Fish Transcriptome and Expression Database

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model fish

XLOC_031620 (CU929288.1)

Basic Information

Item	Value
gene id	XLOC_031620
gene name	CU929288.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	66537217 ~ 66537334 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061242
TATggcggcagctagctctctgcaactctcacatggttgccaactgaagctaagcaggactttgcttggtcagtacctggattgaagaccacttgggaaagctaggttgctgcctaAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080999

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00061242	True	118	rRNA	0.50	1	66537217	66537334

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_031619	hip1rb	coding	downstream	107860	66366865 ~ 66429357 (-)
XLOC_031618	cplx4b	coding	downstream	185517	66347006 ~ 66351700 (-)
XLOC_031617	prlrb	coding	downstream	236075	66282256 ~ 66301142 (-)
XLOC_031616	NA	coding	downstream	293085	66239915 ~ 66244132 (-)
XLOC_031615	coq2	coding	downstream	321289	66203154 ~ 66215928 (-)
XLOC_031621	mn1b	coding	upstream	139022	66676356 ~ 66702479 (-)
XLOC_031622	kat5b	coding	upstream	195955	66733289 ~ 66749535 (-)
XLOC_031623	fermt3a	coding	upstream	218414	66755748 ~ 66798729 (-)
XLOC_031624	stip1	coding	upstream	269845	66807179 ~ 66823794 (-)
XLOC_031625	rps6ka4	coding	upstream	542206	67079540 ~ 67115872 (-)
XLOC_031612	NA	non-coding	downstream	512273	66022664 ~ 66024944 (-)
XLOC_031608	NA	non-coding	downstream	862582	65670605 ~ 65674635 (-)
XLOC_031606	dre-mir-455-1	non-coding	downstream	1286743	65250379 ~ 65250474 (-)
XLOC_031594	NA	non-coding	downstream	1756993	64774973 ~ 64780224 (-)
XLOC_031627	BX897741.1	non-coding	upstream	624108	67161442 ~ 67164419 (-)
XLOC_031644	NA	non-coding	upstream	1427173	67964507 ~ 67972342 (-)
XLOC_031650	CABZ01083943.1	non-coding	upstream	1668618	68205952 ~ 68214334 (-)
XLOC_031655	LO017735.1	non-coding	upstream	2080624	68617958 ~ 68618089 (-)
XLOC_031656	NA	non-coding	upstream	2084764	68622098 ~ 68668542 (-)

Expression

Co-expression Network