LOC110490521 (LOC106576387)


Basic Information

Item Value
gene id LOC110490521
gene name LOC106576387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61836836 ~ 61842089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563946.2
AAACGTCATATATAAACGACGACCGTGAATGTTCGGTTATTTTGCTTCtcatctagctagctagatagctaaccaGCTTGTGAATTTTGGGAAAATGGCTGAATCGTTTGAAGAACGTCTCGTAAAAGCTGTCAAAGAGCATACACACTTGTATGATACCTCAATGCGTTTACATTTCGACAAAGAGGCTCTCGAACACAGTTGGCGCGAAATTGCTACATATTTAAACTCCGATCCAGATACTTGCAGGAAGAAATGGAGACTTGCAAGGGACCGTCATGTGAGAGCACTGAAAAAGTCTAAGGACATGCCAGAGGGTGTACCGAGGCCTGGAAGCCTGAGTTGGCTCACCATTTTTATAAAACATCGGCAAACCAACCCAAACTTTCCCGAGATCTCAGCAGACAGAGTTGCGAGTCCTAATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGGCAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCACTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGTCTGAGAGCAAGGATGGTTTTAGAGTTGTTTCGTAATGAAAACCCACCGGACCCCCAGACCATCCAACTTAATTTGGACAGAATCAAAACTTCTTCGGTACATGCTGTGCACAAGGATTCACAGAGTAGAAATGAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCTGGTCAAAACCCTGCTCGAAGACCCTTCTGAGAAGAAGCACTTCTTCCAGgTGGTGTTCCCAATACGTTATGGCCCTCGGTATGACACAGCACTGCAGATACTGATGTGGGAGTTTCTCTCCCGACTGGAGGAGCTGCTGCCTGTACCAGACCTCACAGAGACAGCATCTCGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAATGAATTCTCCAACCAGGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGCCTTGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGGAGGATGATGGAAGTGAGAGAAATGAAGACACTGAGAGGGGATTGAAGGATGAGGATGACGCAAAGTGGACCTCGCCTCTGAGTGAACCAGAGGACTCGGATGAACCGGCTAGTGACATGCCCTCCCAGGTCTTCTCCTGCCCCCAGTGCCCATTCTCCCACAGGGAAATGGTGGACCTTCATCAGCACATCAGGAAGGAACATCTAAcagaggaggacagcaggagCCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAGCCAAGAGCTCCTCAGCCAAGAGCTCGTCAGCCAAGAGCTCGTCAGCCAAGAGCTCGTCAGCCAAGAGAATCAATAACAACACCTGCAAACAGTGTGGGAAGGGTTTCAGATGCACAACTGACCTGAAACGACACCAAAGTGTTCACACCAGTGTGCAGCCGTTCCGGTGCAATCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAATTGCACAAGAAAAGTCACGACGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGCAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGTACCCACACCGGAGAGCGCCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTCAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGATAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCACGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAACGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCCCCATTACTGCCACACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAACTCATAAAAAATAATGTCATTGGCTCTTTGTCAGACTAAAGGAATTTTTAACTAGTGTAATGTTTATTTCTCCTTGAGCTCAAAGCCAAAAGTAGGGAAAAAATAATTGTATTATAGGTAATGTACATCGTCCTGACAAAGTATCCATTCTGTTATTTTCCCCTTGGTAATGTGATCTGTTGTTAAAGAACTTTGGGCACAGACTTCACAATGACACGGAGGTTTTACTTAGTGCACTGCCAACTGCACTGTACTCTGTGAGCACAGTAGGGTTAACATGGTGTAAGGATCACATGTAGTTCGTGTAGGCTGTTCTGTACCTGAAGTAATGAAAAGTTTTGACTGCAACTATCAAGTTGTCTTTTTAATAATCATTCATGTGTTTTGGGGCAAGCTCCTGATGTATGTTGGAACAGAGTCCTCCCTTTTCtcctacatttttattttcagtcAGGCACCTGATTCCCTTCTGGTTCGT
>XM_036944908.1
AAACGTCATATATAAACGACGACCGTGAATGTTCGGTTATTTTGCTTCtcatctagctagctagatagctaaccaGCTTGTGAATTTTGGGAAAATGGCTGAATCGTTTGAAGAACGTCTCGTAAAAGCTGTCAAAGAGCATACACACTTGTATGATACCTCAATGCGTTTACATTTCGACAAAGAGGCTCTCGAACACAGTTGGCGCGAAATTGCTACATATTTAAACTCCGATCCAGATACTTGCAGGAAGAAATGGAGACTTGCAAGGGACCGTCATGTGAGAGCACTGAAAAAGTCTAAGGACATGCCAGAGGGTGTACCGAGGCCTGGAAGCCTGAGTTGGCTCACCATTTTTATAAAACATCGGCAAACCAACCCAAACTTTCCCGAGATCTCAGCAGACAGAGTTGCGAGTCCTAATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGGCAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCACTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGTCTGAGAGCAAGGATGGTTTTAGAGTTGTTTCGTAATGAAAACCCACCGGACCCCCAGACCATCCAACTTAATTTGGACAGAATCAAAACTTCTTCGGTACATGCTGTGCACAAGGATTCACAGAGTAGAAATGAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCTGGTCAAAACCCTGCTCGAAGACCCTTCTGAGAAGAAGCACTTCTTCCAGgTGGTGTTCCCAATACGTTATGGCCCTCGGTATGACACAGCACTGCAGATACTGATGTGGGAGTTTCTCTCCCGACTGGAGGAGCTGCTGCCTGTACCAGACCTCACAGAGACAGCATCTCGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAATGAATTCTCCAACCAGGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGCCTTGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGGAGGATGATGGAAGTGAGAGAAATGAAGACACTGAGAGGGGATTGAAGGATGAGGATGACGCAAAGTGGACCTCGCCTCTGAGTGAACCAGAGGACTCGGATGAACCGGCTAGTGACATGCCCTCCCAGGTCTTCTCCTGCCCCCAGTGCCCATTCTCCCACAGGGAAATGGTGGACCTTCATCAGCACATCAGGAAGGAACATCTAAcagaggaggacagcaggagCCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAGCCAAGAGCTCCTCAGCCAAGAGCTCGTCAGCCAAGAGAATCAATAACAACACCTGCAAACAGTGTGGGAAGGGTTTCAGATGCACAACTGACCTGAAACGACACCAAAGTGTTCACACCAGTGTGCAGCCGTTCCGGTGCAATCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAATTGCACAAGAAAAGTCACGACGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGCAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGTACCCACACCGGAGAGCGCCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTCAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGATAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCACGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAACGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCCCCATTACTGCCACACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAACTCATAAAAAATAATGTCATTGGCTCTTTGTCAGACTAAAGGAATTTTTAACTAGTGTAATGTTTATTTCTCCTTGAGCTCAAAGCCAAAAGTAGGGAAAAAATAATTGTATTATAGGTAATGTACATCGTCCTGACAAAGTATCCATTCTGTTATTTTCCCCTTGGTAATGTGATCTGTTGTTAAAGAACTTTGGGCACAGACTTCACAATGACACGGAGGTTTTACTTAGTGCACTGCCAACTGCACTGTACTCTGTGAGCACAGTAGGGTTAACATGGTGTAAGGATCACATGTAGTTCGTGTAGGCTGTTCTGTACCTGAAGTAATGAAAAGTTTTGACTGCAACTATCAAGTTGTCTTTTTAATAATCATTCATGTGTTTTGGGGCAAGCTCCTGATGTATGTTGGAACAGAGTCCTCCCTTTTCtcctacatttttattttcagtcAGGCACCTGATTCCCTTCTGGTTCGT
>XM_036944909.1
AAACGTCATATATAAACGACGACCGTGAATGTTCGGTTATTTTGCTTCtcatctagctagctagatagctaaccaGCTTGTGAATTTTGGGAAAATGGCTGAATCGTTTGAAGAACGTCTCGTAAAAGCTGTCAAAGAGCATACACACTTGTATGATACCTCAATGCGTTTACATTTCGACAAAGAGGCTCTCGAACACAGTTGGCGCGAAATTGCTACATATTTAAACTCCGATCCAGATACTTGCAGGAAGAAATGGAGACTTGCAAGGGACCGTCATGTGAGAGCACTGAAAAAGTCTAAGGACATGCCAGAGGGTGTACCGAGGCCTGGAAGCCTGAGTTGGCTCACCATTTTTATAAAACATCGGCAAACCAACCCAAACTTTCCCGAGATCTCAGCAGACAGAGTTGCGAGTCCTAATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGGCAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCACTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGTCTGAGAGCAAGGTCACAGAGTAGAAATGAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCTGGTCAAAACCCTGCTCGAAGACCCTTCTGAGAAGAAGCACTTCTTCCAGgTGGTGTTCCCAATACGTTATGGCCCTCGGTATGACACAGCACTGCAGATACTGATGTGGGAGTTTCTCTCCCGACTGGAGGAGCTGCTGCCTGTACCAGACCTCACAGAGACAGCATCTCGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAATGAATTCTCCAACCAGGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGCCTTGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGGAGGATGATGGAAGTGAGAGAAATGAAGACACTGAGAGGGGATTGAAGGATGAGGATGACGCAAAGTGGACCTCGCCTCTGAGTGAACCAGAGGACTCGGATGAACCGGCTAGTGACATGCCCTCCCAGGTCTTCTCCTGCCCCCAGTGCCCATTCTCCCACAGGGAAATGGTGGACCTTCATCAGCACATCAGGAAGGAACATCTAAcagaggaggacagcaggagCCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAGCCAAGAGCTCCTCAGCCAAGAGCTCGTCAGCCAAGAGCTCGTCAGCCAAGAGCTCGTCAGCCAAGAGAATCAATAACAACACCTGCAAACAGTGTGGGAAGGGTTTCAGATGCACAACTGACCTGAAACGACACCAAAGTGTTCACACCAGTGTGCAGCCGTTCCGGTGCAATCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAATTGCACAAGAAAAGTCACGACGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGCAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGTACCCACACCGGAGAGCGCCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTCAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGATAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCACGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAACGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCCCCATTACTGCCACACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAACTCATAAAAAATAATGTCATTGGCTCTTTGTCAGACTAAAGGAATTTTTAACTAGTGTAATGTTTATTTCTCCTTGAGCTCAAAGCCAAAAGTAGGGAAAAAATAATTGTATTATAGGTAATGTACATCGTCCTGACAAAGTATCCATTCTGTTATTTTCCCCTTGGTAATGTGATCTGTTGTTAAAGAACTTTGGGCACAGACTTCACAATGACACGGAGGTTTTACTTAGTGCACTGCCAACTGCACTGTACTCTGTGAGCACAGTAGGGTTAACATGGTGTAAGGATCACATGTAGTTCGTGTAGGCTGTTCTGTACCTGAAGTAATGAAAAGTTTTGACTGCAACTATCAAGTTGTCTTTTTAATAATCATTCATGTGTTTTGGGGCAAGCTCCTGATGTATGTTGGAACAGAGTCCTCCCTTTTCtcctacatttttattttcagtcAGGCACCTGATTCCCTTCTGGTTCGT

Function

NR:

description
zinc finger protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563946.2 False 2757 mRNA 0.47 9 61836836 61842089
XM_036944908.1 False 2727 mRNA 0.47 10 61836836 61842089
XM_036944909.1 True 2652 mRNA 0.47 8 61836836 61842089

Neighbor

gene id symbol gene type direction distance location
LOC110490520 zn12 coding downstream 14178 61804053 ~ 61822658 (-)
LOC110490525 LOC106576390 coding downstream 38339 61791810 ~ 61798497 (-)
LOC110490519 LOC106576394 coding downstream 77259 61744166 ~ 61759577 (-)
LOC110490527 LOC106609530 coding downstream 104889 61726204 ~ 61731947 (-)
LOC110490534 LOC106609529 coding downstream 113710 61719265 ~ 61723126 (-)
LOC110490536 NA coding upstream 8278 61850367 ~ 61861261 (-)
LOC110490558 NA coding upstream 216521 62058610 ~ 62062523 (-)
LOC110490561 LOC106576375 coding upstream 238882 62080971 ~ 62083812 (-)
LOC118938820 NA coding upstream 284449 62126538 ~ 62130465 (-)
LOC118938821 NA coding upstream 287387 62129476 ~ 62129665 (-)
G1315509 NA non-coding downstream 263 61834626 ~ 61836573 (-)
G1315499 NA non-coding downstream 13472 61823142 ~ 61823364 (-)
G1315485 NA non-coding downstream 48279 61788355 ~ 61788557 (-)
G1315464 NA non-coding downstream 76560 61760075 ~ 61760276 (-)
G1315443 NA non-coding downstream 95777 61740528 ~ 61741059 (-)
G1315522 NA non-coding upstream 25299 61867388 ~ 61868018 (-)
G1315518 NA non-coding upstream 32906 61874995 ~ 62006707 (-)
G1315537 NA non-coding upstream 61362 61903451 ~ 61912714 (-)
G1315538 NA non-coding upstream 62060 61904149 ~ 61923641 (-)
G1315578 NA non-coding upstream 189044 62031133 ~ 62031489 (-)
G1315398 LOC106609523 other downstream 224720 61610420 ~ 61612116 (-)
G1314304 NA other downstream 1064348 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2412529 59420247 ~ 59424344 (-)
G1312023 NA other downstream 3145454 58634282 ~ 58691382 (-)
G1315519 NA other upstream 22941 61865030 ~ 61891421 (-)
G1316051 LOC106609550 other upstream 200681 62042770 ~ 62056023 (-)
G1316178 NA other upstream 415009 62257098 ~ 62264093 (-)
G1316323 NA other upstream 692199 62534288 ~ 62537470 (-)

Expression


Co-expression Network