Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110490765 |
| gene name | mybpc1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 57979914 ~ 58017024 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| mybpc1 | Acts upstream of or within skeletal muscle fiber development. Is expressed in heart tube; slow muscle cell; and trunk. Used to study distal arthrogryposis. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1B and lethal congenital contracture syndrome 4. Orthologous to human MYBPC1 (myosin binding protein C1). |
| description |
|---|
| myosin-binding protein C, slow-type isoform X18 |
| id | description |
|---|---|
| K12557 | MYBPC1; myosin-binding protein C, slow-type |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036944785.1 | False | 5261 | mRNA | 0.52 | 34 | 57979914 | 58017024 |
| XM_036944786.1 | False | 5252 | mRNA | 0.52 | 33 | 57979914 | 58017024 |
| XM_036944787.1 | False | 5252 | mRNA | 0.52 | 33 | 57979914 | 58017024 |
| XM_036944788.1 | False | 5243 | mRNA | 0.52 | 32 | 57979914 | 58017024 |
| XM_036944789.1 | False | 5219 | mRNA | 0.52 | 33 | 57979914 | 58017024 |
| XM_036944790.1 | False | 5183 | mRNA | 0.52 | 33 | 57979914 | 58017024 |
| XM_036944791.1 | False | 5300 | mRNA | 0.52 | 35 | 57979914 | 58017024 |
| XM_036944792.1 | False | 5177 | mRNA | 0.52 | 32 | 57979914 | 58017024 |
| XM_036944793.1 | False | 5065 | mRNA | 0.52 | 33 | 57979915 | 58017024 |
| XM_036944794.1 | False | 4858 | mRNA | 0.51 | 33 | 57979915 | 58017024 |
| XM_036944795.1 | False | 4774 | mRNA | 0.51 | 31 | 57979915 | 58017024 |
| XM_036944796.1 | False | 4765 | mRNA | 0.51 | 31 | 57979915 | 58017024 |
| XM_036944797.1 | False | 4723 | mRNA | 0.51 | 30 | 57979915 | 58017024 |
| XM_036944798.1 | False | 4663 | mRNA | 0.51 | 32 | 57979915 | 58017024 |
| XM_036944799.1 | False | 4621 | mRNA | 0.51 | 31 | 57979915 | 58017024 |
| XM_036944800.1 | False | 4585 | mRNA | 0.51 | 31 | 57979915 | 58017024 |
| XM_036944801.1 | False | 4579 | mRNA | 0.51 | 30 | 57979915 | 58017024 |
| XM_036944802.1 | False | 4501 | mRNA | 0.51 | 29 | 57979915 | 58017024 |
| XM_036944803.1 | False | 4450 | mRNA | 0.51 | 28 | 57979915 | 58017024 |
| XM_036944804.1 | True | 4426 | mRNA | 0.51 | 27 | 57979915 | 58017024 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490417 | spic | coding | upstream | 8298 | 57969231 ~ 57971616 (+) |
| LOC110490416 | LOC106576270 | coding | upstream | 14850 | 57959580 ~ 57965064 (+) |
| LOC110490413 | LOC106576268 | coding | upstream | 33232 | 57921338 ~ 57946682 (+) |
| LOC110514203 | LOC106576268 | coding | upstream | 71743 | 57898842 ~ 57908171 (+) |
| LOC118938927 | LOC106576267 | coding | upstream | 88855 | 57888362 ~ 57891059 (+) |
| LOC110490419 | LOC106576273 | coding | downstream | 452 | 58017476 ~ 58035699 (+) |
| LOC100135998 | LOC100135998 | coding | downstream | 46202 | 58063226 ~ 58066442 (+) |
| LOC110490421 | LOC106576274 | coding | downstream | 79761 | 58096785 ~ 58102231 (+) |
| LOC100136741 | LOC100136741 | coding | downstream | 97104 | 58102240 ~ 58136639 (+) |
| pmch | LOC106576280 | coding | downstream | 135457 | 58152481 ~ 58154147 (+) |
| G1311156 | NA | non-coding | upstream | 23149 | 57955503 ~ 57956765 (+) |
| G1311170 | NA | non-coding | upstream | 42586 | 57936903 ~ 57937328 (+) |
| G1311158 | NA | non-coding | upstream | 59999 | 57914651 ~ 57919915 (+) |
| G1311150 | NA | non-coding | upstream | 68400 | 57896052 ~ 57911514 (+) |
| LOC110490411 | r51a1 | non-coding | upstream | 112188 | 57864481 ~ 57868699 (+) |
| LOC110490425 | nup37 | non-coding | downstream | 160934 | 58172956 ~ 58182616 (+) |
| G1311279 | NA | non-coding | downstream | 172199 | 58189223 ~ 58192466 (+) |
| G1311283 | LOC106609449 | non-coding | downstream | 186763 | 58203787 ~ 58244009 (+) |
| G1310321 | gdib | other | upstream | 936652 | 57039799 ~ 57050944 (+) |
| G1309787 | NA | other | upstream | 1065691 | 56912331 ~ 56914223 (+) |
| G1309163 | LOC100136012 | other | upstream | 1942511 | 56036902 ~ 56037403 (+) |
| G1309147 | NA | other | upstream | 1962966 | 56016448 ~ 56016948 (+) |
| LOC110490357 | LOC106609270 | other | upstream | 2396059 | 55569924 ~ 55583925 (+) |
| LOC110490438 | LOC106576294 | other | downstream | 419520 | 58435813 ~ 58455629 (+) |
| LOC110490440 | LOC106576296 | other | downstream | 460213 | 58477237 ~ 58505176 (+) |
| LOC110490442 | LOC106609443 | other | downstream | 511890 | 58514317 ~ 58550337 (+) |
| LOC110490444 | LOC106576210 | other | downstream | 537729 | 58554753 ~ 58565413 (+) |
