LOC110490476 (LOC106576353)


Basic Information

Item Value
gene id LOC110490476
gene name LOC106576353
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 59917322 ~ 59922278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563881.2
GAAAACACAATAGGGTGTGGCCAGTCCGACCTGATTCAAAAGCCCTGGCCGGTGCCCACCTCCTCCCCAGGTCCCATCGTTGTGTGACTGTGAAGAGCGATACCCTCCGCTTCACAGTAGACCAATAGGGCTCTTAAGGCGACCGCTAACCCCGTCTTTCGACACTTCTATAGGCTCCAGCCATCACAAAAGTCAGCGACTGTACAGACATGGGTAACGCTACAGGATCCACCGTGGAAGATCTCCAGGCTGTGGAGAAGCACCTCTGGTATAAGAAGTTCATGACAGAGTGTCCTTCGGGTCAGCTCACCCTGCATGAGTTCAAGCAGTTCTTTGGGCTCCGGGGACTGGATGCTGAAGCCAACGCCTACATCGAGCAGATGTTCCGCACGTTCGATATGAACAAGGATGGCTACATAGACTTCTTGGAGTATGTGGCTGCTCTGAGCCTGGTGATGCGGGGTAAAATGGAACATAAGCTCCGCTGGTACTTTAAGCTGTATGATGTGGACGGCAACGGGTGCATTGATCGAAGTGAGCTGCTAAACATCATAAAGGCTATCCGTGCAATCAATGGGAACGAAAACCAGGAAGTTGATGCGGAGGAGTTCACCAACCGGGTGTTTGATAAGATAGATGTCAACGGAGATGGGGAGCTGTCTTTGGAGGAGTTTGTGGCAGGGGCTCACACTGACGAAGACTTCATGGAAGTAATGATGAAGACCTTGGATCTCACCCACATAGTCGCCATGATCCACAATCGGAGGCACAGTGTTTAGAGTCTGCCCTCAGACGCCTCCATCTCCACTCTCCATTGTAATAGACTGCCGAAGGGCCACATAGGAACTGAGCCATGAGCCCTCAAAAGATCTAGCCCAGATTTGTATAAAGACAATCTTTATCTTAGCAATGCTGAAGAGCCATGCTTTGAATGCATTCTTTGTTGTCGGAATTCACAAGAGGTTGAATGACGATGAAAAATTCCCTTTGCCTGCATACAAATAACTCAGTCAACCATCGCTGGCTGGTTAGTGCCCTTGTGCATGATCTAAATCTGAGAGAGGTCTACATGATGAGAGATTTCTCACACCGTCAGCTGAACCGGAGACCCAACTAGGTCATAAAACATAAGGAGGGTGGAGGATAAAGAGGGTGGAGGGAGTGGAGTGGTGACTACCCAAGGTGGTGATTACCCATTATAACCCATGCATTCCtgacaaaaaataaatatatatttttaaatccctCACCCACCTCAGAGGCAGATTCCTGTAGGGAAATTATCATTTCCAAACCACATTGATAATGATGTCTCTAATGATCTTTTGGACCAAACTCAGTTATTCAGTTGAGTGGTTCCTCTCGCTGACTGTGCGTCCGGGTTCTATTGGAGGAAGTTATAATTCACTCACTTTCCTCCCAGTACAGTCAGTTGTCAGCTCAAATATGACTAGAACCCAAGTTCATTCTGTGCCATGACTAAACGTTCCAGTTCCTCAGTAAACAGGTTCTTCCACAAGTTAGGGATCTAAATAACTTAGATACTTGTCACAAAATGcactttgtaaaaaaataaataagaccAGCATGTTTTTACATTGCACTGGCCCCAGTTGTTAAGAAATTAAAGTCAGCATTTTCAGGACATTAATTTGAAGGAATATCTTAACACAACTACATTCTAATGTTTTCCCTACCAGACAGTaaagtgtaaaaaataaattgtgcacatttgtttgtgtttc

Function

NR:

description
guanylyl cyclase-activating protein 1-like

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG:

id description
K08328 GUCA1; guanylate cyclase activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563881.2 True 1745 mRNA 0.46 4 59917322 59922278
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Neighbor

gene id symbol gene type direction distance location
LOC110490472 cl031 coding upstream 40580 59874840 ~ 59876742 (+)
LOC110490468 acss3 coding upstream 367645 59518022 ~ 59549677 (+)
LOC110490466 LOC106576326 coding upstream 448084 59466597 ~ 59469238 (+)
myf6 LOC100136544 coding upstream 457360 59458488 ~ 59459962 (+)
rps16 rps16 coding upstream 493006 59420259 ~ 59424316 (+)
lhfpl3 lhfpl3 coding downstream 13348 59935626 ~ 59977759 (+)
LOC110490480 LOC106576359 coding downstream 102785 60025063 ~ 60026611 (+)
LOC110490772 LOC104968060 coding downstream 129717 60051995 ~ 60059547 (+)
LOC110490485 LOC106609495 coding downstream 585101 60507379 ~ 60520609 (+)
LOC110490488 LOC106576423 coding downstream 921546 60843824 ~ 60926356 (+)
G1313164 NA non-coding upstream 2531 59913707 ~ 59914791 (+)
G1313162 NA non-coding upstream 7050 59909875 ~ 59910272 (+)
G1313158 NA non-coding upstream 13411 59903675 ~ 59903911 (+)
G1313155 NA non-coding upstream 15868 59901227 ~ 59901454 (+)
G1313154 NA non-coding upstream 16253 59900846 ~ 59901069 (+)
G1313170 NA non-coding downstream 4364 59926642 ~ 59927043 (+)
G1313201 LOC106609379 non-coding downstream 58821 59981099 ~ 59982633 (+)
G1313202 LOC106609379 non-coding downstream 61585 59983863 ~ 59984211 (+)
G1313203 NA non-coding downstream 63555 59985833 ~ 59987272 (+)
G1313163 NA other upstream 4454 59911208 ~ 59912868 (+)
G1313161 NA other upstream 8036 59908570 ~ 59909286 (+)
G1313160 NA other upstream 10030 59906979 ~ 59907292 (+)
G1313156 LOC106609404 other upstream 15119 59901652 ~ 59902203 (+)
G1313050 NA other upstream 215973 59696215 ~ 59701349 (+)
G1313204 LOC106576014 other downstream 62051 59984329 ~ 59984908 (+)
G1313177 LOC106609379 other downstream 78378 60000656 ~ 60001871 (+)
G1313256 NA other downstream 176509 60098787 ~ 60100927 (+)

Expression

LOC110490476(LOC106576353) Expression in all Baseline Samples

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LOC110490476(LOC106576353) Expression in each Bioproject

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LOC110490476(LOC106576353) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
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Co-expression Network