LOC110490772 (LOC104968060)


Basic Information

Item Value
gene id LOC110490772
gene name LOC104968060
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 60051995 ~ 60059547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490772
ATGGTGGTGTATGAAGGGAGGACGTGGAGAGTGGTCCTGAAGATGAGGTGTCTGTACAGGAAGAAAGCCCTGAGTCTGGTTAAGGAGCTGGATGCCTTCCCCAAGGTCCCAGAGAGCTATGTCGAGACCACAGCCACAGGGGGGACAGATGTGGGTCCAGACATTCTGGACCTGGCAAAGACTATGATAACTGTGGCATTCAGTATGAGCCTGACCCTGCTGATACAGAACAGGTTGAGGGAGGAGCTTTCTCTACAGGAGTCTTCTGGGTTTCATCAATGCATTTCAGCGTACGACTTCTCCCATCGGATAGACCATGTGTCTTTCGGAGAAGAGATCCCCGGCATCATCAATCCTCTGGACGGGACAGAGAAAATCACCAGCAACCATAATGAGATGTTCCAGTATTTCATTACGGTGGTTCCTACCAAACTGCACACGTCCAAGGTGTCGGCAGACAAACACCAGTTCTCTGTGACGGAGAGGGAGCGGGTGATCAACCATGCGGCGGGCAGCCACGGTGTCAGGGATCTTTATGAAGTACGACACCAGCTCTCTGATGGTGACGGTCAGTGAGCAGCACATGCCCCTCTGGCAGTTCCTGGTACGACTCTGTGGCATCATCGGGGGTATCTTCTCCACCACAGGCATGATCTATGGGTTTGTTGGCTTCTGTTTTGACAGTCTGCTGTCGCTTCAAACTAGGCCCATATAAACCCAGAGAGGTGGTTCTCCCAGATGCCCATGTGAACAACCGTGCTGCTCCGCTCCTGACACGTACAGGAGTAGCCCTCTGACCTGCGCCCATATCCACAAAGCtctctgagtaggagtgctgagcTTGGATCAGTTTCACCCTTTTGGATCATAAGATAAtattatatggacagatcctagatcagtattCCTACTGTGAGACGCTTTGTGGATATGGGACCTGGAGCCTGCTGCTGATTGTGCACCTACTGTCCCTTCACCTGTGGGGAAATCCAGGAAGAGAAGTCTCCAATCACAAGTATGTGGATTACTGGGAGTTTGGTTTGAACCAAATAAGAGTAAACTGATTAGGATCCGACAATCATAATTGTTCTATTCATTGTTTTGGACAGTATCCTCATGACCACCATTAAAATATTTATATCCTGTAAATAACTATTTTACACTGGAAAATGGAAAGCAGCTAACTCCCCAGTTTTATCAGGCTTAGTGTGTGAAGGTATTGGGACATTGTCATCTGTAAGTTAGGCTGAATGAAATCTGATCCTCCTATGTTATCATTCATACCATTAACTTGCATGTCATGTTTGTTCTATTTCTATCTATTTGCACTGTTGTTCAGTGTCTGTTTCACATCTGTCAATGGGAGATGTCCTATTACATATGTTTTAGTGCACTTCATTACTTCATGTTGTACACTTTACATTCATTTAAATCTCTCTCGTTTGGTATCCCACTATCTTCTGGTGATGGTGTGTGCTCTTAGCCTGCGCTTACACAAGCAGTCCATTTtggatcttttgaccaatcacatcacatcttTTCACGTCCAATCTTTTCAGATCTGATTGGGCAAAAGACCAATTCGTTTttaaaaagatcagaattgggctgcctgtataAACGCAACCATGGAAGTAGGCTAAATCTATTTTCTACATGAGGCAGCAGTGTATGAAGCAGAATGATTAGCACACTGACCAATTTGTCTTTTGGTTTATTCCTGTTTTGCCAAACAAATGTTAAGTGTTTTCAGAGCAGGAATAGAGGGTCATTTAACATTTGCCAATTTACATTTGAAAAAGGAAAATTCAACAAAATAAACAAAGTCGTAAGTGTT
>TU1498192
CCATTAACTTGCATGTCATGTTTGTTCTATTTCTATCTATTTGCACTGTTGTTCAGTGTCTGTTTCACATCTGTCAATGGTTTTAGTGCACTTCATTACTTCATGTTGTACACTTTACATTCATTTAAATCTCTCTCGTTTGGTATCCCACTATCTTCTGGTGATGGTGTGTGCTCTTAGCCTGCGCTTACACAAGCAGTCCATTTtggatcttttgaccaatcacatcacatcttTTCACGTCCAATCTTTTCAGATCTGATTGGGCAAAAGACCAATTCGTTTttaaaaagatcagaattgggctgcctgtataAACGCAACCATGGAAGTAGGCTAAATCTATTTTCTACATGAGGCAGCAGTGTATGAAGCAGAATGATTAGCACACTGACCAATTTGTCTTTTGGTTTATTCCTGTTTTGCCAAACAAATGTTAAGTGTTTTCAGAGCAGGAATAGAGGGTCATTTAACATTTGCCAATTTACATTTGAAAAAGGAAAATTCAACAAAATAAACAAAGTCGTAAGTGTTGCAGTTCACAGAACACTTCCCAGTTAGCACTGATCTACCCACAGTGCTCTGCTTCCACTATGTATCATAACAAAGACACTGCTTTGTTATCAACATGACAGATGCCAAGATCCATAAAAAGCAGGACATTTTGTTCAACTTCATTGTTGGGCATGCATTTGGTTCATAGTCCCTTACTGAATTTAGGAAAGGACAGTCACTATTGTTGCACAGCATTACTGGCTcacataaaaacatgtttttccagAGGGAGGATTTGAGGTACATTTAGTCAAGACTTCTACCattgatactgtatatagatgtatCATCTCATTAAAAAATGGACTGCTGCTGTCTGCCACAAGTAACACTTCAGATCTAGTCTGGGGAGCTCTGTGGTAGAGTCAGACTCCTGCAGAATCAACCCTCAAGAATACTACTCGTTTAAGTCGTCTAGAAAAATAATATAGAACTATTTACACATCTTCTAAACTTGTTTTATATATGATACTGTCaccatctacagtgcattcggaaagtattcagaccccttgacttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490772 False 1837 mRNA 0.38 9 60051995 60059004
TU1498192 True 1077 lncRNA 0.38 2 60058451 60059547
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110490480 LOC106576359 coding upstream 25610 60025063 ~ 60026611 (+)
lhfpl3 lhfpl3 coding upstream 77320 59935626 ~ 59977759 (+)
LOC110490476 LOC106576353 coding upstream 129717 59917322 ~ 59922278 (+)
LOC110490472 cl031 coding upstream 175253 59874840 ~ 59876742 (+)
LOC110490468 acss3 coding upstream 502318 59518022 ~ 59549677 (+)
LOC110490485 LOC106609495 coding downstream 448375 60507379 ~ 60520609 (+)
LOC110490488 LOC106576423 coding downstream 784820 60843824 ~ 60926356 (+)
LOC110490491 LOC106576442 coding downstream 946633 61005637 ~ 61009062 (+)
LOC110490492 LOC106576422 coding downstream 954668 61013672 ~ 61016317 (+)
LOC110490775 LOC106576441 coding downstream 957416 61016420 ~ 61023858 (+)
G1313220 NA non-coding upstream 29343 60022016 ~ 60022652 (+)
G1313221 NA non-coding upstream 30509 60021176 ~ 60021486 (+)
G1313218 NA non-coding upstream 37434 60014358 ~ 60014561 (+)
G1313217 NA non-coding upstream 38847 60012819 ~ 60013148 (+)
G1313216 NA non-coding upstream 39610 60011138 ~ 60012385 (+)
G1313246 NA non-coding downstream 13617 60072621 ~ 60137805 (+)
G1313251 NA non-coding downstream 21918 60080922 ~ 60083731 (+)
G1313252 NA non-coding downstream 26768 60085772 ~ 60093299 (+)
G1313424 LOC106609492 non-coding downstream 365442 60424446 ~ 60425029 (+)
G1313429 NA non-coding downstream 375473 60434477 ~ 60434702 (+)
G1313177 LOC106609379 other upstream 50124 60000656 ~ 60001871 (+)
G1313204 LOC106576014 other upstream 67087 59984329 ~ 59984908 (+)
G1313163 NA other upstream 139127 59911208 ~ 59912868 (+)
G1313256 NA other downstream 39783 60098787 ~ 60100927 (+)
G1315004 NA other downstream 1447180 61506184 ~ 61506590 (+)
G1315081 NA other downstream 1500576 61559580 ~ 61559958 (+)
G1315251 NA other downstream 1776442 61835446 ~ 61836074 (+)
G1315291 NA other downstream 1828060 61887064 ~ 61912414 (+)

Expression

LOC110490772(LOC104968060) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110490772(LOC104968060) Expression in each Bioproject

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LOC110490772(LOC104968060) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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Co-expression Network