LOC110490536


Basic Information

Item Value
gene id LOC110490536
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61850367 ~ 61861261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468714.2
ACAACACGggagacttttattttgaagactcATGATTTGTGGTCACAACAAAcattactgacacctacccatgagcccaCTCTTTTTCATTTACTATAACAAGCATCCTCAACCACTGAGCACCGACCAACACTGGATGTCCATGGACGTTGAAAACGTTTCAAGCCTCCAAGCTGGCTACCTAACGTTAACATACCGTCGTAGCAGCATTAGCAGCTTGTTTTGCTGGCGATATGGATTCAAAAGttcttaacaagaaagaaacaagaAAGTGGAGGCATCAAAGTCTAACTTTGTGGAGCTGGTCCAAACCCTGCTGGAAGACCCAGTGAAGAGGGAGCACTTTTTTCAGGAGGTGTTCCCAGTGCTGCAGATTCTGGTGTGACACAGCACTGCAGATTCTAGTGTGGGAGTTTTTCTCCAGATTGGAGCAGCTGCTGCTGGTACCCAGCTTTACACAGACAACATCTTGTCTCAGCCTTGCCTTCTCTGACCTGGAGGAGTGTGTTCagtctgtctctgaccctgagCACCTGAAGACACTGCTACAGCATCAAAGACACCTGGGACACCTAAACAGAGATCATTTGTTCTACGACTCTGACACCATCCTGTCCGCTCTGACCCTCACTTCCTTGGTAAACTGGAAACAAACTTCAGTGGAGGCTTGAGGTCGTGACACTAGTTCTGGACAGCAGAAACCAGGATCATCACTACACGCGCGCCCAATGGCCGTTGACGGCAGAACCGGATAGTGACATGCCCTCCCAGGTCTTCTCCTGCACCCTGTGCCCATTCTCCCACAGGAGAGAGGTGAACCTTCAGCAGCACATCAGAAAGGAACATCTAGcagaggaggacagcaggagCCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAATACAGAGACCCTCAATCAAGACAACCAAGAAGTACATCTGCTTTAAATGTGGAAAGGGTTTCAGAAGCCCATCGGACCTGAAACGACATAAGGGTGTTCACACAGACATGCAGCCGTTCCATTGCAACCAGTGTGATAAAAGATTCAAAGCGAAGGGTAGTCTAAAACAGCACCAACGGGTTCACTCAGGAGAAAGGCCTTATGATTGCTCACATTGTGGCAGGGGGTTTAGGACATCAGATATCTTAGTCTCATTTACGCATTCATACTGGGGAGCGATCTTATGGGTGTACAatatgtgggaagagatttgttCAACGGCAAGTACTAACAAGACTCATTAGGATGCACAGTGGAGAGAAACCATACTTATAGCATTTGTGGAAAGACCTTCGCATGCTCAGGGGAGCTGATGTTACACTCAAGGATCCACACAGGGGAACGACCGTATCATTGTGAACAATGTGGGAATACTTTGTCTAGCAAGTAAACTGAAAGTTCATCAACAAAGTCATACAGGCGAACACCCATACCCCTGTACACAGTGCCCCAAACGCTTCTCCACCTCCACCAGACTAGTGAAACACATGCGAATTCATACTGGGGAGAAACCTTACCCATGTGTAAAGTGTGGCAAAAGATATTCTGGAAGGGGAAACATGAGAATACATCAATGAATGcat
>XR_005036157.1
TACAACACGggagacttttattttgaagactcATGATTTGTGGTCACAACAAAcattactgacacctacccatgagcccaCTCTTTTTCATTTACTATAACAAGCATCCTCAACCACTGAGCACCGACCAACACTGGATGTCCATGGACGTTGAAAACGTTTCAAGCCTCCAAGCTGGCTACCTAACGTTAACATACCGTCGTAGCAGCATTAGCAGCTTGTTTTGCTGGCGATATGGATTCAAAAGCATCCATGTGGCACGTGGCTGAGCAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGTTAAGCTCCAGGCAGAGGACCCAACTCATTCTAGGACTGAGAGCAAGGttcttaacaagaaagaaacaagaAAGTGGAGGCATCAAAGTCTAACTTTGTGGAGCTGGTCCAAACCCTGCTGGAAGACCCAGTGAAGAGGGAGCACTTTTTTCAGGAGGTGTTCCCAGTGCTGCAGATTCTGGTGTGACACAGCACTGCAGATTCTAGTGTGGGAGTTTTTCTCCAGATTGGAGCAGCTGCTGCTGGTACCCAGCTTTACACAGACAACATCTTGTCTCAGCCTTGCCTTCTCTGACCTGGAGGAGTGTGTTCagtctgtctctgaccctgagCACCTGAAGACACTGCTACAGCATCAAAGACACCTGGGACACCTAAACAGAGATCATTTGTTCTACGACTCTGACACCATCCTGTCCGCTCTGACCCTCACTTCCTTGGTAAACTGGAAACAAACTTCAGTGGAGGCTTGAGGTCGTGACACTAGTTCTGGACAGCAGAAACCAGGATCATCACTACACGCGCGCCCAATGGCCGTTGACGGCAGAACCGGATAGTGACATGCCCTCCCAGGTCTTCTCCTGCACCCTGTGCCCATTCTCCCACAGGAGAGAGGTGAACCTTCAGCAGCACATCAGAAAGGAACATCTAGcagaggaggacagcaggagCCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAATACAGAGACCCTCAATCAAGACAACCAAGAAGTACATCTGCTTTAAATGTGGAAAGGGTTTCAGAAGCCCATCGGACCTGAAACGACATAAGGGTGTTCACACAGACATGCAGCCGTTCCATTGCAACCAGTGTGATAAAAGATTCAAAGCGAAGGGTAGTCTAAAACAGCACCAACGGGTTCACTCAGGAGAAAGGCCTTATGATTGCTCACATTGTGGCAGGGGGTTTAGGACATCAGATATCTTAGTCTCATTTACGCATTCATACTGGGGAGCGATCTTATGGGTGTACAatatgtgggaagagatttgttCAACGGCAAGTACTAACAAGACTCATTAGGATGCACAGTGGAGAGAAACCATACTTATAGCATTTGTGGAAAGACCTTCGCATGCTCAGGGGAGCTGATGTTACACTCAAGGATCCACACAGGGGAACGACCGTATCATTGTGAACAATGTGGGAATACTTTGTCTAGCAAGTAAACTGAAAGTTCATCAACAAAGTCATACAGGCGAACACCCATACCCCTGTACACAGTGCCCCAAACGCTTCTCCACCTCCACCAGACTAGTGAAACACATGCGAATTCATACTGGGGAGAAACCTTACCCATGTGTAAAGTGTGGCAAAAGATATTCTGGAAGGGGAAACATGAGAATACATCAATGAATGcat

Function

NR:

description
zinc finger protein 239-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468714.2 False 1599 mRNA 0.47 6 61850367 61861260
XR_005036157.1 True 1743 mRNA 0.48 7 61850367 61861261

Neighbor

gene id symbol gene type direction distance location
LOC110490521 LOC106576387 coding downstream 8278 61836836 ~ 61842089 (-)
LOC110490520 zn12 coding downstream 27709 61804053 ~ 61822658 (-)
LOC110490525 LOC106576390 coding downstream 51870 61791810 ~ 61798497 (-)
LOC110490519 LOC106576394 coding downstream 90790 61744166 ~ 61759577 (-)
LOC110490527 LOC106609530 coding downstream 118420 61726204 ~ 61731947 (-)
LOC110490558 NA coding upstream 197349 62058610 ~ 62062523 (-)
LOC110490561 LOC106576375 coding upstream 219710 62080971 ~ 62083812 (-)
LOC118938820 NA coding upstream 265277 62126538 ~ 62130465 (-)
LOC118938821 NA coding upstream 268215 62129476 ~ 62129665 (-)
LOC110490564 LOC106609562 coding upstream 304459 62165720 ~ 62169335 (-)
G1315509 NA non-coding downstream 13794 61834626 ~ 61836573 (-)
G1315499 NA non-coding downstream 27003 61823142 ~ 61823364 (-)
G1315485 NA non-coding downstream 61810 61788355 ~ 61788557 (-)
G1315464 NA non-coding downstream 90091 61760075 ~ 61760276 (-)
G1315443 NA non-coding downstream 109308 61740528 ~ 61741059 (-)
G1315522 NA non-coding upstream 6127 61867388 ~ 61868018 (-)
G1315518 NA non-coding upstream 13734 61874995 ~ 62006707 (-)
G1315537 NA non-coding upstream 42190 61903451 ~ 61912714 (-)
G1315538 NA non-coding upstream 42888 61904149 ~ 61923641 (-)
G1315578 NA non-coding upstream 169872 62031133 ~ 62031489 (-)
G1315398 LOC106609523 other downstream 238251 61610420 ~ 61612116 (-)
G1314304 NA other downstream 1077879 60772145 ~ 60772488 (-)
G1312865 rps16 other downstream 2426060 59420247 ~ 59424344 (-)
G1312023 NA other downstream 3158985 58634282 ~ 58691382 (-)
G1315519 NA other upstream 3769 61865030 ~ 61891421 (-)
G1316051 LOC106609550 other upstream 181509 62042770 ~ 62056023 (-)
G1316178 NA other upstream 395837 62257098 ~ 62264093 (-)
G1316323 NA other upstream 673027 62534288 ~ 62537470 (-)

Expression


Co-expression Network