LOC110490385 (LOC106576235)


Basic Information

Item Value
gene id LOC110490385
gene name LOC106576235
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 57125783 ~ 57143499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563753.2
GTTGAATTTGAGAACTTCATCTTGACCAACACTTGTTAGATCCGTGGGAAAACACTTCTGAATATTTATTTTCCGAAAATCCTCATATACGATTATTTGACTGTCTCGCGCATTGTTGCCTGGATATCAGTACTAGCCTAAATACCAAAACTTTTGGGAATTTTTCTTCCCCGGGAGTTGAACATCGTCCAGGTGGTTTGGGAACACCCTCCTTCCCAAGGGGTGTGTGTGAGAACTCGTCCCGAGATGCGTTCGCTTCTGCCGGTTACTGTGTATTGCATCAGCCTACTCTCCCTCCAGCAGCTCCTGGCTCTCCCGGCCGCAGACCGTCTGGAGAGAAGCAGGTTGGAGCTGCTTAAGAAGCTTCATGcgctgagagaggaggagatcttCACTCCAGAAACTGGCACCGAACTCGCCAGCCTAACAGACTCCAGCCTTTCATCAGACCTCCAGCCATCCATCAGATCTCCAAAATGGCTGCCTGGCTACCTCCGCAGAGACACACCACCCACTGTCATGAACACAGCCCATCTTGAACCTCTGGTACGTGTGAGGCTTGAGGAGGGCGTGGAGCCCCAACGGACAGGGTCAAGAGGTCGTCGCCAGGCCCAATCAGGGTCCCGGGGGGGTCACCACCACCCCCAGCTGATGAGAGTGGGGTGCGCCCTGGGAACCTGCCAGGTTCAGAACCTCAGCCACCGGCTCTATCAGCTGATTGGCCAGAGTGGACGGGAAGACTCCTCCCCCATTAACCCCCGGAGTCCGCATAGTTACGGATGAGAGACTGACGgatacttctccctctcttctctgaaAACATCAACACCCCAGCAAACTTCTATCTATAGACATGTATCTCTATTTTATGTATCACAGATAGCCTTTGCATTAGTATTGGATGTAGTCCATACCTTTTTTAGATCCTGAAATGACCATTTCTGTACTTTTTGAATTACATTTGCCTTACTCCTCTGTACACCTCAAAAATGCAACATGCTGTTTAAGAAAAGGAATCTGACATGAATGAAAGCCTCTTAGTTGACGCTtcccaccaccaaccaccactgGGAACGAATACCTGTCACCCAGAGATGCTCTGGACATTTGGGTCTCGTCAAAGTCTTTGTGTTTCTCCCGGCCTCCTGACTAGTCAAAGAGCTGCAAGGGGCTCAGTTTGACTTCCTAATCCTGTTAATGAAATAATAAATACCCCTGTCCACCGGTCTTTCTACTTAACACAAGCCAACGCAACTGGACGTGTCTGTATAAGGCCTGATGACCTCCACAGCAGCAGTTAGCTCTGGCCCCATTGATCAAACATTTAAACAACTAATGTGGATTTCTACCAGGGCTAGGATCAGATCCCTGTCAGAGGGAATATATTCCTGAAGACCCGTCAAAACGACCCAATGAACCCTTTTACCCCACCCTAAACCCTGCCCCCTTAGATCTGCCAGGACAATTTGAGGGACCATGTTTGACATATCTGGGTTAATCCTCTGATTTACAGACCACCAGCAACCATTTGTGGGCAGACACTGACCTTATAGACACAGACACTAACCTTACAAACACAGACACTGACCTTACAGACAAGAACCTACTGTCCTCTCTCATCTGCAGCCAATGATGTTCCCGACAGAAGCGGTCTGTGGTTCTGTGAAGTATATGTTTCAACAGACCACAGCCTTGACAGCCGCATTCAGCCATCATAGTCAAGTTTAGCAGTGGCTGGATGGAGATCTGCTTCTGGACTCGTCTAGTAGAGACTGTttatagaaagagaaagaagagagtaCACATTTCAATGACTCAGTTCCTACACAAGATGGAggtttttaatgtttttattatGAATCATTGCGGACCTATTTCAGCGGTGAGATCTATTGGTTGGCTCGTGAACACAGTGAACACTCCCGCTGCCCTTATCTCAGGGTCTGAGTGGGGATATTATCCCCTTCATGTGATTCTTAAGTTCTCCCACTAAGTCTCGACTTTATGTTTACGGCAATTTAACCAATCAGACCTAATCTCTTTAGTAGTGCCGCAATGGTGGCGAGGTGGTACACATCGTCTGCTGTATTTATAAACAAAATAAACTTTGACTGTGCCTTGCCTTGCCCATTGGACCGTATAACTACTAGCTAAAGCATCACAAGTTGCCAACCCAAACCCAAAATCTGCCACTAGCAGTACTGCCTAGGAATATTGAGAGGCTTACTTTGGCATTATCAATAATAATCCGGTCAGTTATGATCCTAATACTGCTAGTAGTTTAGTGTGTACACACCAATACATTACGTTGTATGCTTGTAGTGTGTCAAATGAGTCCAAATTAGCACAGAGTCAACAGCAAAGTTCTCTGCTGTTACATTGTGGCTTTGTAATGACAGACCACGGATACCAAAAGTAAGGGAGACAGAGTGCCACATTTTAAATCTGGATACGAAATACGGTAAAAAAATATATGCCCCTAGATTCCCTTTTTCCCTTGTTATAACTGTCTCTGAAATGGTGGGCGGATGCCCTCACTAGAAATAACCAAAAACAATCTCAACTCAGCATGCATGCCAAAAACTAGCCTAACCTTCAAAAGGTGCAGAGCCTGTCGAtctgaaaaaaaaacaagccacaACGTCTCCATGACATCTTTAATACCCATAATAATCATGCAGCCTGGCTCTTTGAAACACATTCAAATGTTTCATATCCTCGATGTCAAAGGGTTAGAATAGTTTAAATCATCCTCAAAGTTCAGACTATTAGTTTTCCAATAACTTTGATCCAAACTTGCTGATGTTGCTGTTATAAACCAGGTCAGCCATTAGTCACACATTCATGTATTTATGACTATAGCTATGTAACTATTAGGTTACTGTGTCGTAATTAAACAGTCACAGGAGTACCCAAAATCAGCTTAGAGTCTTTTAGGGTCCAGGTTTTTACTGTTTTGTTTTGACCACAGTGTTGCCTAAATGAAATCATTCTAGAACTATTTAAGTTAGTTGGGAAAGTGGTTTAAATTCACCaaatatctgacaatacttgacagtcattttgttttttttgtgatcTACATCATACTTTAGTGTGGTCTCTATCCATATCCCCCTTTTATTTTGTTTGACTTATTTTTGTCTTTTTGGACTGAATCACCATAATTAAAACTggggttttattttattttagatttAGCTCATTTAATCGTGGAGTgattctctgtctcactctctctatctcaccatctctccctctcccactctctctccttctatctcagTGATGACGGCGACACCAGGTTGCAGGTCATAATCCGTGGTTCATTGGTTCTTTAAGTCTAATCTGTTCAAAGGCTTTGTGAAACACACATGCCATTGTCTCTGCTGTAATTGAGCTAATCAATGTCTCGTGACAAGACCATTAAAAGGCTTTTCAAACGCTAAGAACCTTGGTGAATCTCTCTTAACTTCTTCTTAACCACCACTGTcacaagtgtgtgtttgtgtctgaccGGCCACATATAGAATCAGGAACCAACCTTGTGTTTGTTGGATTTTTGTTGGGGTCATTTTGTTTTTGCTGTACTTTTTCTTTGTGTTGTGAATCTCATATGACAGTAATTACACGACAGTGTTGTGTCACTGGCGGGTCCGTAGCCTTTCCTAGCAGCATAGCTGAGTGTTTTGTCTGGGTAAACTGCGTACCACCAGATTATTTACGACCTTTGACCACTAATACCTCCCCTTGTGTGTTAAGAGAAACACTCTCCATCAGTCTTACATCAAACCTAACGCTGCCATCGCCTGCCATTGTTAACTTAACCTATGTCGTAAAGAGAATCAAGAGATTGTGTTGGGTGTTCACgtctgtatgtgagtgtgtatgtgtaggtactTATAGTATAGTCGTCCTAACCAGGGATCTGACACATCACAATCCCAGTCTGTTTTTCCTCATTCAATATGTAATTATACTTAAGGTCAGAAGCCTCTTATAGGGTCACAGCAAACTGAGCAAAGCACTTTAATATTGTTAGTTCCTCACAACTTGAATTTCAAATATTGCAATGCTATTTTTAATGACAGATGAGAGTTATTGTATATGTTGCATTTGATAAAGATCTGTATTAATGTCTTTGAAGAGTTGTCAGTGGAGTGGAGTGAAGATGATATCATGTGCACTTGtgcatattatatattattagtgGTACTATGTAAGAAAAGTAATATATTTAAGTTATCTTTGTATGTTTATATATGTATGTCACCAAAGACACTATTTATCTCGCATTTCCCACGCTTCTAAAAGGTGACCTTTTGTTAGGAAAGAAAAATAAATCCTAAATGTAGCTACATGTTCATGTCAGACAATGTCTTTCATTCtctgtaaaaaaataaactaCTGTAGTGAGA
>TU1495171
AGAAGTTGAATTTGAGAACTTCATCTTGACCAACACTTGTTAGATCCGTGGGAAAACACTTCTGAATATTTATTTTCCGAAAATCCTCATATACGTAAGATATTACTAACATTCATAAAATGTACTATTTTATATGAGTTATTATAGTTATAATTTGAAATGCAATATCATCTTTGTGTAAAATGTGAAAAAATGCGTGTAGCtggatacatttttaaaatatattttctttagtGCTTGAGGTTTCTTTTTGCATAGCTTTCAATTGGCAACACATAGAGTGGTTCGTACACTTTGTATGCATGATTAGGCTACTGAATAGTGAGTGAGTGACTAATTCACTTGCAGGTACTATTGATCAAATTATaccatttatttacttttctttaCTTTTTTAATTTTCTGTTTATCACAGGATTATTTGACTGTCTCGCGCATTGTTGCCTGGATATCAGTACTAGCCTAAATACCAAAACTTTTGGGAATTTTTCTTCCCCGGGAGTTGAACATCGTCCAGGTGGTTTGGGAACACCCTCCTTCCCAAGGGGTGTGTGTGAGAACTCGTCCCGAGATGCGTTCGCTTCTGCCGGTTACTGTGTATTGCATCAGCCTACTCTCCCTCCAGCAGCTCCTGGCTCTCCCGGCCGCAGACCGTCTGGAGAGAAGCAGGTTGGAGCTGCTTAAGAAGCTTCATGcgctgagagaggaggagatcttCACTCCAGAAACTGGCACCGAACTCGCCAGCCTAACAGACTCCAGCCTTTCATCAGACCTCCAGCCATCCATCAGATCTCCAAAATGGCTGCCTGGCTACCTCCGCAGAGACACACCACCCACTGTCATGAACACAGCCCATCTTGAACCTCTGGTACGTGTGAGGCTTGAGGAGGGCGTGGAGCCCCAACGGACAGGGTCAAGAGGTCGTCGCCAGGCCCAATCAGGGTCCCGGGGGGGTCACCACCACCCCCAGCTGATGAGAGTGGGGTGCGCCCTGGGAACCTGCCAGGTTCAGAACCTCAGCCACCGGCTCTATCAGCTGATTGGCCAGAGTGGACGGGAAGACTCCTCCCCCATTAACCCCCGGAGTCCGCATAGTTACGGATGAGAGACTGACGgatacttctccctctcttctctgaaAACATCAACACCCCAGCAAACTTCTATCTATAGACATGTATCTCTATTTTATGTATCACAGATAGCCTTTGCATTAGTATTGGATGTAGTCCATACCTTTTTTAGATCCTGAAATGACCATTTCTGTACTTTTTGAATTACATTTGCCTTACTCCTCTGTACACCTCAAAAATGCAACATGCTGTTTAAGAAAAGGAATCTGACATGAATGAAAGCCTCTTAGTTGACGCTtcccaccaccaaccaccactgGGAACGAATACCTGTCACCCAGAGATGCTCTGGACATTTGGGTCTCGTCAAAGTCTTTGTGTTTCTCCCGGCCTCCTGACTAGTCAAAGAGCTGCAAGGGGCTCAGTTTGACTTCCTAATCCTGTTAATGAAATAATAAATACCCCTGTCCACCGGTCTTTCTACTTAACACAAGCCAACGCAACTGGACGTGTCTGTATAAGGCCTGATGACCTCCACAGCAGCAGTTAGCTCTGGCCCCATTGATCAAACATTTAAACAACTAATGTGGATTTCTACCAGGGCTAGGATCAGATCCCTGTCAGAGGGAATATATTCCTGAAGACCCGTCAAAACGACCCAATGAACCCTTTTACCCCACCCTAAACCCTGCCCCCTTAGATCTGCCAGGACAATTTGAGGGACCATGTTTGACATATCTGGGTTAATCCTCTGATTTACAGACCACCAGCAACCATTTGTGGGCAGACACTGACCTTATAGACACAGACACTAACCTTACAAACACAGACACTGACCTTACAGACAAGAACCTACTGTCCTCTCTCATCTGCAGCCAATGATGTTCCCGACAGAAGCGGTCTGTGGTTCTGTGAAGTATATGTTTCAACAGACCACAGCCTTGACAGCCGCATTCAGCCATCATAGTCAAGTTTAGCAGTGGCTGGATGGAGATCTGCTTCTGGACTCGTCTAGTAGAGACTGTttatagaaagagaaagaagagagtaCACATTTCAATGACTCAGTTCCTACACAAGATGGAggtttttaatgtttttattatGAATCATTGCGGACCTATTTCAGCGGTGAGATCTATTGGTTGGCTCGTGAACACAGTGAACACTCCCGCTGCCCTTATCTCAGGGTCTGAGTGGGGATATTATCCCCTTCATGTGATTCTTAAGTTCTCCCACTAAGTCTCGACTTTATGTTTACGGCAATTTAACCAATCAGACCTAATCTCTTTAGTAGTGCCGCAATGGTGGCGAGGTGGTACACATCGTCTGCTGTATTTATAAACAAAATAAACTTTGACTGTGCCTTGCCTTGCCCATTGGACCGTATAACTACTAGCTAAAGCATCACAAGTTGCCAACCCAAACCCAAAATCTGCCACTAGCAGTACTGCCTAGGAATATTGAGAGGCTTACTTTGGCATTATCAATAATAATCCGGTCAGTTATGATCCTAATACTGCTAGTAGTTTAGTGTGTACACACCAATACATTACGTTGTATGCTTGTAGTGTGTCAAATGAGTCCAAATTAGCACAGAGTCAACAGCAAAGTTCTCTGCTGTTACATTGTGGCTTTGTAATGACAGACCACGGATACCAAAAGTAAGGGAGACAGAGTGCCACATTTTAAATCTGGATACGAAATACGGTAAAAAAATATATGCCCCTAGATTCCCTTTTTCCCTTGTTATAACTGTCTCTGAAATGGTGGGCGGATGCCCTCACTAGAAATAACCAAAAACAATCTCAACTCAGCATGCATGCCAAAAACTAGCCTAACCTTCAAAAGGTGCAGAGCCTGTCGAtctgaaaaaaaaacaagccacaACGTCTCCATGACATCTTTAATACCCATAATAATCATGCAGCCTGGCTCTTTGAAACACATTCAAATGTTTCATATCCTCGATGTCAAAGGGTTAGAATAGTTTAAATCATCCTCAAAGTTCAGACTATTAGTTTTCCAATAACTTTGATCCAAACTTGCTGATGTTGCTGTTATAAACCAGGTCAGCCATTAGTCACACATTCATGTATTTATGACTATAGCTATGTAACTATTAGGTTACTGTGTCGTAATTAAACAGTCACAGGAGTACCCAAAATCAGCTTAGAGTCTTTTAGGGTCCAGGTTTTTACTGTTTTGTTTTGACCACAGTGTTGCCTAAATGAAATCATTCTAGAACTATTTAAGTTAGTTGGGAAAGTGGTTTAAATTCACCaaatatctgacaatacttgacagtcattttgttttttttgtgatcTACATCATACTTTAGTGTGGTCTCTATCCATATCCCCCTTTTATTTTGTTTGACTTATTTTTGTCTTTTTGGACTGAATCACCATAATTAAAACTggggttttattttattttagatttAGCTCATTTAATCGTGGAGTgattctctgtctcactctctctatctcaccatctctccctctcccactctctctccttctatctcagTGATGACGGCGACACCAGGTTGCAGGTCATAATCCGTGGTTCATTGGTTCTTTAAGTCTAATCTGTTCAAAGGCTTTGTGAAACACACATGCCATTGTCTCTGCTGTAATTGAGCTAATCAATGTCTCGTGACAAGACCATTAAAAGGCTTTTCAAACGCTAAGAACCTTGGTGAATCTCTCTTAACTTCTTCTTAACCACCACTGTcacaagtgtgtgtttgtgtctgaccGGCCACATATAGAATCAGGAACCAACCTTGTGTTTGTTGGATTTTTGTTGGGGTCATTTTGTTTTTGCTGTACTTTTTCTTTGTGTTGTGAATCTCATATGACAGTAATTACACGACAGTGTTGTGTCACTGGCGGGTCCGTAGCCTTTCCTAGCAGCATAGCTGAGTGTTTTGTCTGGGTAAACTGCGTACCACCAGATTATTTACGACCTTTGACCACTAATACCTCCCCTTGTGTGTTAAGAGAAACACTCTCCATCAGTCTTACATCAAACCTAACGCTGCCATCGCCTGCCATTGTTAACTTAACCTATGTCGTAAAGAGAATCAAGAGATTGTGTTGGGTGTTCACgtctgtatgtgagtgtgtatgtgtaggtactTATAGTATAGTCGTCCTAACCAGGGATCTGACACATCACAATCCCAGTCTGTTTTTCCTCATTCAATATGTAATTATACTTAAGGTCAGAAGCCTCTTATAGGGTCACAGCAAACTGAGCAAAGCACTTTAATATTGTTAGTTCCTCACAACTTGAATTTCAAATATTGCAATGCTATTTTTAATGACAGATGAGAGTTATTGTATATGTTGCATTTGATAAAGATCTGTATTAATGTCTTTGAAGAGTTGTCAGTGGAGTGGAGTGAAGATGATATCATGTGCACTTGtgcatattatatattattagtgGTACTATGTAAGAAAAGTAATATATTTAAGTTATCTTTGTATGTTTATATATGTATGTCACCAAAGACACTATTTATCTCGCATTTCCCACGCTTCTAAAAGGTGACCTTTTGTTAGGAAAGAAAAATAAATCCTAAATGTAGCTACATGTTCATGTCAGACAATGTCTTTCATT

Function

NR:

description
ADM2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563753.2 False 4418 mRNA 0.43 3 57125783 57143495
TU1495171 True 4712 TUCP 0.42 2 57125814 57143499

Neighbor

gene id symbol gene type direction distance location
LOC110490383 LOC106576231 coding downstream 23839 57096165 ~ 57101944 (-)
LOC110490380 NA coding downstream 57701 57066743 ~ 57068082 (-)
LOC110490379 ankrd16 coding downstream 66960 57052971 ~ 57058823 (-)
LOC110490387 LOC106609365 coding upstream 87686 57231181 ~ 57247843 (-)
LOC118936373 LOC106576240 coding upstream 126807 57270302 ~ 57285431 (-)
slc26a4 LOC106576239 coding upstream 149646 57293141 ~ 57307151 (-)
LOC110490395 rpap3 coding upstream 344239 57487734 ~ 57494139 (-)
LOC110490399 LOC106576247 coding upstream 389791 57533286 ~ 57556011 (-)
G1310644 NA non-coding downstream 15396 57110181 ~ 57110387 (-)
G1310634 NA non-coding downstream 42626 57082708 ~ 57083157 (-)
G1310632 NA non-coding downstream 45314 57080197 ~ 57080469 (-)
G1310631 NA non-coding downstream 45927 57079424 ~ 57079856 (-)
G1310630 NA non-coding downstream 46524 57078954 ~ 57079259 (-)
G1310735 NA non-coding upstream 124592 57268087 ~ 57268863 (-)
G1310743 NA non-coding upstream 143873 57287368 ~ 57287607 (-)
G1310741 NA non-coding upstream 144285 57287780 ~ 57288119 (-)
G1310740 NA non-coding upstream 144999 57288494 ~ 57289614 (-)
G1310738 NA non-coding upstream 146379 57289874 ~ 57291443 (-)
G1310261 LOC106609352 other downstream 152265 56971741 ~ 56973518 (-)
G1309187 NA other downstream 1070719 56054491 ~ 56055064 (-)
G1308906 NA other downstream 1378030 55746285 ~ 55747753 (-)
G1308831 NA other downstream 1569209 55556232 ~ 55556574 (-)
LOC110490757 LOC106576193 other downstream 1706538 55417169 ~ 55438953 (-)
G1310744 NA other upstream 235344 57295439 ~ 57441427 (-)
G1311818 NA other upstream 1005491 58148986 ~ 58149397 (-)
G1311869 tsn9 other upstream 1237529 58381024 ~ 58386002 (-)
LOC110490436 LOC106576293 other upstream 1245840 58389335 ~ 58391339 (-)
trnay-gua-7 NA coding downstream 67593 57058134 ~ 57058221 (-)
trnay-gua-6 NA coding downstream 68245 57057482 ~ 57057569 (-)

Expression


Co-expression Network