LOC110490514 (LOC106576438)


Basic Information

Item Value
gene id LOC110490514
gene name LOC106576438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61475576 ~ 61477946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944900.1
AGGCTCAATTGAAACGCTGTGAAGGATTTCGCTAGCGCAAATGTCTAAGTGCTTTACAACTCGTATCACCTCTGGTCGGATAGTAGCCTACTTCAATAGACGATCAGGATGCTCTGCTCACAAGGACCTTGGGACTCTGGCGGCAGCAGGgaatttgaaaataaaaatgaagTCTGGATTTATTCAGATGCTGAGGAAGAGGAAAGAGcTCATTCCTCTGATCGGCATTGTGGCATTGGCTGCTGTAGGAGCCACCTCTACCTCACTCTACTTCCTATTTACAAAGAAGGATGTCATTTTAAATAAAAGCACAAACCCTGAACCCTGGGAGAGACTGGACCCATCTAAACCACAGAAGCTGGTCACTATCAACCAGAAATGGAGGCCCATTGAAGAGCTGGAGCTGGTGAAGAGTATGACTAAGTgatctctctatctttctatttctctccattctctcccatTCCTCCCCCCCTCCATCCTGTATGAGAGCTGCCTCCTTGCCCTTCCTGCACCCCTTCCCAGTCTAGCAGAATCCTTTCTGCCCAGACTAGATTCTCTGATACTTAGTGTGCGGAAACGCTTCTGCTATACTGGTGGGGTATAACTGTGCTCAATACTGTCCCCAGGACTGAGGATGTCCACAGCTGTAGTGTTACTTACATCACCAGGCTGTAAAGAGTAAAAGCTTTTGTCTTCACTGTaaaccagctgtctgtctgtcccagtgatgttactgcactgtactgcactATAGCTGACTCTAAATGTGACCACAGCTGTTTGTTTGTGAAacaaactgtatgtgtgtgtgaaataaTAATTATTGCAATAAAAATTTACCATTGCTTGTGTTATTAA

Function

NR:

description
normal mucosa of esophagus-specific gene 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944900.1 True 861 mRNA 0.45 5 61475576 61477946

Neighbor

gene id symbol gene type direction distance location
LOC100653449 LOC106576405 coding downstream 9589 61426711 ~ 61465987 (-)
LOC110490513 LOC106576407 coding downstream 60486 61409908 ~ 61415090 (-)
LOC110490512 LOC106609518 coding downstream 86529 61358996 ~ 61389047 (-)
LOC110490511 s38a2 coding downstream 149072 61314934 ~ 61326504 (-)
LOC110490507 LOC106576413 coding downstream 226631 61217158 ~ 61248945 (-)
LOC110490515 LOC106576438 coding upstream 5155 61483101 ~ 61485762 (-)
LOC110490517 NA coding upstream 43806 61521752 ~ 61524082 (-)
LOC110490518 NA coding upstream 61447 61539393 ~ 61557927 (-)
LOC110490529 LOC106576403 coding upstream 135991 61613937 ~ 61646356 (-)
LOC110490528 LOC106576401 coding upstream 193697 61671643 ~ 61676140 (-)
G1314987 NA non-coding downstream 6858 61468518 ~ 61468718 (-)
G1314982 NA non-coding downstream 18457 61456905 ~ 61457119 (-)
G1314969 NA non-coding downstream 49444 61425093 ~ 61426132 (-)
G1314967 NA non-coding downstream 53560 61421811 ~ 61422016 (-)
G1314993 NA non-coding upstream 14843 61492789 ~ 61493156 (-)
G1315000 NA non-coding upstream 25196 61503142 ~ 61503650 (-)
G1315024 NA non-coding upstream 46258 61524204 ~ 61524452 (-)
G1315025 NA non-coding upstream 46520 61524466 ~ 61524685 (-)
G1314304 NA other downstream 703088 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2051269 59420247 ~ 59424344 (-)
G1312023 NA other downstream 2784194 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 2846746 58627298 ~ 58684968 (-)
G1311995 NA other downstream 2954997 58519957 ~ 58520579 (-)
G1315398 LOC106609523 other upstream 132474 61610420 ~ 61612116 (-)
G1315509 NA other upstream 356680 61834626 ~ 61836573 (-)
G1315519 NA other upstream 387084 61865030 ~ 61891421 (-)
G1315518 NA other upstream 414725 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 564824 62042770 ~ 62056023 (-)

Expression


Co-expression Network