LOC110490343 (LOC106576187)


Basic Information

Item Value
gene id LOC110490343
gene name LOC106576187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55251777 ~ 55260699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944670.1
gactccgttcaaTGTATCCATTCCAGCCATTTCAATCACCCTATagctccccccaccagcctcctctgggtATGTATGTTTCGCCATATGATATTAAAAAGTTGGCCTACATTATGTCATTGGCTATTTATTAACAATCACATATTATCCGACTAATGCTTACACACATTTGGCCAAGCAAGCATTCCTACTATTATTTGACAAAGACTTTAACGCACAACATAGACAAGAGTACATGCATTTGATTTGCCTAAGAAAGCACACAATGCTTGACGTGTCAAAATGAATAaacaagcaacaacaacaaaagcaaAATAAGGCTTTACGCCCACCGAGCGCATGCCTGCATTCCTCCTCTCCATTACAAATATGTCTTTAATAAGCCTATAAAAACGTTGTTGTAGTAAAACCGGGCGGTTCAATGATTGGCTGTGTAAACTTTGGGTCAGTCTGATTGGTCGGAGAGATCTTTGCGAATGAAGGGGCTCTGAGGAGCCTTCGGGAATGTCTTTGAATGGGACTGGACTTGCGCTGCATCGGGCTAAAAAAAATGCACACTTAAACACGGGGTCATAACATTGGATTATCTGTCTGTGGATATACTTGAAGTTCTCTGTCTTTAACGGAATTAACAGTTGACAAACGTATGCCACTGCTCAAGGAGACCCAGATTAAAAACCGGGAGCAGGTCTGTTTCGCTCTGTGTGTGATCTGTCAAATAGTTTTCATCCAACATTTTACTGGAACCAATGAAGTTTTAACTGACTACAATTCAACGGTACGATAACAGTGCCGTTATCATATGCCCCTATCACTGGATATAAATGAGCTGTActttttattgtaaaaaaaagTAGGATTTATTTATAGAATACGTTTTAACGGATTTGTGCCCTAGAGGAAAAACGAATAACAGGAGTACCCAAAGTGAAAGACAATAATTACGTGCACACCAGACATGATGATCTTTGCGCCCTTGTTTCTCGCTCTTGGCTACATGGCGAGCTTTGCGCACGGGTGCCAACTGCCAAACGAGTGGCGTCCACTGAGTGAGAACTGCCGTGCGGAACTGGCGGAGATCATTGTGTACGCCAAGGTGCTGGCAATTCACCGGGAGCAGTACGGCGGGGCAGAGGGCCTCCACAACTCCCTGCCATTCCCGTACGGGTATGGTTATGAAGGCGCCGAGGAAGGGTTGCTCTACTCCGCAGAGGTGGAGCTCATGTGCGACCAGGCGTGGGGCAGCATGCTGGAGGTGCCGGCGGGCTCGCGCCTCAACCTGACAGGGCTGGGGTACCTGTCGTGCCAGTCTCACACCGTGATGGAGAACTACTCCTACATCTTCTTCCTCCGGATGGATGAGAACTACAACATCCTGCCCCACGGGGTCAACTTCCAGGACGCCATCTTCCCAGACACCTTAGACAACCGCCGTACGTTCTCCAGCCTGTTCCAGTTCTCCAACTGCTCCCACAGCCAACCCCTCCAGACCTTCTCCCCAGAATGGGACCCCCAGGAGGACAGCAGGcTCCTGTGCTCCTCGGTGCAGGGGGCTCTgtttgaggaggaggagaagagcagGAAGCAGCAGGAGCGCCTGGGCcagctggagaggaggaacaAGCAGCTGAAGGAGCGCGTCCGGAAGGTGAAGCGCTCCCTCCGGAACGCCAGGAAGAGCCAGCGCCAAGCGGAGCAGGAGAGGCAAGGGCTGGAGGAGAGGCTGAGGTCAGCGGAGAGACGGGCTGGGCACCACCTCAATTCCATCACACAGGAGGCTACGCCCAGCAGATACCAGGAGACTGTGTTACACCGCACGCCACACACACCGCTTTAGTCTCTAGACGGGATGTTGTTAAAGACTGCTGGGCAGTCTCTCTAATTCCTGTTGTTCACAGGCACGCACGCATgcatccacaaacacacacaatactaatttagtgtcatattcagccatatatactgtagctcctACACATATTACATAGAGAGGGCATCCAGTAGCCCTCGAATAGCAGACAGAGGGAATTAGTATTAGTGAATGactagagagaatgagagagatattgtgtaTAGTTCCTATTAATAGACAGCACTGTCATGCAGCTGATGGCTAGACAGATTAAATGAATTTAGAGTGAGTATATAATGAGAGAATGACTAGAGTGAATGAAGAAAGTGAGGTTACTTTCTGGTAGATGTGTCTGTGGGCATTTGTGCCATGTGTTGTCTGTTGCTGTCCTCGTGCCAACATCACCAAAGAGAATGTCCATGAGGCATTGGGATCATTATATATGAATGTATTACTGAAGCTGCATATAAACTCTAATCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944670.1 True 2333 mRNA 0.48 3 55251777 55260699

Neighbor

gene id symbol gene type direction distance location
LOC110490342 NA coding upstream 7945 55239996 ~ 55243832 (+)
LOC110490340 pahx coding upstream 27342 55218592 ~ 55224435 (+)
LOC110490339 LOC106576184 coding upstream 80930 55157706 ~ 55170847 (+)
LOC110490753 LOC106609289 coding upstream 114600 55112600 ~ 55137177 (+)
LOC100272211 socs2 coding upstream 188035 55056852 ~ 55063742 (+)
LOC110490345 nudt5 coding downstream 82105 55342804 ~ 55346856 (+)
LOC118938815 NA coding downstream 92055 55352754 ~ 55356008 (+)
LOC110511067 rbm17 coding downstream 115721 55376420 ~ 55382696 (+)
LOC110490350 LOC106576192 coding downstream 123756 55384455 ~ 55394138 (+)
LOC110490357 LOC106609270 coding downstream 309225 55569924 ~ 55583925 (+)
G1308227 NA non-coding upstream 9297 55241014 ~ 55242480 (+)
G1308220 NA non-coding upstream 26557 55224884 ~ 55225220 (+)
G1308155 NA non-coding upstream 127918 55123401 ~ 55123859 (+)
G1308108 NA non-coding upstream 199909 55051623 ~ 55051868 (+)
G1308238 NA non-coding downstream 2259 55262958 ~ 55278451 (+)
G1308246 NA non-coding downstream 17929 55278628 ~ 55278966 (+)
G1308247 NA non-coding downstream 18998 55279697 ~ 55280057 (+)
G1308248 NA non-coding downstream 21536 55282235 ~ 55282650 (+)
G1308249 NA non-coding downstream 23835 55284534 ~ 55284972 (+)
LOC110490314 LOC106576157 other upstream 1361386 53875911 ~ 53890829 (+)
G1306708 NA other upstream 1668425 53580541 ~ 53583352 (+)
sox5 LOC106576150 other upstream 1876365 53352462 ~ 53471763 (+)
G1305302 NA other upstream 2738727 52512629 ~ 52513050 (+)
G1308299 LOC106576208 other downstream 87337 55348036 ~ 55349205 (+)
G1309147 NA other downstream 755749 56016448 ~ 56016948 (+)
G1309163 LOC100136012 other downstream 776203 56036902 ~ 56037403 (+)

Expression


Co-expression Network