LOC110490344 (LOC106576188)


Basic Information

Item Value
gene id LOC110490344
gene name LOC106576188
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55262938 ~ 55330752 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944671.1
CGCTGTCAAATCGAGCGATGAGCAGCATTCTAGCCTCCCTCATTGCCATAACAACCGATGGCACAATCAGCATGGTTAGATGAAATAATACTCCTCGGTCCTTGCATTACGCACCACACGGCTCAACAGAGGACTTCATTAAAACGGGAACATtttttggagagagagacaaggcgaTCGCGCAACGGTGACACGTAGACCCAAACCATTTATGTCAAGATAATCTAGACCAGTTGAACCCTGCAGGTGCAACCGCAAACGGTGAAAGCTCATTGTCGGTCAAACGGAACGCTGTAGACAGAAAAAGAAGCGAAGAAAACAGGAGACCTGTTTTAGAGAGCTGCGGAGATATTTCTACAGCGGGAAAGCCACGAGCTTGAAAAGGTTTTCTGCCTAGCTCGTTCTATGCGCGTGGGTCTACTCCCCACGAGCAGGACGTGTAACTCGAAGCGTGGGAAAGCTGCGTTATCGCGGGGGGCTGCTGAGACTCACTGGCATCGTTTGCCCCGGTTTTCCCCTGTTCCACCATGGATCGGGAGAATGGAGAGTCCGGGAAAGGGACGTGGAAAAAGCAAGTCGACGATATCAAGAAAATATTTGAATTGAAAGAGATCCTCGGAACcgGGGCGTTCTCTGAGGTGGTGTTGGCCCAGGAGAGGTCTACAGGGAAGATGTTTGCTGTGAAGTGTATCCCCAAGAAGGCCCTTAAGGGGAAAGAGAGCAGCATCGAGAACGAGATCAACGTGCTCCGCAAAATCAAGCATGAGAACATAGTAGCTTTGGAAGACATCTATGAGAGTTCCAACCACCTCTACCTGATCATGCAGCTAGTGTCGGGAGGTGAGTTGTTTGACCGTATCGTGGAGAAGGGGTTCTACACAGAGAAAGATGCCAGTACGCTCATTAGACAAGTGCTAGACGCTGTCGACTACCTCCACAAGTTGGGCATCGTCCACAGAGACCTGAAGCCAGAGAACCTGCTGTATTTTAACCCCCAGGACGAGTCTAAGATCATGATCAGTGACTTTGGTCTGTCCAagatggagggcagtggggaCGTCATGTCGACCGCGTGCGGCACGCCGGGATACGTGGctccagaGGTTCTTGCTCAGAAGCCCTACAGTAAGGCAGTGGACTGCTGGTCCATCGGAGTCATTGCATACATTCTgtTGTGTGGCTATCCTCCATTCTATGATGAAAATGACTCCAAGCTCTTTGAGCAGATCCTCAAAGCAGACTACGAGTTTGACGCACCGTACTGGGACGACATATCTGATTCAGCCAAAGACTTTATCGGCAGTCTGATGGAGAAAGACCCGGCGAAGCGTTTCACCTGTGACCAGGCCCTCAGACACCCATGgatcGCTGGGGACACAGCCCTCTGCAAGAACATCCACGAGTCTGTGAGCAGACAGATCAGAAAAAACTTTGCTAAGAGCAAATGGAGGcaAGCCTTCAATGCCACTGCAGTGGTGCGACACATGAGGAGACTGCAGTTGAGCAGCAGTATGGGCCACAGCATGGACAGctctcaccctcaccctcctAACAGCCGGGCCGCACAGATGCAGAACCAAAGGAACCAGGCCAACCAGACTCCCAACCAGACCCCTAGCCAGAGCTCTACTCAACCCTCTCCGAGTCCAAGCCAGACTCGGAGCCAGAACCCTAATGCAGCCATTATGAAGAGCTTTTCTGTGGACTCACCTCAAAAGGACTGTGCCCCAGCCACTCCCACCCCCTGCAGCCTGGCATCTGcagcctcctcctccccctccggGGGGACGGAGCTCACCCGGCCCCACCCCTCTACTGTTGCCACGGTACTAACAGAGACTAAGTGACGCCAGGTCCCGCGGGGGACCAGCTGGGAGGCTACGgcgctgtgagagagagagcggagcgAAAACCGCACCCTCCCTTTCCTTACCTTGCCCCTACTACCCCCTCCCAGCCTGCCCCCTGCCCTGCCCCTCCCCCATGCTGCATCTGGGAGGACTGGGAGAGCAGAGGACTCTAAACCCAttacaccaataacaacatgccATACTCACCTTGGACACGCCCATTGTGTCGACTCTGTGGAACCACACCCACTCCGAGAGTATTACTGATTGGTTTACCTTTgagtgtttgtttctgtcagagaCCATGATGAGTGAAGTGGGTGTGTTTTCAAAAGCTTCTGTCGAATTGGGTGTTGTCTATGTCAGTCAAACTCAATTTCCCTCTAGTTTTTCCTACATCTTCTATAAGGTTCTACTTGTGAGTTTTTAAAattctgtttattttctatatttCATCCGCTGGGCTAACAGTTACCAACTGGATTATTTTTCATTTCTATTTTCTTGCGCTTTTTTTCCATGTTCATGTTGATTTCTCTTAGTTTGCGTCCATGTTTAAGACGTGCTTTAAAAGTACCATAAGACTGTTGAGTGATGTTTCATGAGTAAGCGCTTTATCTATTTGCACATGAGGTTTGGACGCGGTTTCAGACGTAGATAATGTGTGTACAGCCACCAAGTTAGACTCTTCATCTACGTGAATTTATCAGACAGAGAATAGAGAATGTAAACTGTAAAATGCCCAAAATGGGGTAAGAGCATTGTACAACATCTTTGTTAAGGGAAACATGCACAATGTTTAATTATTGTCTTACTTTAGAAGACTTTCATAACGACCATCCTATAGGGGacgcatatacagtatattatgaaACGCACTGCAGGTTTAGGATAGAGTTGAAGAGTGCTGTTAGTTTTAACCATCACCAGTTAGTTATATGTGGGGTTTCCCACCCTAAAGATCAGGGGCTACAGGTAGGAAACCAGGCACTTCCAAATGGGCCCCAGAAAAAGTCCATGTAGAAGAGCAGCCATTTCTGTAGTGTCGTGTAAGCATGGGAACCCCTGACCTACAGTATCAGTTTCCCACGATCCAAGATGGTGGAGCTGTTGTCTCTACCCCCATCCCTTTTGCAAAGCCATGACCTCACCACAAGAGCCATCATCATGATGACATCATCAATCGGCACCCAGTACACAAGTTCTCAGGGATTTGGACTGGGCGCCGTGGTGACCCTTGTTGCTATAGAAACCGCTGGAGAGCACAGATTTGTCTACAGAGTGTCCAGTGGTCTGCCTCTGTTAAATGCAAGTCCAACGATCCCTTTGTCATTGTAATGTCTAGCCAAAGCAGTCTTGAAACAGAGAACATGAGGACAAACTGAATTTACCTGATTAAAAACTGATGGTTAGCTATGAGCTAGACCTATAACCCTGGCCGATCCCCACTGAGAAATGGATTGTTTTGAAACTTAAGGGCTGAACTCTGATTATCTGGAGAAAGATGACCGAAGACGAGATGTTTTCGATTTCTCTCCCCCTTGCCTTCTTCTTTCTTCTctgtcccaccctccctccctctctttttctttctagTTTCTTTAAGACCAGTTCACTGTATACTGTAGAAGTTTCACCCAACACTGGGACTGTTACGCTCAAGACACCAGGGTCCCCTAACCAGACAAGGGCCAGACACAGCATGCATATAGCCTACATTTAGGGGTCATAATGCAGTATTATTACCTGGCTTCGTGGTGCTGGGTCAACCATCATTAAGAGTGATGTCATGGACTGGATTCTTTTAGGGGGTGGGTAGACTTTACTTTAGGGGtctgtttttgtttatttatttattttttattgaggCAAGCATTTTGTTTTCTGATATGAATGAATATATTTGTTGGAAACGTCTTGTAAATAAATTGTGAATATGAATGATAATTTTTAAGATAACCTTAGCGAATGTTGTGCAGTGCCggcgtgtgtgtggggggggttgaTTGTATTTTCTTTGGAATGTTTAATGTGTTTTAAATGAGCTACAGCACCCCTCCATCCCACACAATACTGGGCTTTGATACCACAATATTCAGAGCATACTGTACCAAACACTCAGTAACTGCCATCTACAGAGTTACCATGGAGATAACGCCATCAGCATTCTAAACAATATCTGatcaaaaaaaaaataattgtaaaaGTAAACTCAGGCTTTAGTTTGCAATGTGTGTAAACGTTGAAGCTTTGACTGATACGACATCCACTGTTATGGAGctgagctgttttttttttacacgtaTCTGCCTAAGTCATCGGTCGTCCACTTTGCCCCCTTGCTCACTGACACTACGGCAACAGGCATCACAACACACCTAAACACATGCCCATGATCAACTgtcatgagaaaaaaaaatcccacaATGCATCACAAGGTTTTTCTGAAGATGAAATGCAAAGCATGTTGAAAAGTGCTTAAAGAAATCCACCTCCACAACTGTTTGCATTAACTTGATATGCCATTGAATGATGTTTGTATCTATATCTAAAGAAGAAGATCAATGTGTCCATAGAGAGCAGAGTATTGTTGGGGACCACTGCATCTCCCTGTGGGTTCCTGTGAGGTCCAGAGCCCGGGGAATGGGCCTTATTTACTCTGCATGTGACCAAAACAAACGTCCATCTTGTGTGGCGGTCTCTCACTAACGACTCCTGGTAGATGTTCCctttaaccacagatctaggatcagaaaACTCTCCCTTAATCTAAACCTTAACCGTTTGATATAAACATAAACATAGATCATAAAAATATCCTCCCTAAATCTGAACCTTAATCAATAGATACTTACAACCGTAGATCTAGGATCAGAATACCCTCCTTTGATCTGAACCTAAGCCATTAGGGGGATGAGAAAATATCTGACCTTGTATCAGTGGTAAGGGGCAACTTTCGTCCTACTTCGTTAAGCAGACACCTCCTTCCATTTTGTGTGGCAGAGTGAGTTGCCCTGCCACTCTTACTGTGCTGTGATGACCTTCTGTTATGGGGCTTGTATATCCGATGCCTTCGACAATCATGTGCACATATCACTTACCATGACGATGACAGAAGCCAGAATGACTgagttgtttttttctctcctgaAATAAATCCTGAACGATCATA
>TU1493008
CCTGCCCCTCCCCCATGCTGCATCTGGGAGGACTGGGAGAGCAGAGGACTCTAAACCCAttacaccaataacaacatgccATACTCACCTTGGACACGCCCATTGTGTCGACTCTGTGTTTTCAAAAGCTTCTGTCGAATTGGGTGTTGTCTATGTCAGTCAAACTCAATTTCCCTCTAGTTTTTCCTACATCTTCTATAAGGTTCTACTTGTGAGTTTTTAAAattctgtttattttctatatttCATCCGCTGGGCTAACAGTTACCAACTGGATTATTTTTCATTTCTATTTTCTTGCGCTTTTTTTCCATGTTCATGTTGATTTCTCTTAGTTTGCGTCCATGTTTAAGACGTGCTTTAAAAGTACCATAAGACTGTTGAGTGATGTTTCATGAGTAAGCGCTTTATCTATTTGCACATGAGGTTTGGACGCGGTTTCAGACGTAGATAATGTGTGTACAGCCACCAAGTTAGACTCTTCATCTACGTGAATTTATCAGACAGAGAATAGAGAATGTAAACTGTAAAATGCCCAAAATGGGGTAAGAGCATTGTACAACATCTTTGTTAAGGGAAACATGCACAATGTTTAATTATTGTCTTACTTTAGAAGACTTTCATAACGACCATCCTATAGGGGacgcatatacagtatattatgaaACGCACTGCAGGTTTAGGATAGAGTTGAAGAGTGCTGTTAGTTTTAACCATCACCAGTTAGTTATATGTGGGGTTTCCCACCCTAAAGATCAGGGGCTACAGGTAGGAAACCAGGCACTTCCAAATGGGCCCCAGAAAAAGTCCATGTAGAAGAGCAGCCATTTCTGTAGTGTCGTGTAAGCATGGGAACCCCTGACCTACAGTATCAGTTTCCCACGATCCAAGATGGTGGAGCTGTTGTCTCTACCCCCATCCCTTTTGCAAAGCCATGACCTCACCACAAGAGCCATCATCATGATGACATCATCAATCGGCACCCAGTACACAAGTTCTCAGGGATTTGGACTGGGCGCCGTGGTGACCCTTGTTGCTATAGAAACCGCTGGAGAGCACAGATTTGTCTACAGAGTGTCCAGTGGTCTGCCTCTGTTAAATGCAAGTCCAACGATCCCTTTGTCATTGTAATGTCTAGCCAAAGCAGTCTTGAAACAGAGAACATGAGGACAAACTGAATTTACCTGATTAAAAACTGATGGTTAGCTATGAGCTAGACCTATAACCCTGGCCGATCCCCACTGAGAAATGGATTGTTTTGAAACTTAAGGGCTGAACTCTGATTATCTGGAGAAAGATGACCGAAGACGAGATGTTTTCGATTTCTCTCCCCCTTGCCTTCTTCTTTCTTCTctgtcccaccctccctccctctctttttctttctagTTTCTTTAAGACCAGTTCACTGTATACTGTAGAAGTTTCACCCAACACTGGGACTGTTACGCTCAAGACACCAGGGTCCCCTAACCAGACAAGGGCCAGACACAGCATGCATATAGCCTACATTTAGGGGTCATAATGCAGTATTATTACCTGGCTTCGTGGTGCTGGGTCAACCATCATTAAGAGTGATGTCATGGACTGGATTCTTTTAGGGGGTGGGTAGACTTTACTTTAGGGGtctgtttttgtttatttatttattttttattgaggCAAGCATTTTGTTTTCTGATATGAATGAATATATTTGTTGGAAACGTCTTGTAAATAAATTGTGAATATGAATGATAATTTTTAAGATAACCTTAGCGAATGTTGTGCAGTGCCggcgtgtgtgtggggggggttgaTTGTATTTTCTTTGGAATGTTTAATGTGTTTTAAATGAGCTACAGCACCCCTCCATCCCACACAATACTGGGCTTTGATACCACAATATTCAGAGCATACTGTACCAAACACTCAGTAACTGCCATCTACAGAGTTACCATGGAGATAACGCCATCAGCATTCTAAACAATATCTGatcaaaaaaaaaataattgtaaaaGTAAACTCAGGCTTTAGTTTGCAATGTGTGTAAACGTTGAAGCTTTGACTGATACGACATCCACTGTTATGGAGctgagctgttttttttttacacgtaTCTGCCTAAGTCATCGGTCGTCCACTTTGCCCCCTTGATCACAACACACCTAAACACATGCCCATGATCAACTgtcatgagaaaaaaaaatcccacaATGCATCACAAGGTTTTTCTGAAGATGAAATGCAAAGCATGTTGAAAAGTGCTTAAAGAAATCCACCTCCACAACTGTTTGCATTAACTTGATATGCCATTGAATGATGTTTGTATCTATATCTAAAGAAGAAGATCAATGTGTCCATAGAGAGCAGAGTATTGTTGGGGACCACTGCATCTCCCTGTGGGTTCCTGTGAGGTCCAGAGCCCGGGGAATGGGCCTTATTTACTCTGCATGTGACCAAAACAAACGTCCATCTTGTGTGGCGGTCTCTCACTAACGACTCCTGGTAGATGTTCCctttaaccacagatctaggatcagaaaACTCTCCCTTAATCTAAACCTTAACCGTTTGATATAAACATAAACATAGATCATAAAAATATCCTCCCTAAATCTGAACCTTAATCAATAGATACTTACAACCGTAGATCTAGGATCAGAATACCCTCCTTTGATCTGAACCTAAGCCATTAGGGGGATGAGAAAATATCTGACCTTGTATCAGTGGTAAGGGGCAACTTTCGTCCTACTTCGTTAAGCAGACACCTCCTTCCATTTTGTGTGGCAGAGTGAGTTGCCCTGCCACTCTTACTGTGCTGTGATGACCTTCTGTTATGGGGCTTGTATATCCGATGCCTTCGACAATCATGTGCACATATCACTTACCATGACGATGACAGAAGCCAGAATGACTgagttgtttttttctctcctgaAATAAATCCTGAACGATCATAAAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944671.1 False 5022 mRNA 0.47 11 55262944 55330752
TU1493008 True 2947 lncRNA 0.42 3 55262938 55265996

Neighbor

gene id symbol gene type direction distance location
LOC110490341 optn coding downstream 11840 55236654 ~ 55251104 (-)
LOC110490755 mcm10 coding downstream 27479 55228904 ~ 55235465 (-)
LOC110490338 LOC106576183 coding downstream 45567 55170917 ~ 55217377 (-)
LOC110490337 LOC106609287 coding downstream 107591 55148760 ~ 55155353 (-)
LOC110490754 NA coding downstream 115051 55136560 ~ 55147893 (-)
LOC110490346 LOC106576189 coding upstream 1520 55332272 ~ 55342699 (-)
LOC110490348 LOC100136332 coding upstream 26362 55355672 ~ 55374104 (-)
LOC118938816 NA coding upstream 40258 55371010 ~ 55372484 (-)
LOC110490757 LOC106576193 coding upstream 86417 55417169 ~ 55438953 (-)
LOC110490351 LOC106576194 coding upstream 129598 55460350 ~ 55566110 (-)
G1308683 NA non-coding downstream 20570 55240613 ~ 55242374 (-)
G1308682 NA non-coding downstream 26736 55235939 ~ 55236208 (-)
G1308681 NA non-coding downstream 27183 55235511 ~ 55235761 (-)
G1308637 NA non-coding downstream 106716 55155921 ~ 55156228 (-)
G1308734 NA non-coding upstream 393 55331145 ~ 55331370 (-)
G1308738 NA non-coding upstream 8974 55339726 ~ 55340265 (-)
G1308744 NA non-coding upstream 22882 55353634 ~ 55355247 (-)
G1308746 NA non-coding upstream 27332 55358084 ~ 55358408 (-)
G1307901 NA other downstream 494522 54766972 ~ 54768422 (-)
G1307473 NA other downstream 1112404 54150044 ~ 54150540 (-)
G1307309 NA other downstream 1340816 53899310 ~ 53922128 (-)
efcab6 efcab6 other downstream 1505596 53756479 ~ 53786697 (-)
G1308831 NA other upstream 225480 55556232 ~ 55556574 (-)
G1308906 NA other upstream 415533 55746285 ~ 55747753 (-)
G1309187 NA other upstream 723739 56054491 ~ 56055064 (-)
G1310261 LOC106609352 other upstream 1640989 56971741 ~ 56973518 (-)
G1308694 NA non-coding upstream 18376 55284372 ~ 55284684 (-)
G1308696 NA non-coding upstream 19963 55285959 ~ 55286271 (-)
G1308699 NA non-coding upstream 27252 55293248 ~ 55293447 (-)
G1308704 NA non-coding upstream 32036 55298032 ~ 55298263 (-)
G1308705 NA non-coding upstream 32360 55298356 ~ 55298687 (-)

Expression


Co-expression Network