LOC110490534 (LOC106609529)


Basic Information

Item Value
gene id LOC110490534
gene name LOC106609529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61719265 ~ 61723126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563970.2
TTTTCACACGGAATTATTTCCGTGTAGTACATACACGGAAATATTTCCATCAAACACAAATGCAACATTTCTGTAGAGCATGGCTGCTACAGGTCATTTAAATAGGTTGAGTTGTTTATTTACACGGTTTTCAACTGTTACTCAACTAAAACACTGCACAGGCGTTGTGCCTGTCCTTCACAAGTCAACTATCCGTGGACCTTCCATTGATGATGATTGTAAGGTGGAAATTGGTGTGACATCTGATGGGAAGACCATAGTGTGCTACCATCCCTCTGAGGATGTTCCTTATGAACTTACCCAGCCCATTCTACGGCCAGACCCCCTGACCAATCCGGCAGAGACACATGACCAGGTGCTGAAGGCCCATCTCGGCAGGGAGGTGCTGCAGAACAAACAGGCCCCCACCATCGAGGAGCTGAGCAAAATGTTTCACACCACCAAGCACCGCTGGTACCCAGTGGGACAGTACCATACACGACGCAGAAAGAGAGATCCCCCAAAAGACCGATAATTGTTAAGGAGTTTCTTACCTTCAGAATCATTGATAACTTACATAATTATTAGCTTGGCTCACCCTCCAAATCCCAAACTGTTTTTTGGTGTAATTTCAATTGTGCTGTAAAATAAAATTAACATATCTGAAGTTGCGCACTTGTTTTGAAGCAGATTACCAAAACTGtctgtgaaatatatattttccctATTTGCTGAATACCTTGTATTTCATTAAATTCTGGGACATGGTTAGGGTATTTGCATGTTATTGTGGAAGGAGAGCACTGCAATGGGGACCAGTGTAACGGGAGAAAGACAAAGCTGCAACTGGGACTCAAACTTTGGCTCATACGGTGCAGAACAATATTACATTGATTGTGAGAACTGTCAATTTTTACGATCATTTCAATTCAGTCCATATCTTTCAGGTTTTTGTGATTCAAAGAAATTACAATAAAGAATACGTTCATA

Function

NR:

description
PREDICTED: 39S ribosomal protein L42, mitochondrial-like

GO: NA

KEGG:

id description
K17423 MRPL42; large subunit ribosomal protein L42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563970.2 True 969 mRNA 0.42 5 61719265 61723126

Neighbor

gene id symbol gene type direction distance location
LOC110490533 LOC106609528 coding downstream 90 61715542 ~ 61719175 (-)
LOC110490535 LOC106609526 coding downstream 14514 61692661 ~ 61704751 (-)
LOC110490526 pkp2 coding downstream 33486 61677551 ~ 61685779 (-)
LOC110490528 LOC106576401 coding downstream 43125 61671643 ~ 61676140 (-)
LOC110490529 LOC106576403 coding downstream 72909 61613937 ~ 61646356 (-)
LOC110490527 LOC106609530 coding upstream 3078 61726204 ~ 61731947 (-)
LOC110490519 LOC106576394 coding upstream 21040 61744166 ~ 61759577 (-)
LOC110490525 LOC106576390 coding upstream 68684 61791810 ~ 61798497 (-)
LOC110490520 zn12 coding upstream 80927 61804053 ~ 61822658 (-)
LOC110490521 LOC106576387 coding upstream 113710 61836836 ~ 61842089 (-)
G1315402 NA non-coding downstream 94206 61624841 ~ 61625059 (-)
G1315401 NA non-coding downstream 95302 61623706 ~ 61623963 (-)
G1315400 NA non-coding downstream 96681 61622371 ~ 61622584 (-)
G1315399 NA non-coding downstream 110493 61608145 ~ 61608772 (-)
G1315459 NA non-coding upstream 1178 61724304 ~ 61724553 (-)
G1315461 NA non-coding upstream 10212 61733338 ~ 61733753 (-)
G1315443 NA non-coding upstream 17402 61740528 ~ 61741059 (-)
G1315464 NA non-coding upstream 36949 61760075 ~ 61760276 (-)
G1315485 NA non-coding upstream 65229 61788355 ~ 61788557 (-)
G1315398 LOC106609523 other downstream 107149 61610420 ~ 61612116 (-)
G1314304 NA other downstream 946777 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2294958 59420247 ~ 59424344 (-)
G1312023 NA other downstream 3027883 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 3090435 58627298 ~ 58684968 (-)
G1315509 NA other upstream 111500 61834626 ~ 61836573 (-)
G1315519 NA other upstream 141904 61865030 ~ 61891421 (-)
G1315518 NA other upstream 169545 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 319644 62042770 ~ 62056023 (-)
G1316178 NA other upstream 533972 62257098 ~ 62264093 (-)

Expression


Co-expression Network