaacttaacctctctgggacaCTGACAGTTGGTGGTCCTGTACCTCTTTTTACTGGAACTATTTATTTCTCATAATCACAGTAAAATGTGTCTGTTTGCTAAA

Function

NR:

description
cyclin-dependent kinase 17 isoform X1

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563668.2 True 3533 mRNA 0.50 16 55170917 55217377

Neighbor

gene id symbol gene type direction distance location
LOC110490337 LOC106609287 coding downstream 15564 55148760 ~ 55155353 (-)
LOC110490754 NA coding downstream 23024 55136560 ~ 55147893 (-)
LOC110490752 LOC106609295 coding downstream 117047 55040001 ~ 55053870 (-)
LOC110490333 LOC106576174 coding downstream 153886 54969443 ~ 55017031 (-)
LOC110490751 LOC106609299 coding downstream 206769 54879640 ~ 54964148 (-)
LOC110490755 mcm10 coding upstream 11527 55228904 ~ 55235465 (-)
LOC110490341 optn coding upstream 19277 55236654 ~ 55251104 (-)
LOC110490344 LOC106576188 coding upstream 45567 55262938 ~ 55330752 (-)
LOC110490346 LOC106576189 coding upstream 114895 55332272 ~ 55342699 (-)
LOC110490348 LOC100136332 coding upstream 139737 55355672 ~ 55374104 (-)
G1308637 NA non-coding downstream 14689 55155921 ~ 55156228 (-)
G1308608 NA non-coding downstream 98106 55072592 ~ 55072811 (-)
G1308593 NA non-coding downstream 120596 55050107 ~ 55050321 (-)
G1308592 NA non-coding downstream 124931 55045762 ~ 55045986 (-)
G1308681 NA non-coding upstream 18134 55235511 ~ 55235761 (-)
G1308682 NA non-coding upstream 18562 55235939 ~ 55236208 (-)
G1308683 NA non-coding upstream 23236 55240613 ~ 55242374 (-)
G1308694 NA non-coding upstream 66995 55284372 ~ 55284684 (-)
G1307901 NA other downstream 402495 54766972 ~ 54768422 (-)
G1307473 NA other downstream 1020377 54150044 ~ 54150540 (-)
G1307309 NA other downstream 1248789 53899310 ~ 53922128 (-)
efcab6 efcab6 other downstream 1413569 53756479 ~ 53786697 (-)
LOC110490757 LOC106576193 other upstream 200946 55417169 ~ 55438953 (-)
G1308831 NA other upstream 338855 55556232 ~ 55556574 (-)
G1308906 NA other upstream 528908 55746285 ~ 55747753 (-)
G1309187 NA other upstream 837114 56054491 ~ 56055064 (-)
G1310261 LOC106609352 other upstream 1754364 56971741 ~ 56973518 (-)

Expression


Co-expression Network