XLOC_031626 (rom1a)


Basic Information

Item Value
gene id XLOC_031626
gene name rom1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 67126774 ~ 67145505 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061252
GGAGGTGCAAGGGCACTGAGTGGGCATCTCGGGGGGGATCACCACACAAAACATCCGGTCTGACCTTTGCTAACGGATTAATTGACGACGGCATACAGAATAGCGGCTGAATTGTTTGGATAAAACTGAATTTATTGAACAACTGAAGGATTACACCGAGTACTtatctacttttttattttatttctgcagCTTCAGCTCAATTCGCGGGAACTTCTCATTTTTAATAGCTTATTTTCAACACTTCCTTTTTTTCGGTCAAGTTTACTCCATTATAATCTATCACAATGGTCGTGGGTAAGATGAAGTTCACGTTTCAGAAAAGGGTGAAGTTGGCCCAGGGTTTATGGATGCTGTCGTGGTTGGCGACGGTTGGTGGAGCGATCACCTTCACTTTAGGATGCTTCCTAAAGACTGAGCTACGAAGGAGGGGAGAGGTAATGGACAACACAGACATCCATTGTGTGCCCAACACCTTGATGATTGTTGGTCTGGCTTCGATGGGCGGCAATTACTTTGCCAGTCGAATCTGCCAGGATGCCCTGGATGCCGGGCGTTTCCCACGGTGGAAGACCTACATGAAGCCTTTTTTTGGCTGCTCCATTTTCTTCACCACCCTCATGTTGATTTCAATCATCTTGAGTTACATCATGAAGGGCAGCCTGGAGACCTCGCTGAAAATCGGCCTGAAGAACGGCATCCGCTTCTACAAGGACACCGATATCCCTGGCCGCTGCTTCCAAAAGCAGACCATCGACCGGCTTCAGATGGAGTTCCACTGCTGCGGAAACACAGACTACAGGGATTGGTTCGAGGTGCAGTGGATCAGCAACCGCTACCTGGATTTCAGCTCTAAGGAAGTTAAGGACCGCATTAGGAGCAATGTCGACGGCCGCTATTTGGTGGACGGTGTGCCCTTCAGCTGCTGTAACCCCAGCTCTCCCAGACCCTGCATTCAGTACAAAATCACCAACGACTCTGCCCACTACAACTACGAGCACGAGACGGAGGAGCTCAACCTCTTCATCCACGGCTGCAGGGAAGCTCTGGTCAACTACTTCATGGGGCTGATGAACACCATTGGAGCCGTCGTTCTGTCCGTCTTTCTCATTCAGTGCTCGGTGTTGTCTAGCGTGCGCCTCCTGCAAACATCCATGGAAGCGGTAGCCGGACAGGAGAACGTGGAGATCGACACTGAAGGCTACTTGCTGGAGAAAGCCTTGAAGGAGACCATCATGGAGTACGTGGATCCTGTGATGAAGCTCCTTTTGCTGAATCAAGTCGGATCTTCTGAAGATAAAGCAGAAGCAGGAGCcgcaaccagctaaaaccatcttcATCCCACATCTGAAACCTTTCCAGCTGGAGGCTGAGAGTGCTGACAAATCGTCATCAATCCAATAAtacattcatttcttttcattcgggttaaggctggtttatagtTCTGCGTCAGGCGTACGTTGTGCTCTAGCGCAGCCTTCACGCGGTCGCAGACCCCTTGCCGTGGCCGACACTGATGCACAGCTCTTGAAAATTGTAACTACATGTCGTAATggcacgtagcgcaagctctgtgattggttggcttggtagcagtGACATGTGTGGGCGGTGCTAAGAGCCACTTGATCCcaatggagtgagtgtttacaagtgttgagtcctgtgtttacctcataattAAAGACGTTGGACGTCCGCCGGTTCCCACTTCTGAataagcaagttttagctacttgtacattaaggtagcgttcagataaaacaaaacaccagcgaagaaactcgacacagagaaacataaaagcCTCCTGCCAGCTAGCACTTGGGAagagttattgcagagcaacacaaacagcatgcagaagtataaatgcacgacgcGCAAGGCAGGCGCTATGGGTCACGGcgatcacttgacacagaagcataaatcagcctttagtcctttgtttatgaggggtcaccacagcggaatgaaccaccaattcaaTAATTCATCTATTGGTATTTACAAATCTCCACTCAATGactgaaatgaatgaatggtaacactttacttgtaGGGGCGTTTATAAGACTGTCgagaaacctttataatcataataTGACACGTTGTGAATGAGATTTTTTGCTTGCTTACGACAACTATTTAGTGTCATTtgctcattttaaatgcaaagatgacattgtttgctATGGTAACTTGACTCTCACTACCAGTCTTCATCTTTGTCGGTaatttgacattaccaagacaacttaacttgtcataaatctgtcacaAGATTGCCATAAggacattataattgtgtcatgtgATCAcattttcagtggaacaaactgtatttgtcaTTGAAATGTCTCAAGTGTCATTACTCtgtcaaatcatttttaacagcgtcattaatatttaatgacattttaattacaaatttgGCTTGAACTGCTGTAATTGAGGTTATATATATACTTTACTAGCAAGACGTCTCTTCCTTTTAAAGTGGAAACACGTCTCTCCACCCTCTTGATGCATGGATAAAAGAAGTGTTTACTTGCATTAGATTGAAAACGGTTATACTATCACTTACTGGCTTTTTAAAGACCTTTGACAAGGTGTGGCGccctttttttagattatttgctGGCTAACTCTCTTGATTATTAAGCTGagcaataatatataaatacatactgaatttataagttttttttcctttcttttttcctttcccctttaaaaatttttattttaattatctttttaCTCATTAATTATGTTTTAGCTTTTCAATGGGAGGTTATGGACTGTTGAGGGAGGGTAATGTTAAATTGGGGTCGTGTTAGCACCAACATGGAaggataattataaaatgaatgttGTAATTGATAATCCATGtagaaaacatatatatatatatatatatatatatatatatatatataatgctgttataaaattcatgacaTGCCTATAATGGCTtcttgacaatcatgtttatgacagatttatgacaggctttgttgtcttggtaatgtcaagttgtcatgacaaagacaaaaacaggttgtgacgtatttgtttatgtcaaattGTCATAACAAAcgatgtcatctttgcatttaaaatgttttaaagggaatgacacttaatgacagttgttataagcatgcataaaatctcattcacattcatgtgTCATGATTTTAAAGGTTTGGTCTTTTGAACACCCCTTCAAGCAAAGTACTACCAAATAAATTTACAAACCCTAGCATTTTACccgatttcattattattattataatattttaaaacaaaatctgtcaatcTCTTCAGCATTTATGATTAAATATGTGATATTGCTTACCTTCGGGTGAGTAAACAAACGCTCAAACCTGTGAGGAGAAACTTGGAAATGATTAGCAACATGACTTTACAACATACCTGCtcctgtttttttcctgggagtctcccgtGTGTCAGACCTatctcccaccaccctcccgttttgttatttctcatggaaaactcctgtaattttaATTCCTCAGGTTTTTGGTACAGTCTATAACACCCCCAGGTCTTTGACATTGGTATAGTTTCCAATCGCAGCGGCTGCCCGAAACCCGGTGCATAGTTACTTAGCTGTGTCATTCAGACACTTCACCCCCGACACTTAGACATCCCCACCACTCCCCCTCTCGGTCTCCcagattttcagagacaaatgttggcaggtatgctcgaCAAGTGGGTCAAAAGGAttgcatttaatatatattttagctaCAGATAGTTTCTATTTAATTGGAAATAACATTCTTACTATCAAGTGTTTAAAATATTCACTTGCACACTTTTTTCCTTGATACAGAAAGTATAAGTATGCACTCCtttttgcaacataggctcattctgaaaacgtaggccTATCAACGTTTCTGAAGATCgcgaattatatagccagaagtacgtatggctgcatttcatttttaaaacgaacgctacggagCTGTATGATGCCGTTTTTTTTCGCATTtactagctgactgcttacctccatatggacggcattccagctgttaccagtttgtctggttagctcACCATATATgtcggtgggcgggtcaatctgtgcttttaaaaattctattggttgggtttagggaaggaggagggtgggtcagtcgatcagtcagtcattcagtcagtcagtcagtcagtcagtcagtcaacagtggctcttggtggatttacatgagaacagcaggcacgaatggcactcgagagagaaatttgagatctcaacaagcatacacagcggcctctggtggattcaagaaaacaaaaactgcaaaaaacaaaaacgtagCTCCAGGGACaaatttggcgctctccagaaatgtatacagaggtacgctttcagaatgagtctgggttgccTTTTTCACAAGTGTAAAATCTGAAATCTACACAGTCATGATAAAATTAGTTCAAACCATCCTCAATCTTTAAGAATTCTGTAATTtcaataaaagtaattataataaaaatcaatCAGAAGTATTACAATTTCATAGTTTTCTCCAAGCATTAATTTTCTCACTCAGCGTTAAATGCCTATTGTAAACATAAATACGTACCTGTCATTAAGTCATCTTTGTTTTGCATTCAGCATGGAATTAAATGCATTGTAAGTGTTAAAAGAGGGTGTAGATGATGCTCAATGCTCTGCTATGAAACACTGTACTCGCAGAAATCTGTCAGTTCTAATAAAATCTGACATTTTGAA

Function

symbol description
rom1a Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 7. Orthologous to human ROM1 (retinal outer segment membrane protein 1).

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1765 Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 7. Orthologous to human ROM1 (retinal outer segment membrane protein 1).

Ensembl:

ensembl_id ENSDARG00000019752

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061252 True 4796 mRNA 0.41 4 67126774 67145505

Neighbor

gene id symbol gene type direction distance location
XLOC_031625 rps6ka4 coding downstream 10902 67079540 ~ 67115872 (-)
XLOC_031624 stip1 coding downstream 302980 66807179 ~ 66823794 (-)
XLOC_031623 fermt3a coding downstream 328045 66755748 ~ 66798729 (-)
XLOC_031622 kat5b coding downstream 377239 66733289 ~ 66749535 (-)
XLOC_031621 mn1b coding downstream 424295 66676356 ~ 66702479 (-)
XLOC_031627 BX897741.1 coding upstream 15937 67161442 ~ 67164419 (-)
XLOC_031628 cdca5 coding upstream 29778 67175283 ~ 67180800 (-)
XLOC_031629 clip1a coding upstream 42740 67188245 ~ 67241633 (-)
XLOC_031630 zcchc8 coding upstream 105454 67250959 ~ 67267707 (-)
XLOC_031631 rsrc2 coding upstream 130383 67275888 ~ 67292690 (-)
XLOC_031620 CU929288.1 non-coding downstream 589440 66537217 ~ 66537334 (-)
XLOC_031616 NA non-coding downstream 882642 66239915 ~ 66244132 (-)
XLOC_031612 NA non-coding downstream 1101830 66022664 ~ 66024944 (-)
XLOC_031608 NA non-coding downstream 1452139 65670605 ~ 65674635 (-)
XLOC_031606 dre-mir-455-1 non-coding downstream 1876300 65250379 ~ 65250474 (-)
XLOC_031644 NA non-coding upstream 819002 67964507 ~ 67972342 (-)
XLOC_031650 CABZ01083943.1 non-coding upstream 1060447 68205952 ~ 68214334 (-)
XLOC_031655 LO017735.1 non-coding upstream 1472453 68617958 ~ 68618089 (-)
XLOC_031656 NA non-coding upstream 1476593 68622098 ~ 68668542 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_05961029_05967003 ROM1A coding CI01000059 null 5960850 ~ 5967089 (-)
bowfin (Amia calva) AMCG00015457 NA coding CM030132.1 CM030132.1 9824915 ~ 9842408 (+)