LOC110490758 (LOC106576198)


Basic Information

Item Value
gene id LOC110490758
gene name LOC106576198
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55605017 ~ 55617741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944691.1
ATTATGATCacatagagagaggaaacaactGCTACAGCATGCCAGCGTTTAAATCTGTACATACCAGCATTGGAAACCCAGTTCTGATTGTCTGGGCGTGTTGCAGAGTTTAGGCCTACATAAATCAACGAGAAATCCAGCCGTAAACCGAACCTGTATGATCCCAAATATGCTGTGTTTACCCTCCTACACGGCAGGTCAAGCTTCAAAGTTTCCCTCTCCGGGTTACGTGAAACACAACAAATATTGACTAGGGCCAAGCGTCTATCAGCACTCGGTGGATTTTTAACCCTTATTTTTGGGATCTCTCTGCTGCCTCTTGGGTCCCGGCTGAAGGACTATATCTGGGAGTGTTAAACCTCAGGCAACACATACAGGCCTGGAACCATGAGACGCCTGGCTCTCCTCCTAGGCCTGCTGGCCCTACACCAGACCCTCTGCTTTGAGTTTGTGGTCGAGGGCGAGTGGGAGACGGAAACGTCATTAGAGAAACAACATGGACGATTTAAGAGGGCGATATTGACCAGTGAGGAGCAAGAAGACTTTGAGGCCATCCGGGGTGATGACATCACGGTTAAGAGCTACAGGGTGGAGAGCCGCATCACGTCGCGGTTCTGCCACACCACGGTCAAGAGCTCTGTGGTCAACTCTGGTCCAAATGCCCAGAGCATTGGCTTCAACGTCCAGATCCCCAAACGAGCCTTCATCACCAACTTCACCATGAATGTGAATGGGATCATGTTTGTGGGCTCAGTGAAGGAGAAGACTGTGGCTAGGAACCTCTACGCTCAGGCTAGAGCCAGAGGGAAGGCCGCAGGCCTCGTCAGGGCTAACTCCCAGGACATGGAGACCTTTAAGACGGAGGTCCACGTACCTCCCGGCAGTAAGATAGAGTTTGAGTTGCACTACCAGGAAATGATGCAGAGGAAGCTGGGCTTCTATGAACACTCACTATACCTGCAGCCTGGACGCCTGGTGCCCCAGTTCCAGgTGGATGTGTATATCTATGAGCCCAACGGCATCGCCTCTGTGGAGACACCGAACACCTTGGGAGAGCATTTCAGCGGCATGGCCAAACTCACCTCCTCAAAGGACAAGGCTCACGTGGTGTTCAAGCCCTCGCTCCAGCAGCAGAGGAAGTGCGAGAACTGCACCACCAGCGCTATCGATGGCATCTTTACCGTCAAATACGACGTCCTGAGAGACAGCAATGCCGGGGAACTACATGTTTCTGACGGGCATTTTGTGCATTTCTTCGCCCCGGCCAATCTCTCCCCCCTCCCGAAAAACATTGTGTTCGTCATTGACGTCAGTGGATCTATGTGGGGAGTCAAGATGAAGCAGactgtggAGGCTATGCAGACCATATTGGATGACCTGACCATGGATGACTACTTCAGCATTGTTGACTTCAACCACAATGTGCGCTGCTGGAGTGAGGAGCTGGTTCAAGGCAGCACCATACAGGTGGCTGAGGCCAAGAAATACATCCAGAACATCAAACCCAatggagGCACCAATATCAATGAGGCATTGATGAGGGCGGTGCAGATGCTGGTGAAGGCGTCCAATCAGGGCATGATCGACCCACGCTCTGTCTCCATGATCATGCTGGTGTCTGATGGAGACCCCACTGTCGgaGAGATCAAGCTCAGCGCCATCCAGAAGAATGTGAAGAAGGTCATGAGGGAGgagttctctctcttctcattgGGCATCGGCTTCGATGTCGACTACGACTTCCTGGAACGCATCGCCATGGAGAATAGGGGCGTGGCCCAGAGGATCTACACCAGCCACGACGCCTCAGATCAGATACGGCGGTTCTACAGCCAGGTCTCGTCTCCCCTCCTGAGGAAGATCACGGTTCAGTTCCCAGAGGACTCTGTCTCTGACGTCACCCAGAACCACTTTGACAAGTACTTCAGTGGCTCAGAGCTGGTGGTGGCTGGGAAGGTGCTGCCCTCTGAGTCCACTACTCTTAACAGCTTCACCACCGCATTCGCTGATCGTCTGGACCTGTCCCTACAGACTGAAGCAGACTACCTGGAGCTAGACGCTGCGCTGGCCCAGCAGCAGCATGCCTTCACTGGCTTCGCCAGACAGATGTGGGCCTACATCACTGTCAACCAGCTACTGGccgagagGTCCCTGGCCCCCACTGCTGGTAAGAAGAGGAAGATCACACAGAGGATCCTGAACCTGGCTGTGGAGCACCAGTTTGTCACGCCCCTCACTGCCCTACTGGTGGAGAGTGAGGAGGCCAAGGAGAGGCTGCTCGCTGACTCCCCTAGGGACCCCAAACAGGGCTGCTGTGCAGgaggatCTGGTATGGCTGGTCCCGGACAAAGGACTCCAATGCAGATAGTTCACAGCCTCCCCCCCTGGGTCCGGATGACCACACCTGCCCCCCCTAGCCACGCCGAGAGGCCCCTACCAGATCACATCACCATAGTGGAAAACGACCCTCACTTCATTGTCCACCTGCCTAAAAACAACATGGACGTCTGCTTCAACATCGACTCAGAGCCTGGACACATCCTCAATCTGGTGTCAGACCCCGGTgcagGTGTGGTGGTGAATGGCCAGCTGGTTGGCTCTaagagggtggaggagaaggagaaggtgaACACGTACTTTGGCACCATATCAGTGTTCTACCAGCCTGACGGCATCAGGGTGTCAGTCACCACCGACCGTATCGACCTGACTGACGGCATGAACAACCACTCCTTCACCTGGGGAGCCACGGCCGACATCACCCAGGACAGGGTTAAGGTTTCCATAGTGAAGGACTCCAAGGTGATGGTGACGGTGGATGACAAGATCACTGTGATGGTGCTGCTACATCGTGTGTGGAAGAAACACCCAACCCACGTGGACTTCCTGGGCCTCTATATCCCCAACAACAACCAGTACTCCTCTCAGGCCCACGGCCTTATTGgtcagttTGGCCAGGAGCCAGAGGTGAGGGTGTTTAACCTGCACCAGGGAGCTGACCCTCTGAAGAAGGAGGCCACCATGGAGGTGAAGGGCAACAAGCTGGTCGTCACCAGGGGCTGGCAGAAGGACTACAGGCGGGATAAGAAACGTGGATCTGACGTTTTCTGCTGGTTCATCCACAACAGTGGCAAAGGCTTCATCGACGGCCATTACACCAACTACATCGTCCCGCGACTTGACAGCTTCCTGCCGCTCCCGCTCTGAGCGACCAATCGCAAGGCACACGGGGCTACCATGTAACCCAGGCAGCAAGAGACAAGGCATAGTTATAATGGATATCCTAGTCCACAggtacaggagacacacacattTTCAGCCAATTTGACTAGACACATGTGTTATTACCGGTTTTCATATCACAGCTCTGTCTGACAACTCTCGCTCTTTACAACAGGTTATAAAAAAGCAGTATCAGTATGTATAGCTGTGTGAATGTTTCTTTATTTTCATGAAGACTACACTGTCGGCTTTGAActttatgtacacacacacacacagacttcttAACCAGAACATTCCAATGACTGTTGTATTTCTCAGACCTCATTTTACATGGCAAAATACAAATGTTTTTCAATCAATACATAG

Function

NR:

description
PREDICTED: inter-alpha-trypsin inhibitor heavy chain H2-like

GO: NA

KEGG:

id description
K19015 ITIH2, SHAP; inter-alpha-trypsin inhibitor heavy chain H2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944691.1 True 3591 mRNA 0.53 20 55605017 55617741

Neighbor

gene id symbol gene type direction distance location
LOC110490357 LOC106609270 coding upstream 21092 55569924 ~ 55583925 (+)
LOC110490350 LOC106576192 coding upstream 210879 55384455 ~ 55394138 (+)
LOC110511067 rbm17 coding upstream 222321 55376420 ~ 55382696 (+)
LOC118938815 NA coding upstream 249009 55352754 ~ 55356008 (+)
LOC110490345 nudt5 coding upstream 258161 55342804 ~ 55346856 (+)
LOC110490356 LOC106576202 coding downstream 5928 55623669 ~ 55629283 (+)
gata3 LOC106576211 coding downstream 111993 55729734 ~ 55747813 (+)
LOC110490359 LOC106576215 coding downstream 681565 56299306 ~ 56546327 (+)
LOC110490363 LOC106576214 coding downstream 942435 56560176 ~ 56651572 (+)
LOC110490759 LOC106609341 coding downstream 1040590 56658331 ~ 56703173 (+)
G1308426 NA non-coding upstream 362 55602745 ~ 55604655 (+)
G1308407 NA non-coding upstream 35264 55569477 ~ 55569753 (+)
G1308392 LOC106576194 non-coding upstream 50692 55554012 ~ 55554325 (+)
G1308383 NA non-coding upstream 73211 55513419 ~ 55531806 (+)
G1308430 NA non-coding downstream 11823 55629564 ~ 55629840 (+)
G1308434 NA non-coding downstream 17722 55635463 ~ 55636445 (+)
G1308435 NA non-coding downstream 19988 55637729 ~ 55638209 (+)
G1308437 NA non-coding downstream 21007 55638748 ~ 55639039 (+)
G1308460 NA non-coding downstream 56841 55674582 ~ 55676779 (+)
G1308299 LOC106576208 other upstream 255812 55348036 ~ 55349205 (+)
G1308238 NA other upstream 338741 55262958 ~ 55278451 (+)
LOC110490339 LOC106576184 other upstream 437854 55157706 ~ 55170847 (+)
LOC110490314 LOC106576157 other upstream 1714626 53875911 ~ 53890829 (+)
G1309147 NA other downstream 398707 56016448 ~ 56016948 (+)
G1309163 LOC100136012 other downstream 419161 56036902 ~ 56037403 (+)
G1309787 NA other downstream 1294590 56912331 ~ 56914223 (+)
G1310321 gdib other downstream 1422058 57039799 ~ 57050944 (+)
LOC100136741 LOC100136741 other downstream 2496409 58102240 ~ 58136639 (+)

Expression


Co-expression Network