XLOC_003162 (mmp19)


Basic Information

Item Value
gene id XLOC_003162
gene name mmp19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3279039 ~ 3291771 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006241
AACGTGTTTAATACATTCAAGATGTATTCGGTAAAATTACCATATCAAGTTTAAACTACAGAGATTTTTGTTCACTAAAAGCTTAAATAGCTATGTTTCCCCTACAGTAGTTCCACTTCGCCGGATCACAATGCTAGCGTAACTTACTTCTTGTCAGATCAAACCACTGGAGCTCAGAGCAGACTGGGATTATTATGGCTCAATGGATGCAATACACAATATTTCTGACTGCTTTTCTGCGTGTATGGTCGGCTCCACAGACGAGCAAAAGACGAGAGTTCACCGAGGCTCAGACATACCTGAGGCGGTTTGGATATCTAGATACTCCACTGAACCCAGAAGCTCAGAGAGATTCCAGTGAGTGGGATATGAAGGTGGCTCTCAGTCTCTTTCAGAGGGTTTCAGGTCTGCCCGTCACTGGAAATCTGGACAGAGCGACTGTTTTTAAAATGAGGGAGCCGCGCTGTGGTGTTGAAGACCCGTTCAACCAGAAGTCTTTCAAATACAGGCGATTTGGTGGatactggagaaaaaaaaacttaacatatCGAATTTACAACTATACCCCAGATATGGGTAAATCCGCAACGCAGACGGCGATACGCACAGCCTTTAAGTACTGGAGTGACGTGACCCCGCTCAGCTTTACAGAGATTCACTTCGGCACTGCTGATATCAGGATCTCCTTTCACAAGAGAGATGGCTGTCCATCGCCTTTTGATGGGCCGGGTCATGTTCTTGCTCACGCCGAAGCTCCTCCGTCAGGAATCGTTCACTTTGATGAAGACGAGTTCTGGACTGAAGGGAAGTATTATGGCTCTAATCTGCGTATCGTTGCGGCTCATGAGATCGGGCACGCTCTGGGTTTGGGTCACTCTCAGTACAGCAGCGCACTAATGGCAGCACACTACACCGGCTACCAGGTCAACTTCAGACTGCACATCGACGACATCAGAGGAATCCAAGCCATTTATGGTAAAAGGGTCTCCAGTACGACTACTGCTGATGATATCTATGATGTAACATATCCCACAATGATGGCCCCGTTCCCTAGAGGTGATGTTCTGGATCCGTGCAACGCCAAACTTGATGCTATAATGCTGGGTCCCTGGCGTAAGACATATGCATTCAGTGGGGATTATGTGTGGACGGTAACAGACACAGGTCATAACTCTCCAGTGAAAATAAACCTGCTGTGGAAAGGGCTGCCAGGAAACCTGAATGCAGCGGTTTACTCCTCGAGAACCAACAAGACATACTTCTTTAAAGGTGAAAAAGTCTGGAGGTACACAAATTACCGTCTTGATTATCGATACCCCAAACCACTGAAAAGAATCCCGGCCAACATCGACGCTGCTTTGTACCATGAGAAGAACaagaaaatcttcttttttaAGGGCTCAGGCTATTGGCAGTGGGACGAAATGGTTTACAATGACCTCAGCATTTACCCCAAACCCATTTCACGCCTGTTTACTGGCATCCCATCAAATCCCGACGCATCCTTCACATGGACCAATGGGAAAATGTATTTCTTCAAAGGTGACAAGTACTGGCGCGTCAGTGAACAGTTCACTGTTGATTCTGGATATCCGCTCAGTAAACGTGTCCGCTGGATGAGGTGCAACTAA
>TCONS_00006242
CTGGACAGAGCGACTGTTTTTAAAATGAGGGAGCCGCGCTGTGGTGTTGAAGACCCGTTCAACCAGAAGTCTTTCAAATACAGGCGATTTGGatactggagaaaaaaaaacttaacatatCGAATTTACAACTATACCCCAGATATGGGTAAATCCGCAACGCAGACGGCGATACGCACAGCCTTTAAGTACTGGAGTGACGTGACCCCGCTCAGCTTTACAGAGATTCACTTCGGCACTGCTGATATCAGGATCTCCTTTCACAAGAGAGATGGCTGTCCATCGCCTTTTGATGGGCCGGGTCATGTTCTTGCTCACGCCGAAGCTCCTCCGTCAGGAATCGTTCACTTTGATGAAGACGAGTTCTGGACTGAAGGGAAGTATTATGGCTCTAATCTGCGTATCGTTGCGGCTCATGAGATCGGGCACGCTCTGGGTTTGGGTCACTCTCAGTACAGCAGCGCACTAATGGCAGCACACTACACCGGCTACCAGGTCAACTTCAGACTGCACATCGACGACATCAGAGGAATCCAAGCCATTTATGGTGAGATATtcttAATACTCATGTTAGTGTGGACAGGGCCTAAAATGCCCAGTACATGTGCACCTGTGGGTCCCTGGCGTAAGACATATGCATTCAGTGGGGATTATGTGTGGACGGTAACAGACACAGGTCATAACTCTCCAGTGAAAATAAACCTGCTGTGGAAAGGGCTGCCAGGAAACCTGAATGCAGCGGTTTACTCCTCGAGAACCAACAAGACATACTTCTTTAAAGGTGAAAAAGTCTGGAGGTACACAAATTACCGTCTTGATTATCGATACCCCAAACCACTGAAAAGAATCCCGGCCAACATCGACGCTGCTTTGTACCATGAGAAGAACaagaaaatcttcttttttaAGGGCTCAGGCTATTGGCAGTGGGACGAAATGGTTTACAATGACCTCAGCATTTACCCCAAACCCATTTCACGCCTGTTTACTGGCATCCCATCAAATCCCGACGCATCCTTCACATGGACCAATGGGAAAATGTATTTCTTCAAAGGTGACAAGTACTGGCGCGTCAGTGAACAGTTCACTGTTGATTCTGGATATCCGCTCAGTAAACGTGTCCGCTGGATGAGGTacgtctccaaaaccccacaggtggacaaatctacacttgtttttattcaaacaaatataaatatgcatataataaataatgctgataataataataacatcatacagatgcagattgtcatgaataaactgaaaaagccccccgagataaagaaggcataCAGGTTTTTACATTTATGTCGAAAATAA

Function

symbol description
mmp19 Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP19 (matrix metallopeptidase 19).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-100308-3 Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP19 (matrix metallopeptidase 19).

Ensembl:

ensembl_id ENSDARG00000091557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006241 False 1631 mRNA 0.46 10 3279039 3289796
TCONS_00006242 True 1323 mRNA 0.45 8 3281899 3291771

Neighbor

gene id symbol gene type direction distance location
XLOC_003161 timeless coding upstream 7019 3211826 ~ 3272020 (+)
XLOC_003160 NA coding upstream 72341 3203487 ~ 3206698 (+)
XLOC_003158 cpne5b coding upstream 83157 3005536 ~ 3195882 (+)
XLOC_003159 dre-mir-724 coding upstream 102269 3176686 ~ 3176770 (+)
XLOC_003157 kif21b coding upstream 304972 2855430 ~ 2974067 (+)
XLOC_003163 sarnp coding downstream 16885 3308656 ~ 3318747 (+)
XLOC_003164 NA coding downstream 39342 3331113 ~ 3333714 (+)
XLOC_003165 pusl1 coding downstream 207340 3499111 ~ 3525259 (+)
XLOC_003166 CR558302.1 coding downstream 247217 3538988 ~ 3566250 (+)
XLOC_003167 si:dkey-33m11.8 coding downstream 284192 3575963 ~ 3584553 (+)
XLOC_003250 BX324177.11 misc downstream 8054032 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8081115 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8094591 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8126262 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8137622 11429393 ~ 11429689 (+)
XLOC_003156 CT583672.1 non-coding upstream 450364 2827553 ~ 2828675 (+)
XLOC_003149 FQ790208.1 non-coding upstream 663016 2615070 ~ 2616023 (+)
XLOC_003140 NA non-coding upstream 958684 2308209 ~ 2320355 (+)
XLOC_003169 NA non-coding downstream 323979 3615750 ~ 3735803 (+)
XLOC_003170 NA non-coding downstream 479495 3771266 ~ 3783125 (+)
XLOC_003176 CR559931.1 non-coding downstream 2189982 5481753 ~ 5481884 (+)
XLOC_003178 CU855733.1 non-coding downstream 2239672 5531443 ~ 5531576 (+)

Expression


Co-expression Network