XLOC_031629 (clip1a)


Basic Information

Item Value
gene id XLOC_031629
gene name clip1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 67188245 ~ 67241633 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061255
CCACAAAGACAGCAACATTATACTAAATCTCAAAAAGGAGTGTGACCGTCTAAATGAACAACTGAAGGAGGCgaaaacaagGGAAAGCAGTTTCAGAAGTGAATCTGAAAAGGAGAAAGCAGCACTTCAGCAGACACTACAGACGCAGAGCGGCTTGGTCTCAGAAAAGGACAAGGAATTAAACTCTCTGAGAAATGAGCTGGATGCTCTAAAACAGCAGAACTCTCAGTATCAGGAGAGTTTGAGTTCTGACAGTGAGAGAATTAACAGCCTCAGTAAAGAGATTGAGGAGTTGAAACAAGCCGCTGTCGAGAAATCCCAGGCAGTGGACGATCTGAAAAATGAGAAGGAAAAGCTAACCATGGATCTCGCCAACAGCCTCAAAGACAGCAACATACTGCTAAATCTCAAAAAGGAGTGTGATAACCTCAACGATCAGCTGAAGGAGTTGAAGAAGAGGGAAAGCACTTTAACAAGTGAATCCGAAAAGGAGAAAGCAGCGCTTCAGCAATCTCTTCAAACCCAGAGTGCCTTGATCTCAGAAAAGGACAAAGAGCTAGACTCCGTGAGAAACGAGCTCAAAAAGGAGCGTGACAGCCTCAACAGTCAGTTGAAGAAGATGGAAATGAGGGAAAGCACTTTAACGAAAGAAACGGAAAAGGAGAAAGCAGCACTTCAGCAATCTCTTCAAACCCAGAGTGCCTTGATCTCAGAAAAGGACAAAGAGCTAGACTCTATGAGAAACGAGATGGGTGGTCTGCGGGATCAGACACAGACGCTGCAGTCCAGTCTCAAATCTCAAAAGAGTGAGAATATTCAGCTTCAGGAGCGACTGAAGGGTCTGGAGAGGAGTTTAGCCGACGCTCAGATCCCCAGCAAAGGAGATAACGCCTCAGATGATTCTGCCTTAAGAATGTGGAAGGAGGCAAAGGAGAATGCCGAGCATCAGGTTGAGTTCCTGAACTCGGTCATTGTGGAACTGCAACGGAAGAATGAAGACCTAAAATCTAAGCTAGAGAAGATGGCCGAAGCAGCGCTCAATGGAAACGGTGCAGCTGAAATGGACAGCCGTAACAACAgTCACACCGAGCCGGCGATTAAAAAGAAGCCTCCTCCCCGTCTCTTCTGTGACATTTGCGACTGCTTTGACCTGCACGACACTGAAGACTGTCCCACCCAGGACCAGATGGAGGATTCCCCGCCGCACACCACCTACCACGGCAGTCCCAATGACGAAAGACCATACTGCGACATCTGTGAGGTGTTCGGCCACTGGACAGACTCCTGCAACGACGATCAAACTTTCTAGGGTCGCTTCCATGATCCCGCAGCATTTACACATGCAATACTATGCCTTGAATCAAAG
>TCONS_00061256
ATGAGTACCTCAAAGCCCAGTGGACTAAAAGCACCCAGCAAAATTGGTCGACCAGCCAATACTGGGCCCACGAAGACGTCACCTTCTGCTGGTGCTTCAAAAGCAGCTCAAAGTGACAAATCCTCAGCTGAAGCTCCAGATGCAGGAGAGCAGTTCAAGGTTGGGGATCGTGTCTGGGTAAACGGCAACAAACCTGGCGTAGTTCAGTTTTTAGGAGAGACGCAGTTTGCTCCGGGGCAGTGGGCTGGCATTGTGCTGGATGAGCCGATCGGGAAAAATGACGGCTCGGTGTCAGGCGTGCGTTATTTTCAGTGTGAAGCGTTAAGGGGTATTTTCACACGTCCTTCCAAGCTCTCAAGCACAGAAGGTGAAGCGGACGGTACGACAACAGCTCCTCCGTCCCGTGCTGCTTCACCCACCCCATCCACCACATCAGTGTCCGCTTCATCCAAGAAACCAGCATCACCCACTAAAGCTGCAGCACCAACCTCAGATCTGGTGCGGTCCAAAAGTGAGTCGGTGTCCAATCTGTCCGAGAGCGGTTCTGTCAAGAAAGGGGAACGGGAGCTGAAGATCAACGATCGAGTGCTGGTTGCTGGCTCAAAAGCTGGCGTGGTGCGTTTCTTAGGGGAAACTGATTTTGCCAAGGGTGAGTGGTGTGGAGTTGAGCTGGATGAGCCCTTGGGGAAGAACGATGGAGCTGTGGCTGGAACCAGGTATTTCCAGTGTCAGCCCAAGTATGGTCTCTTTGCACCAGTGCACAAGGTGACCCGTATAGGTTTTCCCTCCACTACCCCAGCAAAGGCAAAAACCACTGTGCGGAAGACGACCGCCACCACCGCCGCCACTCCGTCAGCACTGAAGCGCAGCCCGAGTGCCTCCTCCATCAGCTCCATGAGCTCTGTAGCCTCTTCTGCTAGTTGCAAGCCAAGCCGTACAGGACTGCTGACAGAGACGTCCACGAGGTATTCGAGGAAGATCTCGGGAACTACAGCGCTTCAGGAGGCCTTGAAGGAGAAACAGCAGCACATCGAGCAGCTCCTGGCAGAGCGGGACCTGGAGAGAGCAGAGGTTGCCAAGGCAACAAACCATGTGGGCGAAGTGGAGCAGGAGCTTACATTACTGAGAGAAGGCCAGGAGCAGTATGCTTCAGAGGTCAATGACAAAATGGACCAGCTGCGAGCGCTGGTGGAGGCAGCAGACCGAGAGAAGGTGGAGCTGCTCAACCAGCTGGAGGAGGAGAAGAGGAAGGTGGAGGACCTGCAGTTTCGAGTGGAGGAGGCTTGCATTACCAAAGGAGATTTGGAGACGCAGACGCAGCTGGAGCATGCCCTCCTTAAGGAGCTTGAACAGAGTCTTCTCTTTGAAAAGACCAAAGCTGAGAAGCTCCAGAGGGAGTTAGAAGACTCTAGGGTGGCCACAGTCTCAGAGAAGTCCCGCATTTTGGAGTTGGAGCGGGATCTTTCTATGAAGGACAAGGAGTCGGCAGCTCTCCGCAAGTCATTGGAAGCGTTATCAAGTCAGGATGGGGTTTGTGACTCTGCCGTGGCCGCTCTGCAGGAGCAGCTCAGTTTGATCCGTTCCCAGCAGGCCGAGCAAAGCCACAGTCACCAAGCAGAGCTGTCCTCCATGCGCGAGAAGCTTGAGGCGCAAGAAAAAGCACACCGTGAAGCCCTGATGCACCTCCAGGCCTCCTCAAGTCGCCTATCTAAGGATAACGAGCAGCTTTTAGCTGAGCTTGCAAAATCGAAAGAAGAAAACTCGAATGTTGTTGAGCAGTGGAGCGATAAACTCAAATCCGTTGAGGCTTCACATCAGCAAGCTTTGGAGGAGCTCAAAACCTCCCGTGAAGCAAGCAAAGCTGAATTGTCGGATGCTCTGGAACGGCTAAAATCAACACATAAGCTGGAGTTGGAGGAGCTCGCTAAGAAACATTCCTCTGAAGCAGCGGGATGGGTGGGTGAAGGTATGGAGCATAAAGCACAGCTTCTGAAAGTCGCCGAAGAGAATGAACGGCAGGTAGAAATGCTCCGCAGCAGTCTGGAGAAGGCCGAGGAGCAGCACCTAGTGGAGCTGGAGGACGCCATGGGGAAGCTTCATGCCGCGGAGCTCAGGGTCAAAGAGCTGGAGGACAGCGGAGTCAAGATAAGCGAGCAGTTAAAGGAAAAGGTGCAAGAAGCTCTCGAGCAAAGTGAAGCTCTTCAGTCTCTGCAGACACAGCACAGTCAAGGAAACCAGGAGATGCAGAGGTTATTGAGCCAAGTGGAGGAGGCGAAAAGCAAAGCCAGATCTCAGGAAGAAAAGGTCACTGAGTTGAATTCAGTACTAGAGGTTAAACAGCAGGAGTTGAGTGGCCTGTTGCAGGAAAAGAGCTCTTTGGAGCAAGAAGTTAGCCTGCTGAAGCAGAATCTTGAAAAAACGACGAACGATCAAGCCAAATCATCTCAGACAAATCAAGAGTTACAAGAAGAGCTCAGGAATAAGGAGGACAAATGCACATCACTTTCTGCTGAATTACAGGACACGAAGAGTCAACTTGCTGgtTTACAAAGAAGTTTAAAAGCAAGTGAGGAGAGGTGTCTGCTGCTGACCAAAGACAAGACTAAACTTGAGAATGACATTATGGACATGACAAAGTCTTCAGGAGACAGTTCTACACTCATAACAAAGCTGAATGAGGAAAACAAGCGGAAAGAGGGGAGGCTGGAGGAGCTTCAGAAGCAGcttgaagaggagagagagaaaacCGCTCAGACTGAGGAGAAACTGTCTCACACACGAGTCCAGACTGAGAATGAAGCCAAAAGCCTCATGCAGAAACACCAGGCAGAGCTTGCCAACCTACAGGAGAAGATCAAACTGCTGGAGAAGAGCATCGAAGACAATCATGCTAAAGCCAAAGACCTGCACGCTTCAGGAGAGAAAGCGCTTACAGATGCTGCGGAGCTCCATTCAAAAGAAAAGCAGGAGTTGCAGAGCAAGTATGAAAAAGTGCAGCAGGAGCTCAGCGCCTCTCAGAATGAAAGCCTGGAGCTGAGGAAACAGATTGAGGAGCTGATGACCTTCAAAGAAAAAACTGCGGTCTTAGAGAAAGCAGAAGAGGCTGCCCGGGCCTCACTGGAGAAGATGACCCAGGACAACCTTCAGCTTCAGAAAGACAAGTCTGACTCTGAGGCTCAGGTGACGGCGCTCAGGAACACAGTGCAGGAAATGCAAAGCAAGcTGGATGCTCTAAAGCAGCAGAACACTCAGTATGAGGAGAGTCTGAGTTCTGATGGTCAGAGGATCAGCAGCCTCAGTAAAGAGATtgaggATCTAAAACAAGCAGTCGCTGAAAAATCCCAAGCAGTAGATGATTTGAAGAATGAGAAGGAGAAGCTTGTGGTGGATCTTGCCAACAGCCACAAAGACAGCAACATTATACTAAATCTCAAAAAGGAGTGTGACCGTCTAAATGAACAACTGAAGGAGGCgaaaacaagGGAAAGCAGTTTCAGAAGTGAATCTGAAAAGGAGAAAGCAGCACTTCAGCAGACACTACAGACGCAGAGCGGCTTGGTCTCAGAAAAGGACAAGGAATTAAACTCTCTGAGAAATGAGCTGGATGCTCTAAAACAGCAGAACTCTCAGTATCAGGAGAGTTTGAGTTCTGACAGTGAGAGAATTAACAGCCTCAGTAAAGAGATTGAGGAGTTGAAACAAGCCGCTGTCGAGAAATCCCAGGCAGTGGACGATCTGAAAAATGAGAAGGAAAAGCTAACCATGGATCTCGCCAACAGCCTCAAAGACAGCAACATACTGCTAAATCTCAAAAAGGAGTGTGATAACCTCAACGATCAGCTGAAGGAGTTGAAGAAGAGGGAAAGCACTTTAACAAGTGAATCCGAAAAGGAGAAAGCAGCGCTTCAGCAATCTCTTCAAACCCAGAGTGCCTTGATCTCAGAAAAGGACAAAGAGCTAGACTCCGTGAGAAACGAGCTCAAAAAGGAGCGTGACAGCCTCAACAGTCAGTTGAAGAAGATGGAAATGAGGGAAAGCACTTTAACGAAAGAAACGGAAAAGGAGAAAGCAGCACTTCAGCAATCTCTTCAAACCCAGAGTGCCTTGATCTCAGAAAAGGACAAAGAGCTAGACTCTATGAGAAACGAGATGGGTGGTCTGCGGGATCAGACACAGACGCTGCAGTCCAGTCTCAAATCTCAAAAGAGTGAGAATATTCAGCTTCAGGAGCGACTGAAGGGTCTGGAGAGGAGTTTAGCCGACGCTCAGATCCCCAGCAAAGGAGATAACGCCTCAGATGATTCTGCCTTAAGAATGTGGAAGGAGGCAAAGGAGAATGCCGAGCATCAGGTTGAGTTCCTGAACTCGGTCATTGTGGAACTGCAACGGAAGAATGAAGACCTAAAATCTAAGCTAGAGAAGATGGCCGAAGCAGCGCTCAATGGAAACGGTGCAGCTGAAATGGACAGCCGTAACAACAgTCACACCGAGCCGGCGATTAAAAAGAAGCCTCCTCCCCGTCTCTTCTGTGACATTTGCGACTGCTTTGACCTGCACGACACTGAAGACTGTCCCACCCAGGACCAGATGGAGGATTCCCCGCCGCACACCACCTACCACGGCAGTCCCAATGACGAAAGACCATACTGCGACATCTGTGAGGTGTTCGGCCACTGGACAGACTCCTGCAACGACGATCAAACTTTCTAG

Function

symbol description
clip1a Predicted to enable microtubule plus-end binding activity. Acts upstream of or within positive regulation of microtubule polymerization. Predicted to be located in microtubule. Predicted to be active in cytoplasm; microtubule plus-end; and nucleus. Orthologous to human CLIP1 (CAP-Gly domain containing linker protein 1).

GO:

id name namespace
GO:0031116 positive regulation of microtubule polymerization biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0035371 microtubule plus-end cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051010 microtubule plus-end binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-282 Predicted to enable microtubule plus-end binding activity. Acts upstream of or within positive regulation of microtubule polymerization. Predicted to be located in microtubule. Predicted to be active in cytoplasm; microtubule plus-end; and nucleus. Orthologous to human CLIP1 (CAP-Gly domain containing linker protein 1).

Ensembl:

ensembl_id ENSDARG00000078722

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061255 False 1366 mRNA 0.47 13 67188245 67204202
TCONS_00061256 True 4710 mRNA 0.50 30 67188302 67241633

Neighbor

gene id symbol gene type direction distance location
XLOC_031628 cdca5 coding downstream 7445 67175283 ~ 67180800 (-)
XLOC_031627 BX897741.1 coding downstream 23826 67161442 ~ 67164419 (-)
XLOC_031626 rom1a coding downstream 42740 67126774 ~ 67145505 (-)
XLOC_031625 rps6ka4 coding downstream 72373 67079540 ~ 67115872 (-)
XLOC_031624 stip1 coding downstream 364451 66807179 ~ 66823794 (-)
XLOC_031630 zcchc8 coding upstream 9326 67250959 ~ 67267707 (-)
XLOC_031631 rsrc2 coding upstream 34255 67275888 ~ 67292690 (-)
XLOC_031632 mlxip coding upstream 74183 67315816 ~ 67349916 (-)
XLOC_031633 unga coding upstream 109586 67351219 ~ 67365750 (-)
XLOC_031634 si:dkey-251i10.2 coding upstream 221394 67463027 ~ 67471375 (-)
XLOC_031620 CU929288.1 non-coding downstream 650911 66537217 ~ 66537334 (-)
XLOC_031616 NA non-coding downstream 944113 66239915 ~ 66244132 (-)
XLOC_031612 NA non-coding downstream 1163301 66022664 ~ 66024944 (-)
XLOC_031608 NA non-coding downstream 1513610 65670605 ~ 65674635 (-)
XLOC_031644 NA non-coding upstream 722874 67964507 ~ 67972342 (-)
XLOC_031650 CABZ01083943.1 non-coding upstream 964319 68205952 ~ 68214334 (-)
XLOC_031655 LO017735.1 non-coding upstream 1376325 68617958 ~ 68618089 (-)
XLOC_031656 NA non-coding upstream 1380465 68622098 ~ 68668542 (-)
XLOC_031659 NA non-coding upstream 1572290 68813923 ~ 68816110 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_05994517_06034201 CLIP1, CLIP1A coding CI01000059 null 5994517 ~ 6034201 (-)
bowfin (Amia calva) AMCG00018780 NA coding CM030135.1 CM030135.1 20229171 ~ 20279538 (-)