LOC118938815


Basic Information

Item Value
gene id LOC118938815
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55352754 ~ 55356008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036131.1
AATTCCATGAACTGTCATTGTGTCCTTATCATCCATTGTGCTCTGTGTACATACCTAGATTGCAGTGTTACTGTAATTCCAAAAGTGTACATTCAGATTTgattttattttgtatattttttttatttaggcTGCTGATTTTGAGATTTGGTCAGAAATTtcaactagcaagcaagtcgcagcaTTGAAGAACGCGAAGGGGGGGACAATTCTGCCGGGGAGATTTAAGGCACAACACCGGTAAACAGCGGTTGTAGTTCACTGCCGCCACCACCAGGCTGTTCCATTCTTGACATCAAAGATGCAATATATTGTTGGTATGAGTTTTTGATCAATGTAATTCAAATGGAGAAAATAGTGTGTGTATACATTTTTGCATAAAGACCGTTTTAGATGGAATATCATCATTCTACATTGTTAGATTTGTGGAAATATATAGTGCAACCTgccctttagtgtgtgtgtccatccacAGGCTGTGTGCAGGGTAAGGCTGTGGACTTGCTGTGTCCCCTGGGGTTGAGTCCTGGCCGGGGAAAGTTAGCAGTACTGTCTTGCTCTAACATCTCCGTGTTCGACCAAGCTGTCAGACTCACCGACACCAACCCCCGCTGTAGGCTGCACATCGTAGGGGGGGTGAAGAATTTTGGGCTGAACAGAATCATGGGCATTTGGGTTCTGATGCAGCCAGAAAACAACCGCTCCTGAGtcatcaAGGACAGATTCATCCGTAGGTTCACCCAGCAGAGTTATGCTAAAAAAACAGAGGACCGTGAGTTGGAGGGCAAACTCTCCATGGTGGAGAAATACAACAGCCACATCCCTGAGCTGGTGGAACGCCTCTACggctgcacagagagagaggcccaacacgcagATGTTATCCTGGGGACAGTCCATAAGTCAAAAGGTCTGGAGTTTGACATGGTGGTGATCACTGATGATTTTGCTAAGGTCCCCTGTCCCCAGACTTTCCAGCTGCtcaggagctgtgtgtgtgtgcaatcatTAGGAAGTTGGGAAACCATATCCAAATACCAACTATGATCTAAGGCCAATGACTGTTTGCATTGGTCCACGGCCTACGCCCAATCAGAACATTGGTTGATGTATTACAGTCCAGATTATAGTACCAATGTTTGCTAGTGGCTGACTCCACTGTTTTCTCCCTCGTCCTCGGGGTGACATCCCAGACGATGAGTGGAACCTGCTGTATGTGGCAGTGACACAGGCCAAGAGCTCTCTGGTCATCACCAAGAACATCCTCACACTGGCTGGGGTGAGAGCACTGATCACTGGAGGCTGGTGagtggaggacggctcataataatgtctggaatggagtgtaatggaatggtttcaaacacctggaaaccatgtttgaTTCCATTCAGGCCatttattatgagtcgtcctcccctcagcagcctccactggcacGGAACCTCTCCACTACACTCCATCCCTCttcacttgtctctctctctctattcttccactccaccccctctacccctccatcactCTAACACACTCCTTCGCTATACTTAACTCCTATTCCcagtctctttctttcttttatgTGTGTTCTTTCTCAAACACCATCTCAGATCACAGAGAAATGTACAAGTTGTTCATTGAAGCAGGAAGTTGTGGTAATGTAATTCTGAGAAAGCCTCATTCCTCTTTGGGTGACATTTATGTGACGCAAATGAGCACGTCACTGTGCAAGTGAATGTGTTCCAATTTAATTTGTGTTCTGTGAAAGCCTCCTCCTATAGCCTGGTGGTCTAGTCTGTGTTGTTAGCCAACCCTCTGTGTGTATGGCTTGACAGTGATTGGAAAGTAGAAAACACTACAGCACGTACAGTATGGGACCAAGGCTCAAAAAGCTTCtcagagcaggagtgctgatctagggccAGGTCCACCTGTCCATATCATTCTTTTCCGTGTGAGCTAAAAtgccaaactgatcctagaacagcactcTTTGTGAGTCCGGGACCAGGCTAACTCCTCCCATGGTTAAGAAGAATCCttgtgtcagctaaagacttgaagaaatctctggaacatgctaacatctctgttgatgagtacgatacataaaacactaaacaagaatgggaGGACATGGTAGCTACTTtacagaatctcaaatataaaatatattttgatttgattaacactatGGATTTGATTAACACTAttttatgattccatatgtgttatttcatagttttgatgtcttcactattattctacaatgtagaaaatagtaaaaagaaagaaaccctgtaatgagtaggtgtgaacATTTTTGGCTGGTAATGTATAAACAAGGAATAAACTTATGTATAAACAAGGAAATGTAAGTTAAAACGTTTAAAAATAAATTGGTAACAATGCAGATGTCTTCTGTTTGGGAGTGACAGACAATTTAGTGATTAATACGAGGTGCAATGCTGTGTCTTATAATAACATCTAATTAATTTAATAACGTTTAATTCACAAAGTAAGGCCTTGGTTGTGTTTTGATAGATATCACCATAATCATGGACAGAAAGCAACAGTTGGGTTTCTATGGTCTTTGTAATGGATACAGTAAAACAATTGTTAGATCTGTATAGTAACCCAAGTTATACAGTTCATTTGGAAATGATTCActtcacttattccacatttttttgatttaggttacagacttattctaaaatggataaaacaaatcttttcccctcatcaatctacacacaaaggaaaaacaggt
>TU1492493
ACTTAACTCCTATTCCcagtctctttctttcttttatgTGTGTTCTTTCTCAAACACCATCTCAGATCACAGAGAAATGTACAAGTTGTTCATTGAAGCAGGAAGTTGTGGTAATGTAATTCTGAGAAAGCCTCATTCCTCTTTGGGTGACATTTATGTGACGCAAATGAGCACGTCACTGTGCAAGTGAATGTGTTCCAATTTAATTTGTGTTCTGTGAAAGCCTCCTCCTATAGCCTGGTGGTCTAGTCTGTGTTGTTAGCCAACCCTCTGTGTGTATGGCTTGACAGTGATTGGAAAGTAGAAAACACTACAGCACGTACAGTATGGGACCAAGGCTCAAAAAGCTTCtcagagcaggagtgctgatctagggccAGGTCCACCTGTCCATATCATTCTTTTCCGTGTGAGCTAAAAtgccaaactgatcctagaacagcactcTTTGTGAGTCCGGGACCAGGCTAACTCCTCCCATGGTTAAGAAGAA
>TU1492494
CGTTTAATTCACAAAGTAAGGCCTTGGTTGTGTTTTGATAGATATCACCATAATCATGGACAGAAAGCAACAGTTGGGTTTCTATGGTCTTTGTAATGGATACAGTAAAACAATTGTTAGATCTGTATAGTAACCCAAGTTATACAGTTCATTTGGAAATGATTCActtcacttattccacatttttttgatttaggttacagacttattctaaaatggataaaacaaatcttttcccctcatcaatctacacacaaaggaaaaacag

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036131.1 False 2773 mRNA 0.42 4 55352754 55356008
TU1492493 False 493 lncRNA 0.44 1 55354781 55355273
TU1492494 True 268 lncRNA 0.32 1 55355739 55356006

Neighbor

gene id symbol gene type direction distance location
LOC110490345 nudt5 coding upstream 5898 55342804 ~ 55346856 (+)
LOC110490343 LOC106576187 coding upstream 92055 55251777 ~ 55260699 (+)
LOC110490342 NA coding upstream 108922 55239996 ~ 55243832 (+)
LOC110490340 pahx coding upstream 128319 55218592 ~ 55224435 (+)
LOC110490339 LOC106576184 coding upstream 181907 55157706 ~ 55170847 (+)
LOC110511067 rbm17 coding downstream 20412 55376420 ~ 55382696 (+)
LOC110490350 LOC106576192 coding downstream 28447 55384455 ~ 55394138 (+)
LOC110490357 LOC106609270 coding downstream 213916 55569924 ~ 55583925 (+)
LOC110490758 LOC106576198 coding downstream 249009 55605017 ~ 55617741 (+)
LOC110490356 LOC106576202 coding downstream 267661 55623669 ~ 55629283 (+)
G1308231 NA non-coding upstream 4927 55347457 ~ 55347827 (+)
G1308292 NA non-coding upstream 21120 55331418 ~ 55331634 (+)
G1308291 NA non-coding upstream 22043 55330138 ~ 55330711 (+)
G1308281 NA non-coding upstream 36142 55316317 ~ 55316612 (+)
G1308277 NA non-coding upstream 40118 55312421 ~ 55312636 (+)
G1308305 NA non-coding downstream 5760 55361768 ~ 55362148 (+)
G1308306 NA non-coding downstream 7561 55363569 ~ 55364473 (+)
G1308308 NA non-coding downstream 12979 55368987 ~ 55369290 (+)
G1308313 LOC106576191 non-coding downstream 17076 55373084 ~ 55373840 (+)
G1308316 NA non-coding downstream 19768 55375776 ~ 55375995 (+)
G1308299 LOC106576208 other upstream 3549 55348036 ~ 55349205 (+)
G1308238 NA other upstream 86478 55262958 ~ 55278451 (+)
LOC110490314 LOC106576157 other upstream 1462363 53875911 ~ 53890829 (+)
G1306708 NA other upstream 1769402 53580541 ~ 53583352 (+)
G1309147 NA other downstream 660440 56016448 ~ 56016948 (+)
G1309163 LOC100136012 other downstream 680894 56036902 ~ 56037403 (+)
G1309787 NA other downstream 1556323 56912331 ~ 56914223 (+)
G1310321 gdib other downstream 1683791 57039799 ~ 57050944 (+)

Expression


Co-expression Network