LOC110490527 (LOC106609530)


Basic Information

Item Value
gene id LOC110490527
gene name LOC106609530
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61726204 ~ 61731947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563963.2
AAGTACGTCATCAGTCTGCGACACTGCCTGTCTCGACAAAGTAGGACTCAACTCACATGTCAATGTGTGCCATTTTTATGTAACTTCTGGATCTTTACGAACTGTTTGTACACTTTAGAGTTGTACATTACATTGAATTTCGTGTGCATTACTAGGAAGCTGGTACGTTGTCAATAATGAGTTCTCAGATCACTTGTGTTGGATGGGTAAAGCGAGGCGTTTCGAAGGAAACACCAGATAAGgtGGAGTTGAGCAAAGAAGAATTGCAACGCATTATAGCAGAGGCAAAAGAACAATTGGGTGACTGCCAACCTTGGTAACAGCCTTGCCGGCCTCACAGTGTTCAGCACCAATGAGGAGGATCCTTACATTACCATCAAAGACACAGACCAGTATGAGCGAGAGGACTTTCAAATCAAGCCCAATGATAACCTCGTAATTTCAGGCAGAGCAGAGAAGGACTGCTGCAACCTGGAGATTCACGTATACAACTCCGAGGAGGAATCCCTCTATGTTCACCATGACATACTCCTGCCAGCCTATCCACTGTGTGTGGAGTGGCTTAACTTTGACCCTAGTCCAGAAGGCACAGGCAATTATGCGGCTGTAGGCAACATGACACCGCAGATTGACGTGTGGGACCTGGATGTGGTGGACTGCCTAGAGCCTGCCTTCACTCTGGGGAGCAAGAAGGCCTCCAAAAAGAAAAGCAAAAAGGCTGCAGCAGAGCCAGTGGAAGGTCATACAGACGCTGTACTCGACTTATCCTGGAACAAGCTGGTCCGCAACGTCTTGGCCAGTGGGTCAGCCGACAAAACAGTGATCCTGTGGGATCTGGCACAGGGAAAGCCGGCCACAACACTGTGCAGACACACTGACAAGGTTCAGACGTTGATGTTCCACCCCTTTGAAGCTCAGACCCTGATATCAGGATCATACGATAAGTCGGCAATCCTGTATGACTGCCGCAGCCCGGACAGCAGCCATCGCACTTGGAGGTTTAGCGGGCAGGTGGAAAGGGTCGCCTGGAACCACTTCTCGCCCTGCAACTTCCTGGCGAGCACAGAGGACGGCTTTGTTTACTGTCTGGACGCACGCTCGGACAAGCCAGTGTTTACACTAAGGGCACATGACGGAGAGGTGTCAGGCTTGGACCTTAGCAGCCAGATCCGGGGATGCTTGGTCACCTCGTCAGCAGACAAACACGTCAAGATTTGGGACATCTTGGGGAACAAGCCCAAACTGGTTCACACCCGGGACATGAAAATGGGGGTGCTGTTCTGTGCAGCGTGCTGTCCTGACATGCCCTTTGTATATGCCTTTGGAGGACAGAGGGATGGCCTGCGGGTTTGGGACATAAGTGATGTGGCAGCAGTCGCTGAGGTGTTTGGCAATCGGGAGCGGTTGGTGGCAACCACAGCGCCTGAGGCATCCAGCAGCACTTCCTCCACAGCAGATATGGAGCTTTCCTAGTGAGCCACTCTGGACCAACTTCCAATCAACATAGAGCGACACCTTGGACTCACACAGAGAGATCCACATAGCCAAAGACTTTCTGTCAACCCGAGGCCAAGAAGGCACTTCCAAGAACATTGCCAGAACTGTGGATAGACTTTCTCTCTTCAAACTTTTCTTCTAAAACATCTCCTAATAATTAAGCACCAcataaatatttgtttttgtgAGCTAAAATGTCTTTGCAACAAGGAAGGTGAATATTTATCTGAATGTATGTCTAAATATTTcaataaatatttgtttttgaCTAACAATCAAAGGAATAACTATTGAAATGTGATTTTGAAGGCACAGGTATCTGGTTTAATGTCATCAATGATTATTTGTGTAGGAATTTGCTGATCTTGGCCTGAAATCCtgagatgattttttttttctccctcagaATAAACTATGTATTGTGTCAGTGACA
>XM_021563962.2
AAAGAAGAAGTACGTCATCAGTCTGCGACACTGCCTGTCTCGACAAAGTAGGACTCAACTCACATGTCAATGTGTGCCATTTTTATGTAACTTCTGGATCTTTACGAACTGTTTGTACACTTTAGAGTTGTACATTACATTGAATTTCGTGTGCATTACTAGGAAGCTGGTACGTTGTCAATAATGAGTTCTCAGATCACTTGTGTTGGATGGGTAAAGCGAGGCGTTTCGAAGGAAACACCAGATAAGgtGGAGTTGAGCAAAGAAGAATTGCAACGCATTATAGCAGAGGCAAAAGAACAATTGGGTGAACGCgtaggtgaagaggaggaggaggatgatgatgaaggCATGGCCAGCGGGCAGGAACAGAGTGAAGAGGCAGAAGGTGTTCAGGGACAGGAGCCAGAGCAAGATGAAAATGAAGCAGGAAGGGAGGAAGCTGATGAACTAGCAGAGTATGGTTTGGATAGATATGACGAGGAAGACTCTGTGACTGCCAACCTTGGTAACAGCCTTGCCGGCCTCACAGTGTTCAGCACCAATGAGGAGGATCCTTACATTACCATCAAAGACACAGACCAGTATGAGCGAGAGGACTTTCAAATCAAGCCCAATGATAACCTCGTAATTTCAGGCAGAGCAGAGAAGGACTGCTGCAACCTGGAGATTCACGTATACAACTCCGAGGAGGAATCCCTCTATGTTCACCATGACATACTCCTGCCAGCCTATCCACTGTGTGTGGAGTGGCTTAACTTTGACCCTAGTCCAGAAGGCACAGGCAATTATGCGGCTGTAGGCAACATGACACCGCAGATTGACGTGTGGGACCTGGATGTGGTGGACTGCCTAGAGCCTGCCTTCACTCTGGGGAGCAAGAAGGCCTCCAAAAAGAAAAGCAAAAAGGCTGCAGCAGAGCCAGTGGAAGGTCATACAGACGCTGTACTCGACTTATCCTGGAACAAGCTGGTCCGCAACGTCTTGGCCAGTGGGTCAGCCGACAAAACAGTGATCCTGTGGGATCTGGCACAGGGAAAGCCGGCCACAACACTGTGCAGACACACTGACAAGGTTCAGACGTTGATGTTCCACCCCTTTGAAGCTCAGACCCTGATATCAGGATCATACGATAAGTCGGCAATCCTGTATGACTGCCGCAGCCCGGACAGCAGCCATCGCACTTGGAGGTTTAGCGGGCAGGTGGAAAGGGTCGCCTGGAACCACTTCTCGCCCTGCAACTTCCTGGCGAGCACAGAGGACGGCTTTGTTTACTGTCTGGACGCACGCTCGGACAAGCCAGTGTTTACACTAAGGGCACATGACGGAGAGGTGTCAGGCTTGGACCTTAGCAGCCAGATCCGGGGATGCTTGGTCACCTCGTCAGCAGACAAACACGTCAAGATTTGGGACATCTTGGGGAACAAGCCCAAACTGGTTCACACCCGGGACATGAAAATGGGGGTGCTGTTCTGTGCAGCGTGCTGTCCTGACATGCCCTTTGTATATGCCTTTGGAGGACAGAGGGATGGCCTGCGGGTTTGGGACATAAGTGATGTGGCAGCAGTCGCTGAGGTGTTTGGCAATCGGGAGCGGTTGGTGGCAACCACAGCGCCTGAGGCATCCAGCAGCACTTCCTCCACAGCAGATATGGAGCTTTCCTAGTGAGCCACTCTGGACCAACTTCCAATCAACATAGAGCGACACCTTGGACTCACACAGAGAGATCCACATAGCCAAAGACTTTCTGTCAACCCGAGGCCAAGAAGGCACTTCCAAGAACATTGCCAGAACTGTGGATAGACTTTCTCTCTTCAAACTTTTCTTCTAAAACATCTCCTAATAATTAAGCACCAcataaatatttgtttttgtgAGCTAAAATGTCTTTGCAACAAGGAAGGTGAATATTTATCTGAATGTATGTCTAAATATTTcaataaatatttgtttttgaCTAACAATCAAAGGAATAACTATTGAAATGTGATTTTGAAGGCACAGGTATCTGGTTTAATGTCATCAATGATTATTTGTGTAGGAATTTGCTGATCTTGGCCTGAAATCCtgagatgattttttttttctccctcagaATAAACTATGTATTGTGTCAGTGACA

Function

NR:

description
periodic tryptophan protein 1 homolog isoform X1

GO: NA

KEGG:

id description
K14791 PWP1; periodic tryptophan protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563963.2 False 1930 mRNA 0.48 14 61726204 61731940
XM_021563962.2 True 2122 mRNA 0.48 15 61726204 61731947

Neighbor

gene id symbol gene type direction distance location
LOC110490534 LOC106609529 coding downstream 3078 61719265 ~ 61723126 (-)
LOC110490533 LOC106609528 coding downstream 7029 61715542 ~ 61719175 (-)
LOC110490535 LOC106609526 coding downstream 21453 61692661 ~ 61704751 (-)
LOC110490526 pkp2 coding downstream 40425 61677551 ~ 61685779 (-)
LOC110490528 LOC106576401 coding downstream 50064 61671643 ~ 61676140 (-)
LOC110490519 LOC106576394 coding upstream 12219 61744166 ~ 61759577 (-)
LOC110490525 LOC106576390 coding upstream 59863 61791810 ~ 61798497 (-)
LOC110490520 zn12 coding upstream 72106 61804053 ~ 61822658 (-)
LOC110490521 LOC106576387 coding upstream 104889 61836836 ~ 61842089 (-)
LOC110490536 NA coding upstream 118420 61850367 ~ 61861261 (-)
G1315459 NA non-coding downstream 1651 61724304 ~ 61724553 (-)
G1315402 NA non-coding downstream 101145 61624841 ~ 61625059 (-)
G1315401 NA non-coding downstream 102241 61623706 ~ 61623963 (-)
G1315400 NA non-coding downstream 103620 61622371 ~ 61622584 (-)
LOC110490529 LOC106576403 non-coding downstream 111093 61613937 ~ 61646356 (-)
G1315461 NA non-coding upstream 1391 61733338 ~ 61733753 (-)
G1315443 NA non-coding upstream 8581 61740528 ~ 61741059 (-)
G1315464 NA non-coding upstream 28128 61760075 ~ 61760276 (-)
G1315485 NA non-coding upstream 56408 61788355 ~ 61788557 (-)
G1315499 NA non-coding upstream 91195 61823142 ~ 61823364 (-)
G1315398 LOC106609523 other downstream 114088 61610420 ~ 61612116 (-)
G1314304 NA other downstream 953716 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2301897 59420247 ~ 59424344 (-)
G1312023 NA other downstream 3034822 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 3097374 58627298 ~ 58684968 (-)
G1315509 NA other upstream 102679 61834626 ~ 61836573 (-)
G1315519 NA other upstream 133083 61865030 ~ 61891421 (-)
G1315518 NA other upstream 160724 61874995 ~ 62006707 (-)
G1316051 LOC106609550 other upstream 310823 62042770 ~ 62056023 (-)
G1316178 NA other upstream 525151 62257098 ~ 62264093 (-)

Expression


Co-expression Network