LOC110490342


Basic Information

Item Value
gene id LOC110490342
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55239996 ~ 55243832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490342
TAAGACTCAGAAGCCATGAATGGACCCAATTTCTATATTCTGTTTCTTGCTGGTGTCTTGGTCAACGGGCAAGGCCTCCGATGGGAAAACCAATTTGACCAGCCCTTACCTTTTAACTGCCCTTCAAGACAATCCATCTCTTAGatctatagTCAGCATAACAACGCCTATGAAGACCGTTTGTGGGGCTGAGTGCAAAGACACGTTTGTCTATGAGCCCGAGTGCCACTGGTCTCCCTACATAAATGACTTCGACCAGGAGTTCAGCTTTGAATTCCCCAAAAACTATGTCCTCACCGGGATGAACAGCTATCATTTCAACCGCCATGAGGATAGAAGGTGAGAAGACCTCACCGTTTACCAGATCCTATGTTCAAATAGTAGTTGTTAATTTTTTGTAAATACTTTGAGAGGTTGATTTAGCCTGCTTGGAGTGCCATTTAAGCAtaatttgcacttttgggactattccattgggtCCATCAAATGCAGctgaagtatttgaaagaaaacatatATTTGAATCCAGGTTTGACACAATCCTGACTGTGGACTGCGGTCGAGTCAACAGCTACTgtgatttttgtgtgtgtgtgggggggagggggaagaggttAACAACAACGAGAATGTTTACCTCAAAATGTATTGTGGATTTTCAGAGATCGTCGCTGGAGATTCCAGTACTGCACATGGACATAAAACTGCTGATATTACGGCTGATTATTCCATTCTAGAGTAAAGATTGCCTATTGCCTTCTTTCTTGTGTTTCatttaatatttttttcccaTTGCATATTCATATCAAGCCACTGAGTCAGagtagaagtaaaaaaaaaagttttaattaaaaaaaaaaacattttaagctGCACCTATTTCACTTTATGAAAATATATGCTTGTTAAACTTTTTTGGGAGGGTACTAAGCCTTCATTTAACTACTGGTTTAACAAATAAACTTCCTTCACTGATAGTCACTTTTAAGTTACTGTAGCACTCTAAACTGTTCACACACAGTTCAGTGCAATTAAATTAGAATGTTTGAACCTTTTTCCAAGTGTGAGAACACACAAAACTAGATGGAGCACACACACAACTAgatggagcacacacacacacacacacacaactagatggagcacacacacaactagatggagcacacacacagaaaacctACCTG

Function

NR:

description
Hemagglutinin/amebocyte aggregation factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490342 True 1187 mRNA 0.40 4 55239996 55243832

Neighbor

gene id symbol gene type direction distance location
LOC110490340 pahx coding upstream 15561 55218592 ~ 55224435 (+)
LOC110490339 LOC106576184 coding upstream 69149 55157706 ~ 55170847 (+)
LOC110490753 LOC106609289 coding upstream 102819 55112600 ~ 55137177 (+)
LOC100272211 socs2 coding upstream 176254 55056852 ~ 55063742 (+)
LOC110490334 LOC106609296 coding upstream 200187 55027671 ~ 55039809 (+)
LOC110490343 LOC106576187 coding downstream 7945 55251777 ~ 55260699 (+)
LOC110490345 nudt5 coding downstream 98972 55342804 ~ 55346856 (+)
LOC118938815 NA coding downstream 108922 55352754 ~ 55356008 (+)
LOC110511067 rbm17 coding downstream 132588 55376420 ~ 55382696 (+)
LOC110490350 LOC106576192 coding downstream 140623 55384455 ~ 55394138 (+)
G1308220 NA non-coding upstream 14776 55224884 ~ 55225220 (+)
G1308155 NA non-coding upstream 116137 55123401 ~ 55123859 (+)
G1308108 NA non-coding upstream 188128 55051623 ~ 55051868 (+)
G1308107 NA non-coding upstream 191113 55048488 ~ 55048883 (+)
G1308238 NA non-coding downstream 19126 55262958 ~ 55278451 (+)
G1308246 NA non-coding downstream 34796 55278628 ~ 55278966 (+)
G1308247 NA non-coding downstream 35865 55279697 ~ 55280057 (+)
G1308248 NA non-coding downstream 38403 55282235 ~ 55282650 (+)
G1308249 NA non-coding downstream 40702 55284534 ~ 55284972 (+)
LOC110490314 LOC106576157 other upstream 1349605 53875911 ~ 53890829 (+)
G1306708 NA other upstream 1656644 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 1864584 53352462 ~ 53471763 (+)
G1305302 NA other upstream 2726946 52512629 ~ 52513050 (+)
G1308299 LOC106576208 other downstream 104204 55348036 ~ 55349205 (+)
LOC110490357 LOC106609270 other downstream 326186 55569924 ~ 55583925 (+)
G1309147 NA other downstream 772616 56016448 ~ 56016948 (+)
G1309163 LOC100136012 other downstream 793070 56036902 ~ 56037403 (+)

Expression


Co-expression Network