XLOC_031619 (hip1rb)


Basic Information

Item Value
gene id XLOC_031619
gene name hip1rb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 66366865 ~ 66429357 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061239
AGTAATGCTGTAGTACGACTCAAACCCGGCGGAAAAAAAAGCCACGAAGCCAGAACAGGTTTTTCCTCCATGTCCTACTTATAGCGTCGCGGTGTTCCTGATAAAGCCCACATATGAAATTAAAGCTCACACAGCCACACTGGACTGTCAAACGACGGATACTCGGAGCATAACACGTTTGCCTTTCCAATATAAAGGATGAATTCAATACGACAGGTGCCTTCGCGGGTCAAAAGCAGAAGGACGGAGTCGGTTTTAGGAGCCGAGAGGGAACATTTCGAAAAACAGCAGCTCAGCAGCATCAGCAAGGCAATCAATTCCACAGAGACACCACTGAAGGAGAAGCATGCACGCAGAATTATTTTGGGAACCCACAGAGAGAAAGGGGCCTATACCTTCTGGTCATACGCCGTTGGTCTGCCCTTGCCAAGCAGCGCCATCCTCAGCTGGAAGTTCTGTCATGTGTTACACAAAATCTTGCGCGATGGCCACCGAAATACGTTACAAGACTGCATGAGGCACTACAGCGACATTGCCGAGACAGGGTTATTATGGACTAACACACGGGACAGACACGGATATGCACTGCTGGTTTCCCTTCATGCCAAACTCCTCTGTACCAAGATTGAGTTTCACACTAAGCATTCTGAAATTCCAGCCAGTCTAGAAGTCACGGATGAACTCCTGGAGCGTACAGCTGGAACAGACATCAATAACGTGTTCCAGCTCACAGTAGAGGTGTTTGATTACATGGATGCAGAGCTGCGATTAGCAGAAGCAGTGCTTCACCAGCTCAACATGTCGATCGCTATCTCCACGCTGACGTCAGGCCAGTGTAAACTAGCACCGCTCATCCAGGTCATCCAGGACTGCAGTCACCTGTACCACTACACCGTCAAACTGCTCTTCAAACTGCACGCTTgtCTACCAGCAGACACACTCCAAGGACACCGTGAACGCTTCCATGATCAGTTCCACAGTCTCAAAACATTCCTCAATAAAGCACGAGATATGCTGTACTTCAAGAGGCTCATCCAGATACCGAGACTGCCTGATTCTCCACCCAACTTCCTTCGGGCCTCTGCTCTGGCCGAGCATGTGAAACCCATGGTGGTCATCCCAGATGAAGAGGAGCTTGAGGAGCAGGAGGAGGATGAACCCGAGCCTCTGATAGATGTTAGCGAGGCACTGCCAGTCGCAGCCTCTCAGCCGCTGCAGagTGATATATTTGATCAGGCCTTTGGACCACCTAAAGATGGATTTGATGATAGAGACCTCCAGATCGAACGTTTGAAACGTGAAATTGAATTGCTTCAAGCTGAGCTTGAGAAGATCAAAGGAGAGGCTCAGCGCTATATCACGCAGCTGAAGGCACAAATCAATAGCCTTGAGGGGGAACTGGAGGAACAGCGTATGCAGAAGCAGCGCACCCTGGTGGAGAATGAGCAGCTGCGCATGGAGCTGGAGGCCACCCATCGCCGCAACACTGAACACGAGAGCATGCAGACCAACTTTGTGGAGACAGAAAAAAGAGCCCAAGCAACAGAATTGCGTTATAATAAACTGAAAGAAAAACATGCCGAACTGGTTGCCAACCACGCCGAACTGCTTCGAAAGAGTGCAGACACAGTTAAGATGCTGTCGGCCACGCAGCAGACTCAAGAGGAAATTGAACGAACTAAGCAACAGTTAGCCTTTGAGGTAGACCGAGTCAAACAAGAATCAGACATGAAGTTTGACGAACAGAAGTTTGAAATGGATAAGCTGAAGAGGGAGCTTGAAGCCAAAGCTGCAGAGATCCAAAAAGTCAGGAGTTCATTGCAGACCTCTGAGATGACAGGAGTGCATATGAACAGCTCTATGGCTGCACTTCAGGCTGAGAAAGACAGGCTAACACAGTCTATCAGTAAGAAAGATGCTGAACTGTCTTCGCTGAAGAAGGAGTCTCAGCTGAAAGAGTCTTCTCTACAGCAGGAGCGAGACAGGACCATCAGAGAGCTGGAGGAACTGCAAGGCAAACTCAAAGAGAAGTTGAGTCGTGAAGAGCAGCTGCAGCAGAAGTTGTTAGATGAGCAGTTCACGCTGCTGCAGGCTACAGTCACGGAGGCTGAGAACATTATTCAGGACGCTGTGGCTAAACTAGACGACCCCATACACATCAGCTGTTCCAGCTCCCCAGATTACCTCATCAGCCGGGCTGAGGCCACGCTGGGCTCTGTAGAGAAGGTGCAGGCAGGCCACTCTGAGTATGTGAAGAGTATGAAAGATGCTGGGGGTCTGGTTAGGGCTCTTACTATGTTTTCTCATCTTGCTGCTGACACAATAATCAACGGAAGTGCGACGGCACACATGGCCCCTACTGACCATGCTGATCGTTTGACTGAGCAGTGTAAGAGTTGCGCCACCCAGAGTCTGCAGTATCTTAAGAGTCTTAAATCCAAAGCATCTCTAAGGGGGGCTGATCCCACCGCCATCCAAGCAGCGGTGCAGAAGATTCTTAGAATAGGAAAGGATCTAAGGCCAAAAGGTTTAGATGTCGGCAAGGATGAGCTGGGAGATATGGTGGATAAAGAAATGGCTGCTACCTCTGCTGCTATTGAGGAGGCTGTTAGGAGAATAGATGAAATGATGAGTCAGACCAGAAAAGACGCAACTGGAGTTCAGCTGGAGGTGAATGAAAgGATCCTGAACAGCTGCACTGACCTGATGCAGGCCATTCGTCTTCTGGTGTTGGCATCCACAGACCTGCAGAAGGAGATTGTGGAAGGTGGAAGGgGTGCAGCTTCAGTCAGAGAGTTTTATGCGCGCAATTCTCGCTGGACAGAGGGTCTTATTTCTGCCTCCAAAGCTGTGGGATGGGGCGCGACGCAGATGgtTGATTCTGCTGATAAAGTGGTGTTGCACACTGGGAAATATGAAGAGTTGATCGTCTGCTCTCACGAGATCGCTGCTAGTACTGCACAGCTTGTTGCAGCCTCCAAGGTGAAAGCCGACCGTGGCAGTAAAAGGCTTGGCAATCTCCAGCAGGCCTCTCGTCATGTTAATGAGATGGCTGCTAAAGTGGTGGCGTCCACCAAGACAGGGCAGGACCAGGTCGAGGATAAGGacACCATGGACTTCTCTGGACTGTCTCTAATTAAgcttaaaaaagaagaaatggaATCACAGGTGAAGGTTCTGGAGCTTGAGACGATGTTAGAGAATGAGCGTCTGCGTTTGGGTGAACTCAGGAAGAAACACTACGAGATAGCAGGAGTTCCTCTAGAACAGCTCTCTGAAGACAATGGCCTGAAAGCGTCTCCAGCCTCCCCAAAACCCAGCTCCAAACCCGGCCTAATGAAGAAACCAGTTCTCGCACAAAAACCCAACATCCCACCTAAAACCATGttaagGTGAGCACATCTGGATAATGATATGTGGGATGAAGATATGTGAAGACTCAGTGACTGTCAAATGGATGTGAATACAGAACCCATCTCGAA
>TCONS_00061240
GTTCCAGCTCACAGTAGAGGTGTTTGATTACATGGATGCAGAGCTGCGATTAGCAGAAGCAGTGCTTCACCAGCTCAACATGTCGATCGCTATCTCCACGCTGACGTCAGGCCAGTGTAAACTAGCACCGCTCATCCAGGTCATCCAGGACTGCAGTCACCTGTACCACTACACCGTCAAACTGCTCTTCAAACTGCACGCTTgtCTACCAGCAGACACACTCCAAGGACACCGTGAACGCTTCCATGATCAGTTCCACAGTCTCAAAACATTCCTCAATAAAGCACGAGATATGCTGTACTTCAAGAGGCTCATCCAGATACCGAGACTGCCTGATTCTCCACCCAACTTCCTTCGGGCCTCTGCTCTGGCCGAGCATGTGAAACCCATGGTGGTCATCCCAGATGAAGAGGAGCTTGAGGAGCAGGAGGAGGATGAACCCGAGCCTCTGATAGATGTTAGCGAGGCACTGCCAGTCGCAGCCTCTCAGCCGCTGCAGagTGATATATTTGATCAGGCCTTTGGACCACCTAAAGATGGATTTGATGATAGAGACCTCCAGATCGAACGTTTGAAACGTGAAATTGAATTGCTTCAAGCTGAGCTTGAGAAGATCAAAGGAGAGGCTCAGCGCTATATCACGCAGCTGAAGGCACAAATCAATAGCCTTGAGGGGGAACTGGAGGAACAGCGTATGCAGAAGCAGCGCACCCTGGTGGAGAATGAGCAGCTGCGCATGGAGCTGGAGGCCACCCATCGCCGCAACACTGAACACGAGAGCATGCAGACCAACTTTGTGGAGACAGAAAAAAGAGCCCAAGCAACAGAATTGCGTTATAATAAACTGAAAGAAAAACATGCCGAACTGGTTGCCAACCACGCCGAACTGCTTCGAAAGAGTGCAGACACAGTTAAGATGCTGTCGGCCACGCAGCAGACTCAAGAGGAAATTGAACGAACTAAGCAACAGTTAGCCTTTGAGGTAGACCGAGTCAAACAAGAATCAGACATGAAGTTTGACGAACAGAAGTTTGAAATGGATAAGCTGAAGAGGGAGCTTGAAGCCAAAGCTGCAGAGATCCAAAAAGTCAGGAGTTCATTGCAGACCTCTGAGATGACAGGAGTGCATATGAACAGCTCTATGGCTGCACTTCAGGCTGAGAAAGACAGGCTAACACAGTCTATCAGTAAGAAAGATGCTGAACTGTCTTCGCTGAAGAAGGAGTCTCAGCTGAAAGAGTCTTCTCTACAGCAGGAGCGAGACAGGACCATCAGAGAGCTGGAGGAACTGCAAGGCAAACTCAAAGAGAAGTTGAGTCGTGAAGAGCAGCTGCAGCAGAAGTTGTTAGATGAGCAGTTCACGCTGCTGCAGGCTACAGTCACGGAGGCTGAGAACATTATTCAGGACGCTGTGGCTAAACTAGACGACCCCATACACATCAGCTGTTCCAGCTCCCCAGATTACCTCATCAGCCGGGCTGAGGCCACGCTGGGCTCTGTAGAGAAGGTGCAGGCAGGCCACTCTGAGTATGTGAAGAGTATGAAAGATGCTGGGGGTCTGGTTAGGGCTCTTACTATGTTTTCTCATCTTGCTGCTGACACAATAATCAACGGAAGTGCGACGGCACACATGGCCCCTACTGACCATGCTGATCGTTTGACTGAGCAGTGTAAGAGTTGCGCCACCCAGAGTCTGCAGTATCTTAAGAGTCTTAAATCCAAAGCATCTCTAAGGGGGGCTGATCCCACCGCCATCCAAGCAGCGGTGCAGAAGATTCTTAGAATAGGAAAGGATCTAAGGCCAAAAGGTTTAGATGTCGGCAAGGATGAGCTGGGAGATATGGTGGATAAAGAAATGGCTGCTACCTCTGCTGCTATTGAGGAGGCTGTTAGGAGAATAGATGAAATGATGAGTCAGACCAGAAAAGACGCAACTGGAGTTCAGCTGGAGGTGAATGAAAgGATCCTGAACAGCTGCACTGACCTGATGCAGGCCATTCGTCTTCTGGTGTTGGCATCCACAGACCTGCAGAAGGAGATTGTGGAAGGTGGAAGGgGTGCAGCTTCAGTCAGAGAGTTTTATGCGCGCAATTCTCGCTGGACAGAGGGTCTTATTTCTGCCTCCAAAGCTGTGGGATGGGGCGCGACGCAGATGgtTGATTCTGCTGATAAAGTGGTGTTGCACACTGGGAAATATGAAGAGTTGATCGTCTGCTCTCACGAGATCGCTGCTAGTACTGCACAGCTTGTTGCAGCCTCCAAGGTGAAAGCCGACCGTGGCAGTAAAAGGCTTGGCAATCTCCAGCAGGCCTCTCGTCATGTTAATGAGATGGCTGCTAAAGTGGTGGCGTCCACCAAGACAGGGCAGGACCAGGTCGAGGATAAGGacACCATGGACTTCTCTGGACTGTCTCTAATTAAgcttaaaaaagaagaaatggaATCACAGGTGAAGGTTCTGGAGCTTGAGACGATGTTAGAGAATGAGCGTCTGCGTTTGGGTGAACTCAGGAAGAAACACTACGAGATAGCAGGAGTTCCTCTAGAACAGCTCTCTGAAGACAATGGCCTGAAAGCGTCTCCAGCCTCCCCAAAACCCAGCTCCAAACCCGGCCTAATGAAGAAACCAGTTCTCGCACAAAAACCCAACATCCCACCTAAAACCATGGTAACACTGTTTAATAAACGTTACacacttttacagtattttgtcAAATACTACACAGAGGGGTCCCTGTTGAGAGGCTAA
>TCONS_00061241
cgTGGACTGATTCCTGTTGTTGTATTGATGAATCctttacccaaagagcaccgaccaaaTATTTGAGTTACTCCTGAGCgcttttggtttgtttttctgGATTAATATTTGTAGCTTTTCTAGAAAATCCTTTTTGATTCATGAGTTTTgcgatatttgaactagaaacaagacaaaaaatctaagtaagtaaagcagtttttgcagtgtgcttatttatatttatttatttctgtagtAGTTTTCTGATGTTTGTATTGATGTTTGGCATTCCTCTGAACATTCATTTTAACATTCAGATTCTTTGATTATAAAGATTTGACTGTGTAATTTTATGGTTAGCTCTTTGTTTTGCTAACACAACTTTGCTTTCACTTTCCATCAGTGATTCTGCTGATAAAGTGGTGTTGCACACTGGGAAATATGAAGAGTTGATCGTCTGCTCTCACGAGATCGCTGCTAGTACTGCACAGCTTGTTGCAGCCTCCAAGGTGAAAGCCGACCGTGGCAGTAAAAGGCTTGGCAATCTCCAGCAGGCCTCTCGTCATGTTAATGAGATGGCTGCTAAAGTGGTGGCGTCCACCAAGACAGGGCAGGACCAGGTCGAGGATAAGGacACCATGGACTTCTCTGGACTGTCTCTAATTAAgcttaaaaaagaagaaatggaATCACAGGTGAAGGTTCTGGAGCTTGAGACGATGTTAGAGAATG

Function

symbol description
hip1rb Predicted to enable actin filament binding activity; anion binding activity; and clathrin binding activity. Predicted to be involved in several processes, including actin filament organization; activation of cysteine-type endopeptidase activity involved in apoptotic process; and clathrin coat assembly. Predicted to act upstream of or within apoptotic process and regulation of clathrin-dependent endocytosis. Predicted to be located in clathrin-coated pit and cytoplasm. Predicted to be active in actin cortical patch and clathrin-coated vesicle. Orthologous to human HIP1R (huntingtin interacting protein 1 related).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0048260 positive regulation of receptor-mediated endocytosis biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0007015 actin filament organization biological_process
GO:2000369 regulation of clathrin-dependent endocytosis biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0032051 clathrin light chain binding molecular_function
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0035615 clathrin adaptor activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0030276 clathrin binding molecular_function
GO:0003779 actin binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-59 Predicted to enable actin filament binding activity; anion binding activity; and clathrin binding activity. Predicted to be involved in several processes, including actin filament organization; activation of cysteine-type endopeptidase activity involved in apoptotic process; and clathrin coat assembly. Predicted to act upstream of or within apoptotic process and regulation of clathrin-dependent endocytosis. Predicted to be located in clathrin-coated pit and cytoplasm. Predicted to be active in actin cortical patch and clathrin-coated vesicle. Orthologous to human HIP1R (huntingtin interacting protein 1 related).

Ensembl:

ensembl_id ENSDARG00000102458

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061239 False 3482 mRNA 0.49 32 66366865 66429357
TCONS_00061240 False 2749 mRNA 0.50 25 66368957 66397688
TCONS_00061241 True 714 lncRNA 0.39 4 66369220 66371355

Neighbor

gene id symbol gene type direction distance location
XLOC_031618 cplx4b coding downstream 15165 66347006 ~ 66351700 (-)
XLOC_031617 prlrb coding downstream 65723 66282256 ~ 66301142 (-)
XLOC_031616 NA coding downstream 122733 66239915 ~ 66244132 (-)
XLOC_031615 coq2 coding downstream 150937 66203154 ~ 66215928 (-)
XLOC_031614 mboat4 coding downstream 206450 66157117 ~ 66160415 (-)
XLOC_031620 CU929288.1 coding upstream 107860 66537217 ~ 66537334 (-)
XLOC_031621 mn1b coding upstream 246999 66676356 ~ 66702479 (-)
XLOC_031622 kat5b coding upstream 303932 66733289 ~ 66749535 (-)
XLOC_031623 fermt3a coding upstream 326391 66755748 ~ 66798729 (-)
XLOC_031624 stip1 coding upstream 377822 66807179 ~ 66823794 (-)
XLOC_031612 NA non-coding downstream 341921 66022664 ~ 66024944 (-)
XLOC_031608 NA non-coding downstream 692230 65670605 ~ 65674635 (-)
XLOC_031606 dre-mir-455-1 non-coding downstream 1116391 65250379 ~ 65250474 (-)
XLOC_031594 NA non-coding downstream 1586641 64774973 ~ 64780224 (-)
XLOC_031627 BX897741.1 non-coding upstream 732085 67161442 ~ 67164419 (-)
XLOC_031644 NA non-coding upstream 1535150 67964507 ~ 67972342 (-)
XLOC_031650 CABZ01083943.1 non-coding upstream 1776595 68205952 ~ 68214334 (-)
XLOC_031655 LO017735.1 non-coding upstream 2188601 68617958 ~ 68618089 (-)

Expression


Co-expression Network