LOC110490517


Basic Information

Item Value
gene id LOC110490517
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61521752 ~ 61524082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468711.2
caatAGTGATGTTTAGCAATGGTGATAGTAACTGTCACAGCATTAAATGTATATTatttaatataataattataataatctaTCCCGCCGTTCTTCTTTCAGGGCCCCACAAAATCCAGTCATTTGGAAGAAGTTGTTTCAGCGAACAACATGTCAGCAATTAGCACATTAACAGGTGGGTCGGCTGGTGCCACCATCACACATACAGGTCACGAGATGTGCTGGGCTCACCCTCCATGAATCCCAAGAATAGGAGTATAAAAGGAGTTTGAAAGCTCCAATTCAGCTCGAACTCAACCTTACATGACTCCAGTTCCCATCACCAACTTGACTCCAGTCCCTTGTTGTTCAGTCCTGCTGTTTCCACCCAGCGGTTTAGTTGTGACagtggctttcaatgagaatccAGTTGGCCTTCCCTCTCTTGTACCCCTCATTAACGTTGGCCCCCATGTCAGAGCCCTGGACTGCAGAGGGGAAGGCTCTCATGGTGTCTCTGCTGTACGGAGAGCCAGGTCTGATCCCAGCCATGAGGAGCCCACAGGCGGGGAGCCCTGTTTAAAATTCCGCTCTGCAACGTGTCGGCTTTCCAATCCACCGGGATTGCATTATTAAACTTACACAAGCTCATTTCCATACAAAGCAGGATATCAGCGGCAGAGTCATGCATATTTATCGCCGTGTGCCTGGCTTACGCACGAATACACTCGCACAATAACCCGCACGCAGGCATAACTTAGTCGTGGTACATAAGTGAGGGAGGAAACCGAGGTGCATTCCTAATGGTTTGAGCATGAGAGGTCCTGAGTGAGGATGGTCAGTGAAATCTACATGTCAATCACCTGACAAACCGACACATAAATAGGCAGtttctcacacacaaacaggggAGATGAGATGAGTTACACTTTGAGATCTGACGAGAAGTGTTTTACTGATAATCTACATGCACAGTCATGCACACACGGTCCAGCCAAGCCTCCACTTGTCCATTTTGACTGTTCCCTGCTAGTTGCTAGTTCCCTTAATGTCCCGACTCCCTACTCTCAGTTCCATTTCCCTGCCTGTGTCTCCCCCGTTCCTGCTGCCCCactgttcttctcctcctccactagTTTCCGAGCAccggtttctcctctcctcctcctcctccccctcttttcttCCTTGCCCTCCTTCAGGTGATGTccgtccctcctcctcctcctcctgtgagATTGCTGCTGTGTCTTATGGCTTTTTATTCCTACGTGAGGGTAGATGTGTTCATGTAGGGATAGAAGCCACTAAACACACAGTGAGAGGTCAACGTGCAGGCCAGTAGAGCCAAAGCTTCCTTTTCCACACAGAGCAAATAGCCTGCGGTGACGTTACAGTGGAGTTTGCTGTCTAACTCTAGGCCTACATGCAACCATTAAGTGACTTCAAAACAGAAATGCCAAACACATAGGCCTAAACAGAGTAGCAAATCTCTAAGACCCACCAACGAAAGCCCAGTACTAAAGGCTGTAACAAAGCCGAAGAAAGTCCTAAGATATAGTCCAAAACCAGTCTGTAATTCACTGGTTATCAAACAATCTTGTTCAAGAAATCCTTAAGAAAAGGGATGACATTTCTCTGCTGACAAATGGATGGAATACTTCAAGCTAAGGTAGGTCCACTACATCCATCTAAACTGAGGTGAGTTTCGTCCAGGTTCCCAACCCCAAATAGGCTGAACATTAGAATCCTGAGATGAATCATTGTAAAGTGTAAAATGTTATTCTATGTGCTTTATAATGATGACAAATAAAACCTACTTCTAGCTGCCATCATAGCTGAAGTGTAATAATTCAACACCCTCACTAATGTACATGAATGTACAGGAATGTTCACGCGTTCAAGCATCAATTATTGACAGTGTTTTCTATAGACCTCCAAGCTTTCAGGGAGAATGTGTTGGAATAGATTACTGCCAATGGATTCACTGCCTGAGGCTGCGTGTGCCTGTCTGTTTTCCTGAGTTGAGTTGATGCATTAATATGAAGTCTTTGTATGTATATACATGCATCTCTGTCTTTTAAGAATATATCTTCTGGCAGACTTAGATTTTCCTGTAATAAATAATGCTCTTTTGTGTTTTGCCGTTCTTCATTTGTTTTCTTTCATATTTTCAATGGTGGGACTTGATGAATAAATTATGCATTCAGCCAA
>TU1500244
CAGTGAGAGGTCAACGTGCAGGCCAGTAGAGCCAAAGCTTCCTTTTCCACACAGAGCAAATAGCCTGCGGTGACGTTACAGTGGAGTTTGCTGTCTAACTCTAGGCCTACATGCAACCATTAAGTGACTTCAAAACAGAAATGCCAAACACATAGGCCTAAACAGAGTAGCAAATCTCTAAGACCCACCAACGAAAGCCCAGTACTAAAGGCTGTAACAAAGCCGAAGAAAGTCCTAAGATATAGTCCAAAACCAGTCTGTAATTCACTGGTTATCAAACAATCTTGTTCAAGAAATCCTTAAGAAAAGGGATGACATTTCTCTGCTGACAAATGGATGGAATACTTCAAGCTAAGGTAGGTCCACTACATCCATCTAAACTGAGGTGAGTTTCGTCCAGGTTCCCAACCCCAAATAGGCTGAACATTAGAATCCTGAGATGAATCATTGTAAAGTGTAAAATGTTATTCTATGTGCTTTATAATGATGACAAATAAAACCTACTTCTAGCTGCCATCATAGCTGAAGTGTAATAATTCAACACCCTCACTAATGTACATGAATGTACAGGAATGTTCACGCGTTCAAGCATCAATTATTGACAGTGTTTTCTATAGACCTCCAAGCTTTCAGGGAGAATGTGTTGGAATAGATTACTGCCAATGGATTCACTGCCTGAGGCTGCGTGTGCCTGTCTGTTTTCCTGAGTTGAGTTGATGCATTAATATGAAGTCTTTGTATGTATATACATGCATCTCTGTCTTTTAAGAATATATCTTCTGGCAGACTTAGATTTTCCTGTAATAAATAATGCTCTTTTGTGTTTTGCCGTTCTTCATTTGTTTTCTTTCATATTTTCAATGGTGGGACTTGATGAATAAATTATGCATTCAGCC
>TU1500245
CAGTGAGAGGTCAACGTGCAGGCCAGTAGAGCCAAAGCTTCCTTTTCCACACAGAGCAAATAGCCTGCGGTGACGTTACAGTGGAGTTTGCTGTCTAACTCTAGGCCTACATGCAACCATTAAGTGACTTCAAAACAGAAATGCCAAACACATAGGCCTAAACAGAGTAGCAAATCTCTAAGACCCACCAACGAAAGCCCAGTACTAAAGGCTGTAACAAAGCCGAAGAAAGTCCTAAGATATAGTCCAAAACCAGTCTGTAATTCACTGGTTATCAAACAATCTTGTTCAAGAAATCCTTAAGAAAAGGGATGACATTTCTCTGCTGACAAATGGATGGAATACTTCAAGCTAAGGTAGGTCCACTACATCCATCTAAACTGAGGTGAGTTTCGTCCAGGTTCCCAACCCCAAATAGGCTGAACATTAGAATCCTGAGATGAATCATTGTAAAGTGTAAAATGTTATTCTATGTGCTTTATAATGATGACAAATAAAACCTACTTCTAGCTGCCATCATAGCTGAAGTGTAATAATTCAACACCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468711.2 False 2193 mRNA 0.45 2 61521752 61524082
TU1500244 False 896 lncRNA 0.39 1 61521754 61522649
TU1500245 True 548 lncRNA 0.41 1 61522102 61522649

Neighbor

gene id symbol gene type direction distance location
LOC110490515 LOC106576438 coding downstream 35990 61483101 ~ 61485762 (-)
LOC110490514 LOC106576438 coding downstream 43806 61475576 ~ 61477946 (-)
LOC100653449 LOC106576405 coding downstream 55765 61426711 ~ 61465987 (-)
LOC110490513 LOC106576407 coding downstream 106662 61409908 ~ 61415090 (-)
LOC110490512 LOC106609518 coding downstream 132705 61358996 ~ 61389047 (-)
LOC110490518 NA coding upstream 15311 61539393 ~ 61557927 (-)
LOC110490529 LOC106576403 coding upstream 89855 61613937 ~ 61646356 (-)
LOC110490528 LOC106576401 coding upstream 147561 61671643 ~ 61676140 (-)
LOC110490526 pkp2 coding upstream 153469 61677551 ~ 61685779 (-)
LOC110490535 LOC106609526 coding upstream 168579 61692661 ~ 61704751 (-)
G1315000 NA non-coding downstream 18102 61503142 ~ 61503650 (-)
G1314993 NA non-coding downstream 28596 61492789 ~ 61493156 (-)
G1314981 LOC106576438 non-coding downstream 36075 61474924 ~ 61485677 (-)
G1314987 NA non-coding downstream 53034 61468518 ~ 61468718 (-)
G1314982 NA non-coding downstream 64633 61456905 ~ 61457119 (-)
G1315024 NA non-coding upstream 122 61524204 ~ 61524452 (-)
G1315025 NA non-coding upstream 384 61524466 ~ 61524685 (-)
G1315032 NA non-coding upstream 3088 61527170 ~ 61527699 (-)
G1315036 NA non-coding upstream 5552 61529634 ~ 61530472 (-)
G1315043 NA non-coding upstream 11154 61535236 ~ 61535517 (-)
G1314304 NA other downstream 749264 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2097445 59420247 ~ 59424344 (-)
G1312023 NA other downstream 2830370 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 2892922 58627298 ~ 58684968 (-)
G1311995 NA other downstream 3001173 58519957 ~ 58520579 (-)
G1315398 LOC106609523 other upstream 86338 61610420 ~ 61612116 (-)
G1315509 NA other upstream 310544 61834626 ~ 61836573 (-)
G1315519 NA other upstream 340948 61865030 ~ 61891421 (-)
G1315518 NA other upstream 368589 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 518688 62042770 ~ 62056023 (-)

Expression


Co-expression Network