LOC110490525 (LOC106576390)


Basic Information

Item Value
gene id LOC110490525
gene name LOC106576390
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61791810 ~ 61798497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563958.2
gacactgatgttaaaatagtacttggtggcaaaggTTTCACATCCTCTTATggtggtaacgttagctagctagatttacTTTCTACTGTCTCATGCGGCGCTCACTAGCCAAGGTAGCTAAGATATTGATTGGCACATGGGCCATAATGGattcccccatccctctctcctccctgcgcCTTTTGGTTCCACCTCTACGACTGATGTCTGCATTTATGTGGCAGGTATCACAACAGAGGGCCATTAAGCACTATGGAAAATTAGAGGAGTTTGTAACCGTGGTAACACAAACTGTCCCAGAACTtatgactgacagacagaggacCCTCCTTATTTTGGGGCTGAGAGCAAGGGTAACTTTGGGGCGATTTTCTGCTGAGCACCCTGTCAGCCTCCAAACCCTCCTTTATTCTATAAAGTCTTCTCAACTTGCACAGGTTCAGTCCTATGATGCAGGCATGGAATCACCTGAAACTAACTTTGCCAAGCTCACCCAAAGCTTGATTACAGACCCAGTTGAGCGTGAACACTTCGTTCAAGTGGTGTTCCTTGAGGAATTCAGACCTGATTTTGACAAAGCGCTTCAGGAACTGGTCTGTGACTTCCTCACTAGATTGGAAGAGCTGCTTACACTACCAGACTTTAAGCAGACTGCATTGTTGCTGAGTGCTGGCTCCTCTGGCCTAGATGAATGCCTGCAGTCTTTCTCTCACTCAGAAGATCTCCAGTTTCTGCTCCAGAATTACAAACAATGCAGAACATTGTACACAAACATTTCCTCCTCTGACATTCCTCAGGAATCAGATATTGAATCCGATGCCTTCCCTGACCAGTTAAACCGTACCAATCTGGACACTGGTGTGGCTATGAGGACAGCACATTTAGTGGCAATGGGGAGCACAAGAGATATTATAGGCTGCGATGAAACCTGTGATGAAGCGAATGAAGATGACATAGATGTAGAGGACGAGTCAGCACAGAAAAGGGCTGGTTCTGGTCTTTCTCCTACCAGTGTCGTGCAAGGTGGTGATACAGACCCAGTTGCAGGGGTGTCGTTTCAGGTGTTGACTCCCCTGTCTTCAGCTTCAAATGAGTGTGCCCCATCTACTTCCAGTTCATCACACATTAACATTTTCCACCAGTGTCCCCAGTGTGGGAAGTGCTTTAATTATCAGTCTCAACTTGTCCAACACCAGCAAATTCACTGTGGGGATAATCCATACAAGTGCTCCAACTGCGGGAATAGATTCAAATTCTTTACAAGTCTGTCAAACCATAAGAGGATGCAATGTGTGGGCACTGCCTTTAGCTGCCCCAAATGCTGGAGAGAGTTTGGTTCTCTTCGTGAGAAATTGAGACACCAGTGTCCACACAACGAATCCATGTCCATCTGTCCACAGAGCGGGAAGAGTTTTAAGACATCACCACAATATCCATTCCAGTGTCGTCACTGTGCAAGGAGCTTTCCCGAATCGAATCAACTGGACACCCACGAAAAAAGTCACAGTGTCGTCCAAACGCTCGACTGTCACAAATGTGGAATGACCTTCAGCAACTTGCCCAGCCTCGTGCACCACGTAGAAGCCCACAAGAGGTCGGATCTGAGGCCATCGTCGCACCTTCCAAAGAAGAAAGGATTGCAGCTTCCGAGAACTCACCATTGCCACCAATGTGGAAAGTCCTTCGTAACAAACCGTCGCCTCAAGGATCACATGCGCACTCATATGAATTATCGTCCCTTTTCCTGCTCCTACTGTGGGAAATGTTTCACTCAGAAAGGTAATCTCACTGTGCACATAAGGCTCCACACAGGGGAGAGACCGTACATGTGCTCTGTGTGTGGGAAGGCGTTTCCATCAGGAGGGGATCTGCAGGTACACCAGCGCTTTCACACTGGGGAGAGACCTTACCAATGCAAAGAGTGTGATAAACGTTTTTTTAAGTCGAGCCATTTAGTGGTCCACATGCGTGGGCATAGGGGAGAGCGTCCCTACACTTGTAATGAATGTGGGAGGGGTTTTATCCGGAGAACTTGCTTAAAAAAACATTTGCTAGTTCATTCAGGGGAGAGGCCATATTCATGTCTTCGTTGCCCGAATACTTACAAACGCAGTTCACACCTGAACTATCACATGAAGAAAAATCATTGAAAGTTGTAGTGTATATTTACAATATGCTTTTTTTGGTAGAGCTTTTGTAATAGTGGCATTAGTGGAGATGCAGGAAGTACACCCAGTACCAAACTAATTTATCATATCCTCAACACTTTAAAGCCTTGTTTCCCAGTTCACGGGGAAGTTCAGTAATTTACAGCTTGACGATTCCTCATCCTTTaagtagtctatgggccaggagACACTGTAATCTGTGCTTCAGTTTTCTTTAAACAGACACTACAAACTAACAAGCTAACTTGAGCCCCCACTAGCTATTTTGTGTGATTTGGCTATTACGTTTAGAACAATTGCATAATTGACCACTCCCTTTGATTTGTAGTTAGCGGTGTTTAAAATTAGCTAAAGTTTGTAGTGGCTGCTTAAAGAAAACTGAACCATAGATTCCAGGTTTTCCTGGCCCAGTCTACTTTCAAGGTGATGAACCATCTAACATTAAGTTGTTAAATAGTGAACTTGCCCTTTTTAAAAATCACTCTGCATAATAGTTGAGGATGAAAACCAGTGGAGTGGCTTATGTACATATTGAGGCTGTTCCATCTGTTTGTTTACGTAATGTTATATGGAGTTTTGGTGAAACTGTTTAAATGTTCAGCACCTGGATTTATTTCCATGGTGATATAGTGATTTAGTGTTCTGTTGAATGCAGTATAATCGGCAGAATCTACTCTTCTGTAATTGAGTTATGCATTCATATATCAATAAACATATCCATCTAAAAATGCCAACCGTTTAGCCTTTGTGTAAACGTTGTGTCATTCCAAAACATTAAAGTGGATGAATGATTGA

Function

NR:

description
oocyte zinc finger protein XlCOF22-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563958.2 True 2963 mRNA 0.44 9 61791810 61798497

Neighbor

gene id symbol gene type direction distance location
LOC110490519 LOC106576394 coding downstream 32233 61744166 ~ 61759577 (-)
LOC110490527 LOC106609530 coding downstream 59863 61726204 ~ 61731947 (-)
LOC110490534 LOC106609529 coding downstream 68684 61719265 ~ 61723126 (-)
LOC110490533 LOC106609528 coding downstream 72635 61715542 ~ 61719175 (-)
LOC110490535 LOC106609526 coding downstream 87059 61692661 ~ 61704751 (-)
LOC110490520 zn12 coding upstream 5556 61804053 ~ 61822658 (-)
LOC110490521 LOC106576387 coding upstream 38339 61836836 ~ 61842089 (-)
LOC110490536 NA coding upstream 51870 61850367 ~ 61861261 (-)
LOC110490558 NA coding upstream 260113 62058610 ~ 62062523 (-)
LOC110490561 LOC106576375 coding upstream 282474 62080971 ~ 62083812 (-)
G1315485 NA non-coding downstream 3253 61788355 ~ 61788557 (-)
G1315464 NA non-coding downstream 31534 61760075 ~ 61760276 (-)
G1315443 NA non-coding downstream 50751 61740528 ~ 61741059 (-)
G1315461 NA non-coding downstream 58057 61733338 ~ 61733753 (-)
G1315459 NA non-coding downstream 67257 61724304 ~ 61724553 (-)
G1315499 NA non-coding upstream 24645 61823142 ~ 61823364 (-)
G1315509 NA non-coding upstream 36129 61834626 ~ 61836573 (-)
G1315522 NA non-coding upstream 68891 61867388 ~ 61868018 (-)
G1315518 NA non-coding upstream 76498 61874995 ~ 62006707 (-)
G1315537 NA non-coding upstream 104954 61903451 ~ 61912714 (-)
G1315398 LOC106609523 other downstream 179694 61610420 ~ 61612116 (-)
G1314304 NA other downstream 1019322 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2367503 59420247 ~ 59424344 (-)
G1312023 NA other downstream 3100428 58634282 ~ 58691382 (-)
LOC110490770 NA other downstream 3162980 58627298 ~ 58684968 (-)
G1315519 NA other upstream 66533 61865030 ~ 61891421 (-)
G1316051 LOC106609550 other upstream 244273 62042770 ~ 62056023 (-)
G1316178 NA other upstream 458601 62257098 ~ 62264093 (-)

Expression


Co-expression Network