LOC110490558


Basic Information

Item Value
gene id LOC110490558
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62058610 ~ 62062523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468721.2
GGACACCTGCCTGCTATTTCCTGGGATTCTCACCAAAGGGAGAACACAACTTGTTTGAACTCGACAGGCCAGAGACTGAGTGAAGGGGAAGATGACTGAACACACAGCACCGTCTGTTTCTGTTGTACAGTAAACTCTGATATGTTGTCATGTGTACAAGTTGACTGCAGTAAAGGGAGAGGGCCAGTCCTGGACTTTGAAAAGAGGGCATAGCGCAGTTAAGACAAAACCACGTCCGTTATTCAGAGAGGCGTTCTACTACGCTCCCAGCGCAGAGACAGTGACCTTCCAAGAACCTTATAAAGAGGTCTTCCACCGACCGCCAAAACATCTATTCTAAGAACAATGGAAACCTGACGTATCCATTACAACCGACGTTATCAGGAGCCGCAGATAGAGCTAGAGCTACAACCATGAAAGACATTGTGACTTCTGGGGAAGTAACCAGAGATtctctgatgaactgactctccagcagacggaccgacaattccaacagagaagacaacaacgatgtcacgactcctaccgaaggtggcttcCCTTCGTGTTCGGGTGGcgcggcggtcgtcgtcaccggcctactagctgcctcTAACCTTTTCCCcccttgtctgtttattagttacacctgtGTTTAGTTAGATTGATTGGTTGGACTTTATTATCCAGCCGGCCCACCTGCTGGGTGTGCAGGATTGTTTGCAGTGTACTGTTGTGCACGACTGTATGTCACGGTTGTCCGTGTATGTGTTTTGCTCTACTGTTTAGTTCCCCGTGTTTTGGCGCATTTGTTTGGGTTGGCGTCGTTTTCACCGGTGTGGTGTAAAGTATGGCTACCCTGAACTTTctgtttcctgcgcctgactctttcctccactacaccccgggcatTACAAACGACATATGGGCGTAAATAtgttgattgcaattattcccgaatgagtgaaagttcatgtgcaaaggattagcatttcaatgaatATAATTATCCACTGTGTGTAGTGATCAATTTAGCCTTTGCCGCTCCTTTATCAGTCCACACCCCCTTTTCTTTGTATACCAAGCAGTCATATCGGTTTAGTCCACTTGGTGATCTTCCctatcattgttagtaaccaatatctactgtttgtttggtATGCATTTCtttgattatttagttagttagtaaatacatgattaagccaattggtgtatggatgattcatagtttAGGCTGGGTTTGGTCAGATAATTAAGAATTTACGACATTTggaaagaataattcattaatagaagactaattTAGTTATATttggaaaattataactttgtaatctgaagattttccgtgatgccccaacttcctagttaattcaattgacatgattagtttaatcacgtaataattagagaattgatttgataaaataacagtctgcACATTTAATGATAGCCAGAGACACGACACCAGTAGGCCAAGTAAATGTACCGTTAATCCTGTGTCATTTACattcatttctgttaatgcatgtatTAACCATAGTCAATTACCGTTCTCATTATGTTGTTTACGGTGTTGAGTTCACAACTATTGAATTTTTTGGGGTTAATTTCATAACAATTACAAGTTTTGTAAAATATTTGTTCATTGCCTTTTGTTTGGAGTGCAATGAGCATGTTCTCTGTCCTGATACAGTCGAGGGAGCGTGCGCCTGAGCACGCACAGAAGTCAACAGTTTACAGTGGCTTCCTCTCTCCTCGTTTTCTAGCCCTCATCTGCTCTTAGAAAAGATAACAGGATTGTATTGTAGGGGtgccatgtggctcagttggcagagcatggtgcttgcaacacaagggttgtgggtttgatacCCATGTGGGACCAGTACAAAAAAAGTAAGAAGAATGCCATAAAATGGACCAAACattttaatgtaaaaaaataatgtattcaCTAAGTGTATTCATTCAATTTGTCCAATGAGAAACACTGTTTTACAGTTTTTATAACTGTTACTGGTACCCACAGATATC
>TU1501518
CCTGCCTGCTATTTCCTGGGATTCTCACCAAAGGGAGAACACAACTTGTTTGAACTCGACAGGCCAGAGACTGAGTGAAGGGGAAGATGACTGAACACACAGCACCGTCTGTTTCTGTTGTACAGTAAACTCTGATATGTTGTCATGTGTACAAGTTGACTGCAGTAAAGGGAGAGGGCCAGTCCTGGACTTTGAAAAGAGGGCATAGTTAAGACAAAACCACGTCCGTTATTCAGAGAGGCGTTCTACTACGCTCCCAGCGCAGAGACAGTGACCTTCCAAGAACCTTATAAAGAGGTCTTCCACCGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468721.2 False 2022 mRNA 0.42 3 62058610 62062523
TU1501518 True 311 lncRNA 0.48 3 62060311 62062518

Neighbor

gene id symbol gene type direction distance location
LOC110490536 NA coding downstream 197349 61850367 ~ 61861261 (-)
LOC110490521 LOC106576387 coding downstream 216521 61836836 ~ 61842089 (-)
LOC110490520 zn12 coding downstream 235952 61804053 ~ 61822658 (-)
LOC110490525 LOC106576390 coding downstream 260113 61791810 ~ 61798497 (-)
LOC110490519 LOC106576394 coding downstream 299033 61744166 ~ 61759577 (-)
LOC110490561 LOC106576375 coding upstream 18448 62080971 ~ 62083812 (-)
LOC118938820 NA coding upstream 64015 62126538 ~ 62130465 (-)
LOC118938821 NA coding upstream 66953 62129476 ~ 62129665 (-)
LOC110490564 LOC106609562 coding upstream 103197 62165720 ~ 62169335 (-)
LOC110490568 LOC106609566 coding upstream 573115 62633205 ~ 62712367 (-)
G1316052 LOC106609550 non-coding downstream 16060 62040640 ~ 62042550 (-)
G1315582 NA non-coding downstream 23133 62035061 ~ 62035477 (-)
G1315579 NA non-coding downstream 26453 62031945 ~ 62032157 (-)
G1315578 NA non-coding downstream 27121 62031133 ~ 62031489 (-)
G1315518 NA non-coding downstream 51903 61874995 ~ 62006707 (-)
G1316122 NA non-coding upstream 68098 62130621 ~ 62132344 (-)
G1316145 NA non-coding upstream 128641 62191164 ~ 62191587 (-)
G1316142 NA non-coding upstream 159291 62221814 ~ 62224615 (-)
G1316174 NA non-coding upstream 187670 62250193 ~ 62250404 (-)
G1316178 NA non-coding upstream 194575 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 2587 62042770 ~ 62056023 (-)
G1315519 NA other downstream 167189 61865030 ~ 61891421 (-)
G1315509 NA other downstream 222404 61834626 ~ 61836573 (-)
G1315398 LOC106609523 other downstream 446494 61610420 ~ 61612116 (-)
G1316323 NA other upstream 471765 62534288 ~ 62537470 (-)
LOC110490571 LOC106596632 other upstream 693159 62754956 ~ 62767499 (-)
G1316451 NA other upstream 840336 62902859 ~ 62904682 (-)
G1316904 LOC106609576 other upstream 1223984 63256527 ~ 63287904 (-)
G1315538 NA non-coding downstream 136670 61904149 ~ 61923641 (-)

Expression


Co-expression Network