LOC110490364 (LOC106576219)


Basic Information

Item Value
gene id LOC110490364
gene name LOC106576219
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 56726311 ~ 56730594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563713.2
TGATTCTAGGAAGAGTAATGTAAAAGCTGTATTGACTTTAGTCCTGCTATTTTCAGTACTGTTTTAATCAATATGAACAGTTCCATCTTCAGCCATGTAAAGGGTTAACTGTTCCAGGAAGAGAATCACACAGCAGTATCTGGTGGGGAGGAGCATTATTGGCGTCAACTTGCTGAACTGAAACTAAAGTAGAGACACAGTATATTGTGTACGAGACCAAACTCTCCAGCACTTCAGAAATCTATTAAACAGCAATACGTTCAGACTATACTCTGACTCTCCTAGCCGTTGACACCACAAACAGGAAGGACAGAGATATTATCCAACGAAAACATACAGATATGACCACCTCCAGCAGTCTCCTGTCTGAAGAGCAGTTCCTGTGTTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCTCTATTCCATGTGGACACAACTTCTGCAAGTCCTGTATCAGGGGATACTGGGATACCAGTGACCTGTGCCAGTGTCCAATGTGTAAAAAAACCTTTGATAAGAGACCAGATCTGTTTGTCAATACTTTCATTTCTGAGATGGCTGCTCAGTTCAGGCAGACAGTTGAAGTGAAAGCTACCAGCAGCCCAGACCAATGCCCTGACATAATTGTAGAAGTGTCCTGTGACATCTGTACTGGGATGAAGGTCAAGGCCCTGAAGTCCTGTCTGGTGTGTCAGAcctcttactgtgagactcacctGGAGCCTCATCAGAGAGTCCCAGCCTTAAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGGAAGAAAGGATGTGTAAGAAGCACGACAGACCTCTAGAGCTGTTCTGTAGGAGTGACCAGACTTGTGTGTGTCAATTCTGTACTGAGACAGACCACAAGACTCATGACACTGTCCCTCTAGAGGAAGCGTATGGAGAGAGGAAGGCTGAACTGGGGAAGACTGAAACAGAAGTGCAGCAGATGATCCAGGAGAGACTGAAGAAGGTTCAGGAGATCAAACATTCAATAGATCTGAGTCAGAAAGATGCAGAGAGGGAGATATCAGACAGTGTACAGGTCTTCACTGCTCTGGTTCGCTCCATTGAGAGAAGCCAGACTGAGCTCATTGAGGTGATCGAGGAGAAGCGGAAAGCAGCAGAGAGGCAGGCTGAAGGGCTCATTAAAGATCTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAAGCACTGAGCTGGAGCAACTCTCACACACCGaggaccacctccacctcctacaGAGCTGTCCATCCCTCTGCACCCCTCTACCCACCAAggactggtctaggatcagtgttGACAGTGATCTGTGTTTGGGGACTATGAGGAGAGCTGTGTCTCAGCTGGAGGAGACTCTTATGGGTTTAATGAAAAGTCTAtgtgttgatctgtgtgttgTTGCTGAGTTGAAGAGGATACAGCAGTATGCCATAGCTGTGACTCTGGATCCTGATACAGCACATCCCAATCTCATCCTGTCTGAGGATGGGAAACACGTgagatatggagacacacagacaAATCGTCCTAATACCCCAAAGAGGTTTGATAATAGTGTAAATGTCTTAGGAAAGGAGGGCTTCTCCTCAGGTAGATTCTACTTTGAGGTGATGGTCAAGGGGAAGACTGACTGGGATTTAGGAGTGGCCAGAGAGTCCATTAACAGGAAGGGGAAGATCACACTGAGCCCTAAGAATGGATACTGGACTGTCTGGCTGAGGAATGGAGAACAGTACAAGGCTCTTTCTAGCCCCAGTGTCCTGCTCCAACTGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCAGGTCTCCTTTTAtgatgtggaggccaggtctcaTATCTACTCTTTCACTGGCTGCACCTTCACTGAGAAACTATATCCATTCTTCAGTCCCtctagtaatgatgatggtgaaaACTCTTCCCCTCTGATCATCTCTCCTGTCAATGACAGACTGAGTTTTAATCTGAAAATCTAACTGGccagtaaaataaatacatttaaaatagtAATAATCTGTTGTCATACATCACAATCAATATTtcagacacacaaatatcatgCTTCCAAGACATGCGAACCTCTGACTATTACAATaatgggaggttagcattttgtgcgtctaactttctcactcatccttattcacaattcattcaggattatctgtcataatggtagcatccacattaaggtaaaagtttatttttatttttaactattctattattttataagtggctccaaaatgacacaatacattatttacaaaatGATTTATATTTGGTACTAAATAGTGTGAAacgcaaccaaaacaaacagcaaatggaTCTAACAAATGTGTAGAGTTACAAGTTTGATGttgtcattgtgtgctaggaatatggtaCCAAATACTCAACTTTTCACTACtctaatacacatataagtgaatttgtcacaatacttttggtcccctaaaatgtggGGACCCTGTATAAAAAGTGTTGTCATTTCTAAATGGTGAAACCAGTATGTACacaaataccctcaaataaaagcaGAACATCTTTACTTTAACCATATAGTAATAGTTTGAGTTCAAATAGAAACTTTTGGAGTATAGAGACAAAATAAGAAGaaatgcttcactgtcccaaCAATTACTGAGGGctctgtatatagtatatacatttTCTGTTCCGAATCTTTGGGAGTGCAAATAAAACCACCCTTGGGCCAAATTCTTCCAGTTGGGACCCCTGATGTAGCGGAtctagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttcgcTTGTCCGTGGTTCTTGGCCTCGTCTTGCATGAGGCCCCATGTTAGTTTAAAAAGACACTGGATTCCATTTTCTCCCTACGTTCCTGCCAGGAGCACCTCTGTGTTACACGGCGTGTGAGGGATTATTCCTTCCTGGGAATCCTGCAAATGAATCTTAATCACCGTGGAAACAGGCTAGTGGAACgtatagggatggagggagggagggacagatccAGAGATGGGAATTCAGGAAGTTGTTCTGATTGGGTTGTGGTGTTGTCATTCAGTGAAACAGAGGTTCTGTTCTCTTGCTTTATATAGCTATTGTATTGTACAtaactgtgtgttgttgtgtgtgtctgtaagccTGTGTATTGACGGTAGCAGCAGCACTGGTCTGAGCACCCAGACCTCTACCTAGCCTATATTTAGTCTGTGTGATGGACATTGTTTTGAGCCCAAATGGACTACAGAGACTGATAATAAATGCAGTGAGAGAGATTGAGTGTGTTAGCCAGCAAAGCAGTTACCCTGCCAACTGCAGTGCTTCTATTCTGGGGGCATgggcacaaaatggctgccgttaCTCACAGGATGTAAATTACATCTGCCTTTGAGACAGTCTTGAGATGCAGGTCCATGTGTGTAGACAGTGGTGCTGGAGCAgttttttgtaaatgacatcatcaTTTCCTCAATGTTTGTACCGACAGATGTAGACAGTTGATTAGCCTGTCAGTATAGAAGATGCATAAAATGCATCATCCAATTGCAACGTCTGCCTATACCCACTCATATTTCCTCTAGAAAATGTTCAATTTTTAATACCCTCAAACATATAATTAGGAATAAGCCACCATCATTGTCAGTCATTTAACCGGTGAAATGTCCAAACTGCATCTCCAAGTCAGCCATTTGATGGATCTCAATGAGTTTCATGGGAATATGAATGTAGATCTTCTTGAATGACTGTTTTGTGAGTGAAttagagcagatggtgttaaCACACTTGTCCGTTCTTGTTTCAATTAAAGCAGAAATCCTGCCTAGTGGTGC

Function

NR:

description
E3 ubiquitin-protein ligase TRIM21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563713.2 True 4023 mRNA 0.43 2 56726311 56730594

Neighbor

gene id symbol gene type direction distance location
LOC110490369 LOC106576218 coding downstream 68262 56654750 ~ 56658049 (-)
LOC110490355 LOC106576199 coding downstream 1102662 55617681 ~ 55623649 (-)
LOC110490354 LOC106576197 coding downstream 1121842 55584646 ~ 55604469 (-)
LOC110490351 LOC106576194 coding downstream 1160201 55460350 ~ 55566110 (-)
LOC110490757 LOC106576193 coding downstream 1287358 55417169 ~ 55438953 (-)
LOC110490367 LOC106609343 coding upstream 1712 56732306 ~ 56734711 (-)
LOC118938817 NA coding upstream 49062 56779656 ~ 56782516 (-)
LOC110490365 LOC106576224 coding upstream 64756 56795350 ~ 56802777 (-)
LOC110490371 LOC106609349 coding upstream 101731 56832325 ~ 56875598 (-)
LOC110490376 LOC106576228 coding upstream 299550 57030144 ~ 57037055 (-)
G1310108 NA non-coding downstream 18234 56706784 ~ 56708077 (-)
G1310105 NA non-coding downstream 21400 56704698 ~ 56704911 (-)
G1310054 NA non-coding downstream 97376 56620934 ~ 56628935 (-)
G1310046 NA non-coding downstream 126860 56597418 ~ 56599451 (-)
G1310024 NA non-coding downstream 160929 56565100 ~ 56565382 (-)
G1310167 NA non-coding upstream 75425 56806019 ~ 56806694 (-)
G1310169 NA non-coding upstream 95879 56826473 ~ 56832210 (-)
G1310239 NA non-coding upstream 201602 56932196 ~ 56932643 (-)
G1310241 NA non-coding upstream 203946 56934540 ~ 56934747 (-)
G1310242 NA non-coding upstream 206615 56937209 ~ 56937443 (-)
G1309187 NA other downstream 671247 56054491 ~ 56055064 (-)
G1308906 NA other downstream 978558 55746285 ~ 55747753 (-)
G1308831 NA other downstream 1169737 55556232 ~ 55556574 (-)
LOC110490337 LOC106609287 other downstream 1574200 55148760 ~ 55155353 (-)
G1310261 LOC106609352 other upstream 241147 56971741 ~ 56973518 (-)
LOC110490385 LOC106576235 other upstream 395220 57125783 ~ 57143499 (-)
LOC110490387 LOC106609365 other upstream 512086 57231181 ~ 57247843 (-)
G1310744 NA other upstream 648245 57295439 ~ 57441427 (-)
G1311818 NA other upstream 1418392 58148986 ~ 58149397 (-)

Expression


Co-expression Network