LOC110490755 (mcm10)


Basic Information

Item Value
gene id LOC110490755
gene name mcm10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55228904 ~ 55235465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944664.1
AAGATGAGTGCACAGCAGGCCGAGCTGCAGTCGTCTTTCTCAGGGAAGGTCAAGGGGAAGGGCAAAAGCCTGAAGGAACGACTGTCAGACCGGCTTCCACTATGGAGGCATGTCCTCACCAGCCTGCGCTGCtgcactGGGGGAGATTTTCGGCACAACGCCGGAAAATCTGTGACTAAATCGAGTGCGTCTACTGCGCTGCCCAATCCGGTAGCTCAAATCACCATGGCTACAGCGCGTCCACGGCTCTCGACCATCGCCTCTCcggagtccgtacgggagttgcagtgagttgcagcgatgagacaagactgtaactaccaattgaataccacgaaattggggagaagaagggaagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtagcaaacttcagacgggcctggacatgtactggcttaagcagggagacCCGTCTGGCACTGCGGGAtctgagtccctggcggcgtaatgtgttactgatgTGTAAGTACACATACTTCAAGCCTGCTGAtcgctgtgtggaggagaagcaTGAGCTGCAGTGGCTCGACGCCACCAAATGCTTCTTCAAGGGCCCCTGTGGACAGAGAGCCATCACACTGGACCGCCTGCCACACAAACACTGCAGTAACTGTGTCCTGTTCAAATGGGAAAGAGACGGCATGTTGAAGGAGAAGTCGGGGCCTAAGATAGCTGGGGAGGTGACGAGCAGCCCAAGTTCCTCAACGGCATGCTGTAGTCCTTAGTCACTTACAGTCACCTTCATCATTGTCTTCATCATAGGAAGCGACTGCTGCTGGTGCTATTGGACTTTCTGGTGTATATTTCTCTGCATGTTGTAGAGTGCTTTTTTAAATGTCCttttaatgtttgtttttttactgtggatataattTGAAGCTGATTATGGATTTTAAATTGCTGTGTTTTGAATGGATTCAATTGTATTTCCGAATGAGTTGTTTGTTGTTCCCTCCTGCTGGCTTTGATGGGAATGTGCTGATTAAATCGTGCTGAGTAATTTTA
>XM_036944665.1
GAAGATGAGTGCACAGCAGGCCGAGCTGCAGTCGTCTTTCTCAGGGAAGGTCAAGGGGAAGGGCAAAAGCCTGAAGGAACGACTGTCAGACCGGCTTCCACTATGGAGGCATGTCCTCACCAGCCTGCGCTGCtgcactCTCAAATCACCATGGCTACAGCGCGTCCACGGCTCTCGACCATCGCCTCTCcggagtccgtacgggagttgcagtgagttgcagcgatgagacaagactgtaactaccaattgaataccacgaaattggggagaagaagggaagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtagcaaacttcagacgggcctggacatgtactggcttaagcagggagacCCGTCTGGCACTGCGGGAtctgagtccctggcggcgtaatgtgttactgatgTGTAAGTACACATACTTCAAGCCTGCTGAtcgctgtgtggaggagaagcaTGAGCTGCAGTGGCTCGACGCCACCAAATGCTTCTTCAAGGGCCCCTGTGGACAGAGAGCCATCACACTGGACCGCCTGCCACACAAACACTGCAGTAACTGTGTCCTGTTCAAATGGGAAAGAGACGGCATGTTGAAGGAGAAGTCGGGGCCTAAGATAGCTGGGGAGGTGACGAGCAGCCCAAGTTCCTCAACGGCATGCTGTAGTCCTTAGTCACTTACAGTCACCTTCATCATTGTCTTCATCATAGGAAGCGACTGCTGCTGGTGCTATTGGACTTTCTGGTGTATATTTCTCTGCATGTTGTAGAGTGCTTTTTTAAATGTCCttttaatgtttgtttttttactgtggatataattTGAAGCTGATTATGGATTTTAAATTGCTGTGTTTTGAATGGATTCAATTGTATTTCCGAATGAGTTGTTTGTTGTTCCCTCCTGCTGGCTTTGATGGGAATGTGCTGATTAAATCGTGCTGAGTAATTTTA
>XM_036944663.1
GACCTGTTCAAAACGCAAAGGTCAAAGGACAGCTCACCAGGTCCAGCCCAGCACTACAGCAGCCGCTACAGACACCAGAGGTCCACTGGTGGAGATTAAGACTCACAGCTCCTTCCAGCCAATAGCAAGCAGTAGTAGGACCAACAGCACGGTGACCACGCGTGTCCTCCACGGAGATGGATCGTAAAGATGGCCGACCGCAAGCTGATTCGGCTCTCCCAGTTGCCTTAGCGCCTGGCACGGGAGAAACTGGAGGAGTGTGACTCGGGTCACCTTCGCTGTGCTGGTCAACAAAGCCACACCACAGAGCAACAGCAGTgtGTCTCTGTCAGTAGACCACCATCAGAAGGTGTTGTTGATGGGGGAGGCTCAGGACTATGGCACCTGTAAGGTAGCCAAGAAGAACGGAGACCCCTGCTCTCAGATTGTCAACCTGtatgAGTGCCAGTACCGCCCCAAGGCCCAGTATAAGAAGATGAGTGCACAGCAGGCCGAGCTGCAGTCGTCTTTCTCAGGGAAGGTCAAGGGGAAGGGCAAAAGCCTGAAGGAACGACTGTCAGACCGGCTTCCACTATGGAGGCATGTCCTCACCAGCCTGCGCTGCtgcactTGTAAGTACACATACTTCAAGCCTGCTGAtcgctgtgtggaggagaagcaTGAGCTGCAGTGGCTCGACGCCACCAAATGCTTCTTCAAGGGCCCCTGTGGACAGAGAGCCATCACACTGGACCGCCTGCCACACAAACACTGCAGTAACTGTGTCCTGTTCAAATGGGAAAGAGACGGCATGTTGAAGGAGAAGTCGGGGCCTAAGATAGCTGGGGAGGTGACGAGCAGCCCAAGTTCCTCAACGGCATGCTGTAGTCCTTAGTCACTTACAGTCACCTTCATCATTGTCTTCATCATAGGAAGCGACTGCTGCTGGTGCTATTGGACTTTCTGGTGTATATTTCTCTGCATGTTGTAGAGTGCTTTTTTAAATGTCCttttaatgtttgtttttttactgtggatataattTGAAGCTGATTATGGATTTTAAATTGCTGTGTTTTGAATGGATTCAATTGTATTTCCGAATGAGTTGTTTGTTGTTCCCTCCTGCTGGCTTTGATGGGAATGTGCTGATTAAATCGTGCTGAGTAATTTTA
>XM_036944666.1
ccctggtgaTCTGTGAGAGGAAACGTCTACCACAAATTATTTGGACAGGCGAAATAGTAGCCGCTATTCTATTTGACAGGGGTCCTTCGTTTGGCGCCAGATTTCAGTTCTTTCTCCGTAGTAATTTGAAGAAACGAAGATAGCTACCTAGAGAAGTGTCTGAAACCATCAAATAAGgtgatgATGACAATGACCTTCTAACAGAGCTGCTGGCTGAGAACGAGGCTGGAGAGGAGCAGCAGGCTAGCCAGGAAGCAGAGGACAACCTAGATGACCTGTTTGACAACGATGATGAAGAGTATTGGAGGGGGACGGTGAGGACATCGAGGAAGAGGATGGAGCCGTTGCTCTCTTTGGAGATGCGGATGGcattgaagaggaggaggaagttgAACCACAGCCGTCTGGAGGGAAGGCTCCAGACAACCTCAATAAATCCCAAGACGATTTACAAGAGGAGCTGAGGCAGATGCAGAGGCTGCAGCAGCAGCTAGAGGCCTCCGAGAAGAGGTCTACAGCCACCTCTACCCCAAACAGCATCCCAGGAACAAAGGCACCTTCTAAAGCTAACACTCCCTCACAGAGTCCCCCCAAACAGAGCTCCTCCAAGCCAGTTCGTCCCACACAGAAGACCAAGCAGAGGGAAAGCCCTCGTCTGCCCCAGACCGAGGAGACGGCACCAAGCTACAGGAGTCCTCCGACTTCACCGCTTAGCTCAACAACGCTGACCTGTTCAAAACGCAAAGGTCAAAGGACAGCTCACCAGGTCCAGCCCAGCACTACAGCAGCCGCTACAGACACCAGAGGTCCACTGGTGGAGATTAAGACTCACAGCTCCTTCCAGCCAATAGCAAGCAGTAGTAGGACCAACAGCACGGTGACCACGCGTGTCCTCCACGGAGATGGATCGTAAAGATGGCCGACCGCAAGCTGATTCGGCTCTCCCAGTTGCCTTAGCGCCTGGCACGGGAGAAACTGGAGGAGTGTGACTCGGGTCACCTTCGCTGTGCTGGTCAACAAAGCCACACCACAGAGCAACAGCAGT

Function

symbol description
mcm10 Predicted to enable DNA replication origin binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA replication initiation. Predicted to act upstream of or within DNA replication and cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of replication fork protection complex. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human MCM10 (minichromosome maintenance 10 replication initiation factor).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944664.1 False 1048 mRNA 0.50 6 55228904 55232099
XM_036944665.1 False 973 mRNA 0.49 6 55228904 55232100
XM_036944663.1 False 1154 mRNA 0.51 7 55228904 55233975
XM_036944666.1 True 1045 mRNA 0.53 5 55233413 55235465

Neighbor

gene id symbol gene type direction distance location
LOC110490338 LOC106576183 coding downstream 11527 55170917 ~ 55217377 (-)
LOC110490337 LOC106609287 coding downstream 73551 55148760 ~ 55155353 (-)
LOC110490754 NA coding downstream 81011 55136560 ~ 55147893 (-)
LOC110490752 LOC106609295 coding downstream 175034 55040001 ~ 55053870 (-)
LOC110490333 LOC106576174 coding downstream 211873 54969443 ~ 55017031 (-)
LOC110490341 optn coding upstream 1189 55236654 ~ 55251104 (-)
LOC110490344 LOC106576188 coding upstream 27479 55262938 ~ 55330752 (-)
LOC110490346 LOC106576189 coding upstream 96807 55332272 ~ 55342699 (-)
LOC110490348 LOC100136332 coding upstream 121649 55355672 ~ 55374104 (-)
LOC118938816 NA coding upstream 135545 55371010 ~ 55372484 (-)
G1308637 NA non-coding downstream 72676 55155921 ~ 55156228 (-)
G1308608 NA non-coding downstream 156093 55072592 ~ 55072811 (-)
G1308593 NA non-coding downstream 178583 55050107 ~ 55050321 (-)
G1308592 NA non-coding downstream 182918 55045762 ~ 55045986 (-)
G1308681 NA non-coding upstream 46 55235511 ~ 55235761 (-)
G1308682 NA non-coding upstream 474 55235939 ~ 55236208 (-)
G1308683 NA non-coding upstream 5148 55240613 ~ 55242374 (-)
G1308694 NA non-coding upstream 48907 55284372 ~ 55284684 (-)
G1307901 NA other downstream 460482 54766972 ~ 54768422 (-)
G1307473 NA other downstream 1078364 54150044 ~ 54150540 (-)
G1307309 NA other downstream 1306776 53899310 ~ 53922128 (-)
efcab6 efcab6 other downstream 1471556 53756479 ~ 53786697 (-)
LOC110490757 LOC106576193 other upstream 182858 55417169 ~ 55438953 (-)
G1308831 NA other upstream 320767 55556232 ~ 55556574 (-)
G1308906 NA other upstream 510820 55746285 ~ 55747753 (-)
G1309187 NA other upstream 819026 56054491 ~ 56055064 (-)
G1310261 LOC106609352 other upstream 1736276 56971741 ~ 56973518 (-)

Expression


Co-expression Network