XLOC_003163 (sarnp)


Basic Information

Item Value
gene id XLOC_003163
gene name sarnp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3308656 ~ 3318747 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006243
TTTACGGTGAGGTGAAGATCAGAATGAAACGTAAGCAAAACCATCCTCAAACATCTTCTCATGGGAAATTATTAGGGTTGGCTTAATACTTAAGCATTAAAAGATATCTTATATAAtggataatttattattattaaaattttatattcataaatgtatgaTTAAGCTCATTGAGTAtaactaacatttatttatttttttcatctatttatttatttttgtcttactgATAATTACTTATTTTGCTAAGACATATCAGATCAAAAAAATTCTCATTTgaatacagttttatattttcagcTTGTTATTTGGTAAACACAGCATGTATTTTGgcataaatatacaaaatgtatcaaatataagacgtttttgagaaaataaactgtttgatttgtaaacatttaactcAAACAACCACTTAAACTATTTCTTggtttatttgtatattaaatatgaatataagGATAGCAAGAAACTGATGACAACCTTACAAATTTGTCCGTTTCTCCTGACTGACAGGCGGTGCTGCAGCGCAGCAGCAGTCAGGTCTTAAACCGGAATGTAGCAGATTTCAAAATACAAACCCTCTTCAAGAAAATGGCGGAAGTCGTAGAGCTGCACAAACTCAAGTTGGCGGAGCTGAAGCAAGAATGCACTGCTCGTGGACTGGATGCCAAAGGAAATAAAAGTGATCTGATTTCCCGACTGCAAGCTTACCTGGAAGaacatgAAGAAGAAGTAAATGAAGAGGAGGTTCTGGGAGGGTTTGGCGAGGAGACCTTTGCCAAAGAAGAGAGCACTGACAAGAAGGAAGAGTTATCTCCAACTGAAATGGAGCCTGAGAAAAAGCTGGTCAAGTTGAACCCTCCTGTGGTAGCGGATGAGAGGCTTCAGAAGAGAGCGGAGCGCTTCAATGTTCCTCTGACTGGAGACAACAAAAAGGCAGCACGAGCAGCAAGGTTTGGAGTAACAGCACCTGAATCTTCCAAAGGAGCTTCAACGAAAACAAATGTTGACGTTGAGGTATTAAAGAAGAGAGCAGAACGTTTTGGCATGAATGTGTCCTCCGTTTCCAAAAAAGTTGAGGATGATGAGAAGCTTAAGAAGAGGAAGGAGAGATTTGGCATTGTCACAAGTGCATCGTCTTCTGGAGGAGGAGATGATTCAGAGGCAAAGAAGCGGAAACGTGCCGAGCGGTTTGGAAATGTATAA

Function

symbol description
sarnp Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human SARNP (SAP domain containing ribonucleoprotein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005575 cellular_component cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-050522-161 Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human SARNP (SAP domain containing ribonucleoprotein).

Ensembl:

ensembl_id ENSDARG00000059357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006243 True 1212 mRNA 0.38 11 3308656 3318747

Neighbor

gene id symbol gene type direction distance location
XLOC_003162 mmp19 coding upstream 16885 3279039 ~ 3291771 (+)
XLOC_003161 timeless coding upstream 36636 3211826 ~ 3272020 (+)
XLOC_003160 NA coding upstream 101958 3203487 ~ 3206698 (+)
XLOC_003158 cpne5b coding upstream 112774 3005536 ~ 3195882 (+)
XLOC_003159 dre-mir-724 coding upstream 131886 3176686 ~ 3176770 (+)
XLOC_003164 NA coding downstream 12366 3331113 ~ 3333714 (+)
XLOC_003165 pusl1 coding downstream 180364 3499111 ~ 3525259 (+)
XLOC_003166 CR558302.1 coding downstream 220241 3538988 ~ 3566250 (+)
XLOC_003167 si:dkey-33m11.8 coding downstream 257216 3575963 ~ 3584553 (+)
XLOC_003168 cdab coding downstream 267187 3585934 ~ 3593118 (+)
XLOC_003250 BX324177.11 misc downstream 8027056 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8054139 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8067615 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8099286 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8110646 11429393 ~ 11429689 (+)
XLOC_003156 CT583672.1 non-coding upstream 479981 2827553 ~ 2828675 (+)
XLOC_003149 FQ790208.1 non-coding upstream 692633 2615070 ~ 2616023 (+)
XLOC_003140 NA non-coding upstream 988301 2308209 ~ 2320355 (+)
XLOC_003169 NA non-coding downstream 297003 3615750 ~ 3735803 (+)
XLOC_003170 NA non-coding downstream 452519 3771266 ~ 3783125 (+)
XLOC_003176 CR559931.1 non-coding downstream 2163006 5481753 ~ 5481884 (+)
XLOC_003178 CU855733.1 non-coding downstream 2212696 5531443 ~ 5531576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_02212256_02222966 NA coding CI01000057 null 2212205 ~ 2223086 (+)