LOC110490506 (med21)


Basic Information

Item Value
gene id LOC110490506
gene name med21
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61188370 ~ 61194701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563928.2
tatgttgtgtgtgtgtatatatatatatataacagttgTGTACTCCAACCTGCGGATGGCAACAACCCGCTAAGAAACGTCTTGTCTGTCCGGAAAtccaaggagaaggagaaggagaaacaACAAAGATGGCGGACAGGCTAACGCAACTTCAAGATGCAGTCAATTCTCTTGCTGATCAGTTTTGTAACGCAATCGGGGTGCTGCAGCAGTGTGCGCCGCCAGCTTCGTTCAGCAACATACAGACAGCAATCAACAAGGACCAGCCATCGAACCCCACTGAGGAGTATGCCCAACTATTTGCTGCACTGATTGCCCGGACAGCTAAGGATGTGGACGTGCTGATTGACTCACTGCCTAGTGAGGAGTCCACGTCAGCTCTACAGGCGGCCAGTCTGCGGCAGTTGGAGGAGGAGAATCATGATGCAGCGGCACGTCTCGAAGAGGTGGTATACCGAGGGGACTTGCTACTGGAGAAGATCCAAAGCGCCCTGGCTGATATTGCTCAGTCACAACTTCGTACTCGCAGTGGAGGGCCCAACCAGACCACACCGCCTGAATCATGACCCCACACAACATGGAGCAAAGACATTCTCACATCACATCACTTTCTCACATAAACACACCAGAGGGTGCAAATGTGTGCAGGAAATCAAATAAAGAGCCCACCTGAACAGCTGACCTCTCAAGGAGGTGAATCTGTGGAAAATACTTTTCGCAATATGTGATGGGACATTGGGAAGTTGGTGCTTGGGGAATTCAGTGAGGCCATGAACCCACATGTTCCTTTACACAAGGACCTTGAGTTCTGCCAGAAAGGAACTGTTTACTCTGTCCTTTTCTTAGCACACTATTTTGGATTAAACAGCACTGCTCTGACGTCAACATCTGCTGTCATTTTCTTAACCCTGGTTATTTTGAGGATGCTAGTTAAGGGTCTGCTGACTGCTGTTGGTAGACATTTTTGTACATACTGAAAGAAACTGGTAAAAATAACAACTATCCTAAATTGATAGAAGCCCATTTTACATGCTGCATGCCAGAAAATAATAACGCTTTACAAGCAAGCCCTGTTGTGTTTTAGAAAGtcatgttttgtattttgtaccAATGTTTTTATTAACTGTTTATTTCAAGGCATGAATGGCATTTTAAAATGAAGTCAAGTGTTTGCATTTTATATGGAATGTTAGTGCTGCACATTTTGATATGCAACACAGACAAACCTTGGCCCCACAGAAAGATGGCTTTCAGAATGCCCCTGTTTTATTAAccagttatgcattagggggcgctattaaaatttttggatgaaaaacgt
>TU1500005
GCTGCGCTACAGTCAAACTGGATAGCATCGCCTCCTATATTCCAGTTAGAATAACTTGCTGATCAGTTTTGTAACGCAATCGGGGTGCTGCAGCAGTGTGCGCCGCCAGCTTCGTTCAGCAACATACAGACAGCAATCAACAAGGACCAGCCATCGAACCCCACTGAGGAGTATGCCCAACTATTTGCTGCACTGATTGCCCGGACAGCTAAGGATGTGGACGTGCTGATTGACTCACTGCCTAGTGAGGAGTCCACGTCAGCTCTACAGGCGGCCAGTCTGCGGCAGTTGGAGGAGGAGAATCATGATGCAGCGGCACGTCTCGAAGAGGTGGTATACCGAGGGGACTTGCTACTGGAGAAGATCCAAAGCGCCCTGGCTGATATTGCTCAGTCACAACTTCGTACTCGCAGTGGAGGGCCCAACCAGACCACACCGCCTGAATCATGACCCCACACAACATGGAGCAAAGACATTCTCACATCACATCACTTTCTCACATAAACACACCAGAGGGTGCAAATGTGTGCAGGAAATCAAATAAAGAGCCCACCTGAACAGCTGACCTCTCAAGGAGGTGAATCTGTGGAAAATACTTTTCGCAATATGTGATGGGACATTGGGAAGTTGGTGCTTGGGGAATTCAGTGAGGCCATGAACCCACATGTTCCTTTACACAAGGACCTTGAGTTCTGCCAGAAAGGAACTGTTTACTCTGTCCTTTTCTTAGCACACTATTTTGGATTAAACAGCACTGCTCTGACGTC

Function

symbol description
med21 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED21 (mediator complex subunit 21).

NR:

description
mediator of RNA polymerase II transcription subunit 21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563928.2 False 1321 mRNA 0.45 4 61188370 61194416
TU1500005 True 767 lncRNA 0.50 4 61188808 61194701

Neighbor

gene id symbol gene type direction distance location
LOC110490503 LOC106609511 coding downstream 830 61179208 ~ 61187540 (-)
LOC110490501 LOC106609509 coding downstream 11323 61143787 ~ 61177047 (-)
LOC110490500 NA coding downstream 55840 61124665 ~ 61132530 (-)
LOC110490499 NA coding downstream 71266 61107113 ~ 61117104 (-)
LOC110490496 LOC106609505 coding downstream 107766 61075775 ~ 61080604 (-)
LOC110490502 LOC106609510 coding upstream 4769 61199185 ~ 61209954 (-)
LOC110490507 LOC106576413 coding upstream 22742 61217158 ~ 61248945 (-)
LOC110490511 s38a2 coding upstream 120518 61314934 ~ 61326504 (-)
LOC110490512 LOC106609518 coding upstream 164580 61358996 ~ 61389047 (-)
LOC110490513 LOC106576407 coding upstream 215492 61409908 ~ 61415090 (-)
G1314798 LOC106576442 non-coding downstream 93733 61005663 ~ 61094637 (-)
G1314799 NA non-coding downstream 97931 61087935 ~ 61090439 (-)
G1314792 NA non-coding downstream 194050 60989032 ~ 60994320 (-)
G1314773 NA non-coding downstream 242463 60944769 ~ 60945907 (-)
G1314727 NA non-coding downstream 347762 60840341 ~ 60840608 (-)
G1314876 NA non-coding upstream 32147 61226563 ~ 61290216 (-)
G1314961 NA non-coding upstream 212465 61406881 ~ 61407809 (-)
G1314967 NA non-coding upstream 227395 61421811 ~ 61422016 (-)
G1314969 NA non-coding upstream 230677 61425093 ~ 61426132 (-)
LOC100653449 LOC106576405 non-coding upstream 260161 61426711 ~ 61465987 (-)
G1314304 NA other downstream 415882 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 1764063 59420247 ~ 59424344 (-)
G1312023 NA other downstream 2496988 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 2559540 58627298 ~ 58684968 (-)
G1311995 NA other downstream 2667791 58519957 ~ 58520579 (-)
G1315398 LOC106609523 other upstream 416004 61610420 ~ 61612116 (-)
G1315509 NA other upstream 640210 61834626 ~ 61836573 (-)
G1315519 NA other upstream 670614 61865030 ~ 61891421 (-)
G1315518 NA other upstream 698255 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 848354 62042770 ~ 62056023 (-)

Expression


Co-expression Network