LOC110490378 (gdib)


Basic Information

Item Value
gene id LOC110490378
gene name gdib
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 57039788 ~ 57050771 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563740.2
GTGAAGCAGAATCGCTTGACGTTGAACCGCAGCCCCTTTCGTTTCCAGCTTTGCAGATCTCCATTTTCTTCGGGCCACTATTCAGGAAAAGAGGAGAAAACACCTGGGAAAATGAATGAAGAATACGACGTTATCGTGCTGGGTACCGGACTGACGGAATGCATCCTGTCAGGAATCATGTCGGTGAAGGGGAAGAAGGTCTTGCACATGGACCGGAACTCCTACTACGGGGCAGAGAGTGCCTCCATCACTCCCCTGGAGGATCTGTATAAACGCTTCAGTCTCCCAGGCGCCCCACCAGAGTCCATGGGAAAAGGCCGGGACTGGAATGTGGACCTCATCCCAAAGTTCCTCATGGCCAACGGTCAGTTGGTTCGCATGCTGCTGATCACACAGGTGACGCGCTACCTGGACTTCAAGGTGATCGAAGGCAGCTTCGTCTACAAAAAGGGCAGCATCTACAAAGTGCCCTCCACCGAGACCGAGGCCCTGGCATCCAGTCTGATGGGGCTGTTTGAGAAACGGCGCTTCAGGAAGTTCCTGGTTTTCGTGGCTAACTTTGATGAAAACGACCCCAAGACCATGGAGGGCGTGGACCCCAACAAGACGACGATGAGGGACGTGTTCAAGAAGTTTGACCTGGGCCAGGACGTCATCGACTTCACAGGACACTCCCTCGCCCTCTACCGGACAGACGAgtaCCTGGACCTGCCTTGCATGGACTCGCTAAACAGGATCAAGCTGTACAGTGAGTCTCTGGCCAGATATGGCAAGAGTCCGTACCTCTACCCGCTCTACGGCCTGGGGGAGCTGCCCCAAGGGTTCGCCAGATTAAGTGCTATCTACGGAGGAACCTACATGCTGAACAAGCCCATTGAGGAGATTGTCATGGAGGATGGAAAAGTAGTGGGAGTCAAGTCTGAGGGAGAGATCGCCCGCTGTAAGCAGCTGATCTGCGATCCCAGCTATCTAATGGACCGCACAACCAAGGTCGGTCAGGTGATCCGGGTCATCTGCATCATGAGCCACCCCATCAAGAACACCAGCGACGCTAACTCCTGCCAGATCATCATCCCCCAGAACCAGGTCAACAGGAAGCACGaTATCTACGTGTGCATGATCTCCTATACCCATAATGTGGCAGCACAGGGGAAGTATGTGGCCATCGTCAGCACCACAGTGGAGACGGACAACCCTGAGATGGAGGTCAAACCAGCCATGGACCTGCTGGAGCCTGTCGAGCAGAAGTTTGTGAGCATCAGTGACCAGTACGCACCAACTGACATGGGTGCTGAAAGCCAGATCTTCATGTCCCGTACCTACGACGCTACCACCCACTTCGAGACCACCTGCGACGACATTAAGGACATCTACAAGCGGATGACGGGAACCGAATTTGACTTTGCCGAGATGGAGCGCAAGAAGAACGACATCTTCGGCGACGCAGCTGACCAGTAGAGAAACGAGCGAGTCTGCAACACTCGTGAATATCAAATATTTGCCACCGACAACTgaaatctttaaaaaaataaggaAAACTATCCAAAAATATAGATAAATGGGCTGGCTGACGATCCAAGTACATGTTTTGTCCGTTATGGAAGTTCACCCTATATATGAAGTTACAATATAGCATCACTGGAAAAGGGGGCCAGGTGGGAGTTATGCATTTTATAATTACATTCAGACAGTTGTTGCACTGAACATTGGTATACATACGCCCTACATTCGTTTTCATAATGTAACTGATCATTTTCTCTCCTGGATGAGGGCGTTTAGTCCAAATATGTAAAATCAATTGATCAATCAAAAGAAAACCGTACCACGGTGTGGGAGGGTCAAATCCATTTTGTTCAAATACTAATAATAAATAATGCAACCATGTAAAAGCATAAGTGTTTTGGGGAAGTGAATCATGAAATGTGATCAGATcagttgtatttttcttgtcagGTGTTTTCGTTGTTGTGAGGGAGGTAAGTGAGTGGCTTGGCTTGTTCCAGTTACAATGAAGCAATATTCCTAACAGGccgtaaccaaaaaagggtttgGCCAGCAAAGCTTCATTTGACCACCAAAACCTTGTGATTGAGAGAGGAAGCTTTTAATTGTTTCCTGTTACCAGCTAATATAAATGCTCCCATCGATtgtgatttgggggggggggaccttGTTTTTTGTTTTCATTTATCAGCTCCCTTGTCCTGGTGGCTCATCTCCAGCCTCTAGCAGACAGCCCTGGGCAAGGCATCTTACTGTACCTAGGCCAAGCCACTGAACGAGCAAGTGTCGTCAACTACCTGGACCTGTTTGCAGCAGCTTGAGTAACCATAATGTAATAGAATACTATTCTTTCCTTTACTATTAAAAATGAACAGACccaagcagactgaagcaggttggGGATTTGTGGTGATGTTGACTAATTGCTTTAAAAGGACCAAATGTCTACTATGGCAGTATTGATATGACAAGGGCCCTGTTTAAATGTCATCAATGTATAAAAAAAAGATTACAAAAAGACGGTGCTCAAATGATTTCTGTACTGCAAAGTAAAAATGAACTTGTGAAAAAACAAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563740.2 True 2580 mRNA 0.48 11 57039788 57050771

Neighbor

gene id symbol gene type direction distance location
LOC110490376 LOC106576228 coding downstream 2733 57030144 ~ 57037055 (-)
LOC110490371 LOC106609349 coding downstream 164190 56832325 ~ 56875598 (-)
LOC110490365 LOC106576224 coding downstream 237011 56795350 ~ 56802777 (-)
LOC118938817 NA coding downstream 257272 56779656 ~ 56782516 (-)
LOC110490367 LOC106609343 coding downstream 305077 56732306 ~ 56734711 (-)
LOC110490379 ankrd16 coding upstream 2200 57052971 ~ 57058823 (-)
trnay-gua-5 NA coding upstream 6074 57056845 ~ 57056932 (-)
trnay-gua-6 NA coding upstream 6711 57057482 ~ 57057569 (-)
trnay-gua-7 NA coding upstream 7363 57058134 ~ 57058221 (-)
LOC110490380 NA coding upstream 15972 57066743 ~ 57068082 (-)
G1310306 NA non-coding downstream 23950 57015503 ~ 57015838 (-)
G1310289 NA non-coding downstream 41851 56996170 ~ 56997937 (-)
G1310246 NA non-coding downstream 98522 56940809 ~ 56941266 (-)
G1310245 NA non-coding downstream 99021 56940263 ~ 56940767 (-)
G1310244 NA non-coding downstream 100405 56938991 ~ 56939383 (-)
G1310620 NA non-coding upstream 12591 57063362 ~ 57065998 (-)
G1310630 NA non-coding upstream 28183 57078954 ~ 57079259 (-)
G1310631 NA non-coding upstream 28653 57079424 ~ 57079856 (-)
G1310632 NA non-coding upstream 29426 57080197 ~ 57080469 (-)
G1310634 NA non-coding upstream 31937 57082708 ~ 57083157 (-)
G1310261 LOC106609352 other downstream 66270 56971741 ~ 56973518 (-)
G1309187 NA other downstream 984724 56054491 ~ 56055064 (-)
G1308906 NA other downstream 1292035 55746285 ~ 55747753 (-)
G1308831 NA other downstream 1483214 55556232 ~ 55556574 (-)
LOC110490757 LOC106576193 other downstream 1620543 55417169 ~ 55438953 (-)
LOC110490385 LOC106576235 other upstream 75043 57125783 ~ 57143499 (-)
LOC110490387 LOC106609365 other upstream 191909 57231181 ~ 57247843 (-)
G1310744 NA other upstream 328068 57295439 ~ 57441427 (-)
G1311818 NA other upstream 1098215 58148986 ~ 58149397 (-)
G1311869 tsn9 other upstream 1330253 58381024 ~ 58386002 (-)

Expression


Co-expression Network