LOC110490503 (LOC106609511)


Basic Information

Item Value
gene id LOC110490503
gene name LOC106609511
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61179208 ~ 61187540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563925.2
TTACGTGGAGTGAGAGCATTATGTATTTAATGCGTCCATTCCCGGAGTAACGTTAATTGGGTGTTTTACTATTTATAGGGTGGGTTCGAGGTCGAAGATGTTTGGACGGAGACGAGCAACGCTTACCAAACCCTTGTACTGATAGTCTTGTTAAATATCAGAAATAGTTGTCATTGACTCAAGTCTTATTTTCTCCATACACCGTCCGTGTTTAATGTGTGAAGCTAGTTCACGCTAGATCGCTAGTACCGAACGTCGAGTCTTTCCCCTCATCCCGTAGCAAAATTTACGGACCTAAATTCTGTCATATTGGAGCAGGGCTAGGCAGCTAGCCTAGCCATCAATTGAATCTGGAGCAGGATACAGAGGATAGTATGGCCATGACGGGAGGGACTGCAGCTGCCCTTCCCATGAGCAACCACACCCGGGAGAGGGTGACCGTGGCCAAGCTGACAGTGGAGAACTTCTACAGCACTCTGCTGACACAACACGAGGAGCGAGAGACGAGGCAGAAGAAGCTGGAGAAAGTCATGGATGACGAAGGCTTGATAGATGAAGAGAAGGTCATGCGACGCTCCCAGCACGCCAGGAAGGAAACAGAGTTCCTGCGGCTGAAGAGGACCCGGCTGGGCCTGGATGACTTTGAGTCACTAAAGGTCATTGGTCGAGGTGCCTTTGGAGAGGTCCGCTTGGTGCAGAAAAAAGACACCGGGCACATATATGCCATGAAGATCTTGAGGAAAGCTGACATGTTGGAGAAGGAGCAGGTGGCTCATATTCGGGCAGAGAGGGACATCTTGGTGGAGGCGGACGGGGCCTGGGTGGTTAAGATGTTCTACAGTTTCCAGGATAAGAGGAACCTCTACCTCATCATGGAGTTTCTACCTGGAGGTGACATGATGACCCTGCTGATGAAAAAGGACACCCTGTCTGAAGAGGCTACCCAGTTCTACATAGCTGAGACTGTCCTGGCCATCGACTCCATCCACCAGCTGGGCTTCATCCACAGAGACATCAAACCTGATAACCTGCTTCTGGACTCCAGGGGCCATGTAAAGCTGTCTGATTTTGGTCTGTGTACGGGGCTGAAGAAAGCCCACCGTACAGAGTTCTACAGGAACCTCACACACAACCCTCCCAGTGACTTCTCTTTCCAAAACATGAACtcaaagagaaaagcagagacCTGGAAGAAGAACCGGAGGCAACTGGCCTACTCCACAGTGGGAACACCAGACTACATTGCCCCAGAGGTGTTCCTGCAGACGGGATACAACAAGCTCTGTGACTGGTGGTCTCTGGGGGTCATCATGTATGAGATGCTGATAGGGTACCCCCCGTTCTGTTCTGAAACACCCCAGGAGACGTATAGGAAGGTGATGAACTGGAAGGAGACCTTGGTCTTCCCCCCCGAGGTGCCCATCTCAGAGCGGGCCAAGGACTTGATTCTCAGGTACTGTAATGACGCTGAGAACCGTGTTGGTGCTGTGAGCATTGAGGAGATGAAGAGTCACGCCTTCTTTGAGCCTGTGGACTGGGAACACATCAGGGAAAGACCAGCCGCCATATCCATTGAGATCAAGAGCATTGATGACACATCGAACTTTGATGAGTTCCCAGAATCGGACATCCTTCAGCCAGTTTCCAACGTGACAGAGCCAGACAAATCGAAGGACTGGGTGTTCCTGAACTACACCTACAAGAGGTTTGAGGGGCTGACTCAGCGAGGCACCATCCCCACATACATGAAGGCAGGGAAGGCCTGAGATGAGGAGGGAAATGGGAGAGACAATGTGGACACAGGGTTGGGCGTTAAACCCCTGCTGTGCTGAAAGCACAGGATCAAGAATGATGAGGAGGTTCTTGGTTTCATGCTTCACTGGGGTTTTCCTGTTTGGTCACCATCCATTGGGGCACCAATGGCAAGAGGAACAGGGATATAAATAATACATGTATCGTCTTAGGCCTTGCTTGGGCTGTTAAAGGGGAAGTTTGTTTTACAACTTAATGTTCGATGGTCACTCAACCTGAAAAAACTGAACTTCCCCTTTTGAAATGACTACTACTAGGTGACTAAATCAATGTGCCGTTCCTCTACCCAGGCGTTGCTGAAGTGTGCCAGATCTTACAACACTTGGATAGGTATTTTACCTATTGGCTAACCacatgttatagcaatctggtgtAGTCGATGACGAGATATGCAACGTTTGAGCAGGGGAACGTGACCATCATATCTGCATGTTTACACACTGATTTGCAGGGTCTAAAACACTGTAGAAGGACTGCCCCACACACAGGGTATTTGTTGAGGGTTATCCTAGTGTCCTCATATGACTGAAGAAAAATGAATATAGTTAATGTTAAGTAAACGTGGTTTGCTAAACTTGTAGGTATAAAAAGTTCTAACGTTTCAAGTCTTTTATGGGTGCCATGTTAGCCAAAAAGTTTCATTCTAGTTACAATGTAATCCTTCTGTCATGGTGAGCCATCCATACATGGATTAATCCCAGAGCCATAGATACATTGGTGTCTATTTAATGCCTTGATAATCTGGAATTAATATCTCTAAATTATTTCATGGTGTCAAAGATGCATAGAAAAGTGTCTTCTTCTAGTGGTTGAAGTAAGAAACGGTCATGTAGAATCAGATTCGTTTTTGCAAGTTAGAGGACGAGTCATGGATGTCAATGACAATTCAAGGCTACTAATACTTAAAGGTAGCAATATGATGCAGAAAGTAGACGGCGTATTGGGTCCatttccgcaacaactaagagTGTTGAAGCGTGATACTCAACTTCTCTGCTTTTTTGGTCTCGTGGCTACCACGCTGTATACGGTATGAAGCGcagatgctgtgtgtgtgactgcgagAGCGCAATGTCTTGCATCTCGCTCATATcaatatctgcggtgctgctcgtggcaatGTCATTTCGCTTAGTCTAATTTTACAGTAATTACATTTCTGTTCAACTTTATTGACAAAGATGGCGCCTTTTTATATTTTTAAGAACATCGGAAATCATGTTTGATCTTCACATCGCTCCCCAAAATGCATCCATTTAAATTAGGAACTACATTTAATTAAATGTACTTTTTTATAGTCACCCTTTAGTGAACACCCGCTGTGTGTGATCGATATTCAAATTTAGGAGTCAAACATTTTCAGCGACTCTGATTTAGTTGTGCAGAGGTGGTCAGCACAACTTGCATATCCAATCAACTAAATTCATGTAATGTTGTCCTGGCTATCTGGCACAGGTCAAAGTTCAAATGCTTTGATCTGGAGCAGGTGTAAATTCAATGTATCAAATTATTTATTTTGATAATGAACAAATTGATAGATCCCCAAATGTTTGCAGTAGTAAACACACCACAAATTAGGGTGCATCATGTGTTAATGACGAATGAAAGTGTTGATGACTAAAACGAAATACCTAAAATACAACAATGCAGAAAATACCCATAGACTTCGttattgcgctaacgctagttagcattaacTTGGGAAACTACCTCTAAGTACcgtcatactggacacagacctAAAAAGGGTAACCAGgacttcatctgactctggggaagtagataaagggcctcatttcCAAAATcctaaagtatccctttaacttgTAAATGATTCAAGAAgggaaataaaaacatttatgtAACTAA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase 38-like

GO: NA

KEGG:

id description
K08790 STK38, NDR; serine/threonine kinase 38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563925.2 True 3681 mRNA 0.45 13 61179208 61187540

Neighbor

gene id symbol gene type direction distance location
LOC110490501 LOC106609509 coding downstream 2161 61143787 ~ 61177047 (-)
LOC110490500 NA coding downstream 46678 61124665 ~ 61132530 (-)
LOC110490499 NA coding downstream 62104 61107113 ~ 61117104 (-)
LOC110490496 LOC106609505 coding downstream 98604 61075775 ~ 61080604 (-)
LOC110490497 NA coding downstream 108193 61068308 ~ 61071015 (-)
LOC110490506 med21 coding upstream 830 61188370 ~ 61194701 (-)
LOC110490502 LOC106609510 coding upstream 11645 61199185 ~ 61209954 (-)
LOC110490507 LOC106576413 coding upstream 29618 61217158 ~ 61248945 (-)
LOC110490511 s38a2 coding upstream 127394 61314934 ~ 61326504 (-)
LOC110490512 LOC106609518 coding upstream 171456 61358996 ~ 61389047 (-)
G1314798 LOC106576442 non-coding downstream 84571 61005663 ~ 61094637 (-)
G1314799 NA non-coding downstream 88769 61087935 ~ 61090439 (-)
G1314792 NA non-coding downstream 184888 60989032 ~ 60994320 (-)
G1314773 NA non-coding downstream 233301 60944769 ~ 60945907 (-)
G1314727 NA non-coding downstream 338600 60840341 ~ 60840608 (-)
G1314876 NA non-coding upstream 39023 61226563 ~ 61290216 (-)
G1314961 NA non-coding upstream 219341 61406881 ~ 61407809 (-)
G1314967 NA non-coding upstream 234271 61421811 ~ 61422016 (-)
G1314969 NA non-coding upstream 237553 61425093 ~ 61426132 (-)
G1314304 NA other downstream 406720 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 1754901 59420247 ~ 59424344 (-)
G1312023 NA other downstream 2487826 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 2550378 58627298 ~ 58684968 (-)
G1311995 NA other downstream 2658629 58519957 ~ 58520579 (-)
G1315398 LOC106609523 other upstream 422880 61610420 ~ 61612116 (-)
G1315509 NA other upstream 647086 61834626 ~ 61836573 (-)
G1315519 NA other upstream 677490 61865030 ~ 61891421 (-)
G1315518 NA other upstream 705131 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 855230 62042770 ~ 62056023 (-)

Expression


Co-expression Network