LOC110490340 (pahx)


Basic Information

Item Value
gene id LOC110490340
gene name pahx
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55218592 ~ 55224435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563673.2
CTTCGACCTAGTTGGAGAGTATGACAGCAGCAGCATACTGTAGCTCTACATAACAGTGGGCATATGACTGTCTGCGCATCGAAGGgaatacagaataaaacatattcttGCAAAATGTCTCGAGCGGCAGACAGACTGAAAGTGGTCGTGAATCATCTAGATCGACCATCTTCTTTTGTTCAAGCATCTACCTCTGGCCAAAACGTTACCTACTATCAACCACAAGCACTGAGGTATTCCTTTGACAATGATCTGCTGAGCACTGAGCAGAGAATCTCCTATGAGGAGGATGGGTTCCTCCTTATCAAGGGCCTGGTGTCTGGGGAGGACATTGACAGATTCAGGGTGGCGTTTGAGCGGATATGCCGTCGGGAGGTGCAGGTCCCGGGACTGGTGGTGATGAGGGACGTGTCCATCGCCAAGTCAGAGTTCGTCCCTAACCAGAAGGCCATCTCCAAGCTGCAGGACTTCCAGGAAGAGCCTGAGTTATTCCGCTACTGTAGCCTGCCTCAGATCCTGAATTATGTGGAGTGTTTCACTGGTCCCAACATCATGGCCATGCACACCATGCTGATCAACAAGCCCCCAGACACAGGTAATAAGACATCTCGCCACCCCATGCACCAGGACCTGCATTATTTTCCATTCCGTCCGGCGGACCGTATTGTCTGTTCCTGGACCGCCATGGAGAAGATTCACCGCCAGAACGGCTGTCTGGTGGTCCTTCCTGGTTCTCACCACGGCACCCTCAAAGAACACGACTACCCAGAGTGGgagGGTGGGGTCAATAAGATGTACCACGGTGTCCGTGACCACGACCCCAATCATCCCAGGGTGCACCtggagatggagaaaggagaCACAGTGTTCTTTCACCCTCTATTGATCCATGGATCTGGAATGAACCAGACGCAGGGTTTCCGCAAGgccatcTCCTGCCACTATGCCAGTGCTGACTGCTACTACATTGACGTGAGGGGAACCACCCAGGAGAACATAGGCCAGGAGGTGAAAGAGATCGCAGCAAGAAAATACGCTGTTAATGACGTCACATTTGAGGATACCTGGGCTGTAAGGGGCCGTCTGGTGCAAGGGGATAGGACCAATCTGTGAGAGAGCCCGCCCACCACAGTGTGACGGTCACTCACCACTAACAACCTGCCAATCAAAGGAGATTGAAAAAGTTGGCTAATCCACCAGCCAATAAACTGAGACTCATTGACGGGAGTAATTTATTCGTTGGGCAAGAGTGAGTGTCCAAGAGTCCAGTCAGGGCTGTTTGCCGGGTTTGTTTAacatatttgatttgattctatttggatctcttttagtccccatttggactaatcttccaagagtccttaaacattaaaatataatttataatacaaacacattTCACATATAACACgctattacaaacatacataatacactaacataatgacccaataaatactcaatctaaaaaatattgattcttcatctactatagtcccacaacatttctatgtattatatttaaatcattttaaaataatgtttaaatttatatattgaaaggtttctggtttgctcagttaatttattaAATTTCTTTATTGCTTTAAATCGAAATTATATTTTGTGGttgacaatctattcctagtatttactgaatgtctgtctcttaccaactgaataacgttgtgaatagaacttggccattttaaattatgtatattATGAATTAACATGTTTAAGCAATAACATGCTTAAAAATAAGCATGTTTTTCTTCAATTATCTtgtcgattgatgaccaaccaagaacatTGCGCAAGactacaacagaagaaccatatctccaccttaaaacaattcttgctgctttgttctgtgcaatctgcagcctcctaacttcCCTTGATGAGGCTtttccccagaccacagaacagtagttcacctgactctcagttaatgcttgtgttttttgctgaataatttttcctggtaaatatttaactatccttctgattatgcatgctgttttaatttttttttttacatagattagttatttgagacgaccatgataagcagttgtctagctgcactcccagtagtttggtttctgccacttcttcaatttgtactcctcccatacttaattgtaCCCCATGCTGTTTTGGCCTTTTCCTAGTGGAACAGACCAGcataactttggttttcttggtgtttaaaacaagttttttttGGCAAACCCACTCCCTAATATTCCCCAAATCTCCTTGTAAAGCTTGCTgcataaattgtagtatcatctgcaaatatagtagcttgagtttcaGCTAAGGCATATGGAAGGTCGTTGGTATATATTAAATAaagaagtggcccaaggcagcagccctgcggtattccacagtttaacacatgaggggaagaaaatgaaccattgatataggtggactgtttcctgtcagttagatatgactgtatattatatataatatatatattaaactaaAGGGATGTTTATTGCACAGTTAAGCATTGATTGAAGTGATCATCTTCTGCCTGACAATAAAGCACTTACTGTGTGGTGGACTGGAGTGAGAGGAGCAGAGGtagaatgtgtgtgagagagagagagagagcgtgatagactaggagaaagagagtgtgtatgAGAGGTGAGTGGATGAAGGTGAATAGGAGGCTATTTCTGTCATGAATATGAGCGTGTTTTAGTACACTTTGGAAACCAGGTACTCAGGGTGTCGCTTTGTAGACCAGTCCACCATGAAATACCAGTAACCTTGATGCCTTAATATAACAGAATCCTAGGTGTATTTGACATCACCCCCTTAACAATCAAATCTAGGCTGCTTTTAAAGAGTTTGTAATGAGTACTTTGTAAATTAGTTTGTGATTTCCTTTCATTATTGTCGATGTAACTGACAATAAACGGGACTCAGAATCAA

Function

NR:

description
phytanoyl-CoA dioxygenase, peroxisomal isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051213 dioxygenase activity molecular_function

KEGG:

id description
K00477 PHYH; phytanoyl-CoA hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563673.2 True 2964 mRNA 0.42 9 55218592 55224435

Neighbor

gene id symbol gene type direction distance location
LOC110490339 LOC106576184 coding upstream 47745 55157706 ~ 55170847 (+)
LOC110490753 LOC106609289 coding upstream 81415 55112600 ~ 55137177 (+)
LOC100272211 socs2 coding upstream 154850 55056852 ~ 55063742 (+)
LOC110490334 LOC106609296 coding upstream 178783 55027671 ~ 55039809 (+)
LOC118938895 NA coding upstream 187675 55023526 ~ 55030917 (+)
LOC110490342 NA coding downstream 15561 55239996 ~ 55243832 (+)
LOC110490343 LOC106576187 coding downstream 27342 55251777 ~ 55260699 (+)
LOC110490345 nudt5 coding downstream 118369 55342804 ~ 55346856 (+)
LOC118938815 NA coding downstream 128319 55352754 ~ 55356008 (+)
LOC110511067 rbm17 coding downstream 151985 55376420 ~ 55382696 (+)
G1308155 NA non-coding upstream 94733 55123401 ~ 55123859 (+)
G1308108 NA non-coding upstream 166724 55051623 ~ 55051868 (+)
G1308107 NA non-coding upstream 169709 55048488 ~ 55048883 (+)
G1308102 NA non-coding upstream 174402 55042052 ~ 55044190 (+)
G1308220 NA non-coding downstream 449 55224884 ~ 55225220 (+)
G1308227 NA non-coding downstream 16579 55241014 ~ 55242480 (+)
G1308238 NA non-coding downstream 38523 55262958 ~ 55278451 (+)
G1308246 NA non-coding downstream 54193 55278628 ~ 55278966 (+)
G1308247 NA non-coding downstream 55262 55279697 ~ 55280057 (+)
LOC110490314 LOC106576157 other upstream 1328201 53875911 ~ 53890829 (+)
G1306708 NA other upstream 1635240 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 1843180 53352462 ~ 53471763 (+)
G1305302 NA other upstream 2705542 52512629 ~ 52513050 (+)
G1308299 LOC106576208 other downstream 123601 55348036 ~ 55349205 (+)
LOC110490357 LOC106609270 other downstream 345583 55569924 ~ 55583925 (+)
G1309147 NA other downstream 792013 56016448 ~ 56016948 (+)
G1309163 LOC100136012 other downstream 812467 56036902 ~ 56037403 (+)

Expression


Co-expression Network